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Messenger Ribonucleic Acid Isoforms Generated by Alternative Splicing and Promoter Usage1
EMBL (C.G., G.F.V.S.-B., F.G.), D-69117 Heidelberg, Germany; and National Diagnostic Center, National University of Ireland (C.G., P.N.), Galway, Ireland
Address all correspondence and requests for reprints to: Dr. Frank Gannon, EMBL, Postfach 10.2209, Meyerhofstrasse 1, D-69012, Heidelberg, Germany. E-mail: gannon{at}embl-heidelberg.de
Using the rapid amplification of complementary DNA ends (RACE)
methodology we have identified three new chicken estrogen receptor-
(cER
) messenger RNA (mRNA) variants in addition to the previously
described form (isoform A). Whereas one of the new variants (isoform B)
presents a 5'-extremity contiguous to the 5'-end of isoform A, the two
other forms (isoforms C and D) are generated by alternative splicing of
upstream exons (C and D) to a common site situated 70 nucleotides
upstream of the translation start site in the previously assigned exon
1 (A). The 3'-end of exon 1C has been located at position -1334
upstream of the transcription start site of the A isoform (+1). Whereas
the genomic location of exon 1D is unknown, 700 bp 5' to this exon were
isolated by genomic walking, and their sequence was determined. The
transcription start sites of the cER
mRNA isoforms were defined. In
transfection experiments, the regions immediately upstream of the AD
cER
mRNA isoforms were shown to possess cell-specific promoter
activities. Three of these promoters were down-regulated in the
presence of estradiol and ER
protein. It is concluded,
therefore, that the expression of the four different cER
mRNA
isoforms is under the control of four different promoters. Finally,
RT-PCR, S1 nuclease mapping, and primer extension analysis of
these different cER
mRNA isoforms revealed a differential pattern of
expression of the cER
gene in chicken tissues. Together, the results
suggest that alternative 5'-splicing and promoter usage may be
mechanisms used to modulate the levels of expression of the chicken
ER
gene in a tissue-specific and/or developmental stage-specific
manner.
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