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Endocrinology Vol. 138, No. 11 4757-4767
Copyright © 1997 by The Endocrine Society


ARTICLES

Molecular Cloning of Ovine and Bovine Type I Interferon Receptor Subunits from Uteri, and Endometrial Expression of Messenger Ribonucleic Acid for Ovine Receptors During the Estrous Cycle and Pregnancy1

Chun-Sheng Han, Nagappan Mathialagan, Stephen W. Klemann and R. Michael Roberts

Departments of Biochemistry (C.S.H., R.M.R), Animal Sciences (N.M., R.M.R), and Veterinary Pathobiology (R.M.R), University of Missouri, Columbia, Missouri 65211; and Department of Biology (S.W.K.), Rollins College, Winter Park, Florida 32789

Address all correspondence and requests for reprints to: R. Michael Roberts, 158 Animal Sciences Reseach Center, University of Missouri, Columbia, Missouri 65211. E-mail: michael_roberts{at}muccmail.missouri edu.


    Abstract
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
Interferon-{tau} (IFN-{tau}), a type I IFN structurally related to IFN-{alpha}, is regarded as the major antiluteolytic factor secreted by the conceptus of ruminant ungulate species before definitive trophoblast attachment and implantation. It mediates its effects by acting on the uterine endometrium, where it blunts the normal pulsatile production of PGF2{alpha}, presumably as a result of its binding to type I IFN receptors. In this study, we describe the complementary DNAs for the two known subunits, IFNAR1 and IFNAR2, of this receptor isolated from bovine and ovine endometrial complementary DNA libraries by homology cloning. Although there is extensive inferred amino acid sequence similarity between bovine and ovine IFNAR1 (92% identity) and between bovine and ovine IFNAR2 (88% identity), they have diverged extensively from the human receptor subunits (~67% and ~58% identity, respectively). Despite these differences in primary structure, the respective subunits from all three species are organized similarly in their extracellular and cytoplasmic regions, and the bovine and ovine subunits have each retained a number of polypeptide motifs implicated in signal transduction. These uterine receptors also appear not to be splice variants. The cloned ovine IFNAR1 subunit, for example, possesses the expected four extracellular SD100 domains of full-length bovine and huIFNAR1, and only the homologs of the so-called long form (huIFNAR2c) of human IFNAR2 have so far been identified. RT-PCR procedures indicate that the messenger RNA for both subunits are found, not only in endometrium, but in all other tissues examined except those of preimplantation conceptuses, which presumably cannot respond to the IFN-{tau} they produce. Quantitative RNase protection assays of ovine endometrial RNA show that the expression of neither subunit changes greatly during the estrous cycle or pregnancy. These data suggest that the type I IFN receptor, which is expressed by the endometrium and binds IFN-{tau}, is probably not a structurally unusual form.


    Introduction
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
THE TYPE I interferons (IFN) are a complex group of cytokines, comprised of at least four subtypes, IFN-{alpha}, -ß, -{omega}, and -{tau} (1, 2). The first three of these are virally inducible, although they demonstrate cell type specificity and may also be expressed in response to stimuli not originating from viral infection (1, 3). All four subtypes share many properties in common. For example, they have antiviral, antiproliferative, and immunomodulatory properties (1, 3) and compete with one another for binding to the same type I IFN receptor (4, 5). Although in the human there are only single functional IFN-ß and -{omega} genes, there are at least 21 IFN-{alpha} genes, of which 13 are believed to be active (6). In cattle, the situation is even more complex, as each of the subtypes is represented by multiple genes (2, 7, 8, 9). It remains unexplained why so many type I genes have arisen, although they differ in their inducibility and hence may provide a flexible response to infection by different pathogens (10). It is also becoming clear that the properties of individual type I IFN, although generally similar, are not identical. Comparable antiviral potency, for example, does not necessarily predict equivalent antiproliferative activities (11, 12, 13). Different human IFN-{alpha} can also differ by as much as three orders of magnitude in their antiviral potency (14). Moreover cells that are responsive to one IFN, may respond poorly to another, even of the same subtype (1, 15, 16). Together, such data suggest that there may be multiple type I receptor complexes linked to different signal transducing components. The recent observation that receptors containing splice variants of one of the subunits (IFNAR1) of the human type I receptor are differentially responsive to different IFN subtypes (17) is consistent with such a hypothesis. Alternatively, similar receptor complexes may be capable of initiating alternative signal transducing pathways, depending on which IFN binds.

About 10 yr ago, a fourth type I IFN subtype, the IFN-{tau}, was described (18, 19). Unlike the other three type I IFNs, IFN-{tau} is not virally inducible (20, 21); nor is it believed to be important as a response to infection (19). Instead, it is expressed in what may be a constitutive manner during normal preimplantation development of embryos of ruminant ungulate species, where it plays a pivotal role in maternal recognition of pregnancy (19, 22). Specifically, IFN-{tau} acts on the uterine endometrium and blocks the normal pulsatile output of the uterine luteolysin, PGF2{alpha}. When released in such a pulsatile manner toward the end of the estrous cycle, PGF2{alpha} causes the demise of the corpus luteum (23). The mechanism of IFN-{tau} action is incompletely understood but may involve a down-regulation of the estrogen receptor and a subsequent failure of the uterine epithelial cells to express the oxytocin receptor (24, 25, 26). Oxytocin, originating from either the pituitary or the corpus luteum, regulates PGF2{alpha} release (23). As a result, during pregnancy, the lifespan of the corpus luteum is extended and progesterone production maintained.

Although IFN-{tau} has comparable antiviral activity to boIFN-{alpha}1 on bovine (Mabin Darby bovine kidney) cells, and the two have almost identical affinities for the endometrial type I IFN receptor (27), IFN-{tau} is considerably more potent as an antiluteolysin, again raising questions about the nature of the type I receptor expressed by the uterus.

Molecular cloning and expression studies have so far indicated that a functional type I receptor consists of a minimum of two subunits, both of which are in the so-called class II cytokine receptor family (28, 5). The first to be identified, IFNAR1, has been cloned as its complementary DNA (cDNA) from human (29), mouse (30), and bovine (31, 32) cells. Its extracellular part consists of two distinct approximately 200 amino acid domains (D200), each of which is divided further into two shorter subdomains (SD100) with structural similarity to the constant region of immunoglobulins (28). Its cytoplasmic domain contains binding sites for the tyrosine kinase, Tyk2, and the transcription factor signal-transducer and activator of transcription (STAT) 2 (33, 34, 35) and 3 (36). Three splice variants have been described. One of these lacks the second SD100 domain (17), whereas the other two are soluble forms without the single transmembrane domain (37). IFNAR1, alone, generally appears not to bind type I IFN efficiently (29), and a second subunit (IFNAR2) is necessary to allow IFN to bind with high affinity to the receptor (30, 38). Three variant forms of IFNAR2 have been recognized. One is soluble (IFNAR2a) and was first purified from human urine (38). The two membrane-associated forms from human tissues (IFNAR2b and IFNAR2c) have identical extracellular regions, but, as the result of alternative splicing have different length cytoplasmic domains (38, 39). IFNAR2b, the so-called short form, lacks the signal-transducing capacity of the long form IFNAR2c, whose cytoplasmic domain may provide docking sites for JAK1 and STAT2 (39). A functional type I receptor, capable of binding IFN-{alpha} and -ß and participating in signal transduction, seems only to be reconstituted by coexpressing human IFNAR1 (huIFNAR1) and IFNAR2c (39).

In this study we set out to determine whether the full-length forms of IFNAR1 and IFNAR2 were expressed together in the endometrial tissues of sheep and cattle, and whether they differed significantly from their human counterparts. In addition, we wished to determine whether the expression of these two receptor subunits changed either as the estrous cycle progressed or as pregnancy was established, and whether the conceptus, as the source of the IFN-{tau}, possessed type I IFN receptors. Preliminary reports of these findings were published in an abstract form (40).


    Materials and Methods
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
Tissues and RNA extraction
Cross-bred ewes 2–5 yr of age were detected to be in estrus with teaser rams after injection of PGF2{alpha} (two 5-mg injections given 3 h apart). Ewes were either then bred to intact rams or allowed to progress to selected days of their estrous cycle. Recovery of embryos from pregnant ewes and the procedure for hysterectomy have been described previously (41). All animals were maintained with the highest standards of humane animal care. Study protocols were approved by the University of Missouri Animal Care and Use Committee.

Total RNA and poly(A)+ messenger RNA (mRNA) extraction from sheep tissues followed standard procedures (42). Total RNA and mRNA isolated from pooled tissues of five to six animals were used in RT-PCR, as well as for preparation of the cDNA libraries, whereas total RNA from single ewes was used in RNase protection assays.

Oligonucleotides, enzymes, and other reagents
The oligonucleotides synthesized for use in RT-PCR, rapid amplification of cDNA ends (RACE), subcloning, and labeling of cDNA probes are shown in Table 1Go. Products produced by these PCR procedures were sequenced to confirm identity and hence specificity. All restriction enzymes, T4 DNA ligase and avian myeloblastosis virus reverse transcriptase were purchased from Promega (Madison, WI); Taq DNA polymerase and terminal deoxynucleotide transferase were obtained from GIBCO BRL (Gaithersburg, MD); Sequenase and [{alpha}-35S]deoxy-ATP (dATP) were from Amersham (Arlington Heights, IL); [{alpha}-32P]dATP was from DuPont NEN (Boston, MA); other chemical reagents were mainly purchased from Fisher Scientific Company (Pittsburgh, PA). Bovine IFNAR1 (boIFNAR1) cDNA plasmid (pMD56) was kindly provided by Dr. G. Uzé from Institute de Génétique Moléculaire, CNRS, Montpellier, France.


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Table 1. Oligonucleotides used as primers for either RT or PCR reactions

 
Cloning of IFNAR1 and IFNAR2 cDNA
The ovine and bovine endometrial cDNA libraries were made from d12 nonpregnant ewe and d17 pregnant cow endometrial poly(A)+ RNA in {lambda}ZAP II vector (Stratagene, La Jolla, CA), respectively. The libraries were amplified in XL-1 blue cells and used for screening by standard procedures (43). For cloning ovine IFNAR1 (ovIFNAR1), about 3.2 x105 plaque-forming units of the d12 sheep endometrial cDNA library was screened with a 1.2 kb HincII cut fragment of boIFNAR1 as probe. This probe spans 1208 bp from 357–1565 of the IFNAR1 cDNA and represents most of the coding region (31). Six positive clones were plaque purified. The plasmids were excised from the phage by in vivo excision and sequenced in both directions. The insert sizes of the six clones were in the range of 0.65–2.2 kb. The merged sequences of these clones gave the full-length sequence of ovIFNAR1 (2914 bp), though none of them contained the entire coding region, which was subsequently cloned from the same source by RT-PCR.

For cloning ovIFNAR2, the same cDNA library was screened with a huIFNAR2 cDNA probe. This huIFNAR2 cDNA probe, representing part of the extracellular domain (amino acids 74–204) of the protein, was amplified by RT-PCR from Daudi cells (38). Only a single positive clone (length 1890 bp) was isolated out of 7.5 x 105 plaques screened. This clone lacked the entire 5' untranslated region (UTR) as well as the 5' end of the open reading frame (ORF) of the cDNA. A RACE procedure was therefore employed (Fig. 1Go) to clone the 5' end of the transcript. The RACE procedure involved RT coupled with two rounds of PCR. The RT step converted the mRNA to a single-strand cDNA. Terminal deoxynucleotide transferase was then used to add a poly(A)+ tail to the 3' end (42). In the first round of PCR, ovIFNAR2-specific antisense primer 2A and primer T17 (Table 1Go) were used. The PCR products obtained appeared as a smear in an ethidium bromide-stained agarose gel. In the second round of amplification, ovIFNAR2-specific antisense primer 7A (Fig. 1Go and Table 1Go) was used in combination with T17. First-round PCR product (1 µl) was used as template. This time, a single PCR product band was seen in the agarose gel and was subsequently cloned and sequenced.



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Figure 1. Cloning strategy for obtaining cDNA for ovIFNAR2. Horizontal bars and lines represent protein coding regions and UTR of each cDNA clone, respectively. Shaded bars show that aligned regions are either homologous or identical. Vertical open bar (TM) indicates transmembrane domain of the protein. Two oligonucleotides, HS and HA, based on huIFNAR2b cDNA sequence (38), were used in RT-PCR to clone a cDNA from Daudi cell RNA. This cDNA was in turn used to screen a day 12 sheep endometrial cDNA library and provided a partial cDNA for ovIFNAR2 (H1). Two ovIFNAR2-specific antisense oligonucleotides, 2A and 7A, were then synthesized and used in a RACE procedure to produce R35 cDNA clone, which represented 5' UTR and part of coding region of ovIFNAR2. Clones H1 and R35 were 100% identical on their overlapping regions and were ligated at a common Bgl 2 site to generate full-length ovIFNAR2 cDNA.

 
The boIFNAR2 was cloned by screening a bovine endometrial cDNA library (day 17 estrous cycle) with a 360-bp ovIFNAR2 probe representing part of the extracellular domain. Eight positive clones out of 4.2 x 105 plaques were purified. Three of them were sequenced and represented a single cDNA.

The cDNA probes used to screen the libraries were labeled by PCR in the presence of [{alpha}-32P]dATP (for PCR conditions, see below). As a result, high specific activity probes (sp. act. ~1.3 x 109 cpm/µg) were produced. The hybridization solution contained either 30 or 50% formamide, 0.5 mg/ml herring sperm DNA, 5 x SSC, 5 x Denhardt’s solution, 50 mM sodium phosphate, and 0.1% SDS. Because formamide (30% when using the human cDNA probe to screen ovine library; 50% when using bovine/ovine probes to screen ovine/bovine libraries) was included, the hybridization temperature was always kept at 42 C (42). After positive clones were identified by the first round of screening, they were further purified by another two rounds of screening. They were then subcloned by in vivo excision from the phagmid.

RT-PCR and Southern blot analysis of PCR products
Total RNA extracted from various tissues of ewes and from Daudi cells were used for RT-PCR. All RT reactions were performed as follows. Approximately 2 µg total RNA and 1 µg oligo(dT) primer, T17, in 20 µl sterile water was incubated at 70 C for 3 min and cooled to room temperature. Premixed reaction mixture (30 µl), containing 10 µl 5 x RT buffer, 5 µl deoxynucleotide triphosphate mixture (10 mM each in the mixture), 40 U recombinant RNasin, 2 µl 100 mM sodium pyrophosphate, and 30 U AMV reverse transcriptase, was added to the RNA-oligo(dT) mixture and incubated at 42 C for 1 h to synthesize the first strand cDNA. The reactions were terminated by heating at 70 C for 3 min. For subsequent PCR, 1 µl of the above RT product was used as template in a 20-µl reaction containing 60 ng sense and antisense primers, 20 µM of each deoxynucleotide triphosphate, 50 mM KCl, 2.5 mM MgCl, 10 mM Tris-HCl, pH 8.3, and 0.5 U Taq DNA polymerase. PCR was carried out under the following conditions: 94 C for 1 min, 55 C for 1 min, and 72 C for 1 min for 30 cycles in a Perkin-Elmer thermocycler (Perkin-Elmer Corp., Norwalk, CT).

The PCR products were resolved by electrophoresis in 1% (wt/vol) agarose gels in the presence of ethidium bromide (1 µg/ml) (43). After electrophoresis, agarose gels were photographed under UV illumination, and the PCR products blotted onto nitrocellulose filters that were hybridized with 32P-labeled probes in 50% formamide, 0.5 mg/ml herring sperm DNA, 5 x SSC, 5 x Denhardt’s solution, 50 mM sodium phosphate, and 0.1% SDS at 42 C. The filters were washed with 5 x SSC and 0.1% SDS at 42 C for 15 min and subjected to autoradiography. The probes used for confirming the identities of PCR procedures always nested inside the expected PCR fragments so that they would not hybridize to any nonspecific PCR products that contained the 5' and 3' primer sequences (Fig. 4AGo).



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Figure 4. Expression of ovIFNAR1 and ovIFNAR2 in ovine tissues as detected by RT-PCR. A, A schematic diagram of sizes and placements (relative to full-length cDNA) of expected RT-PCR products generated, and cDNA probes used. Primers (labeled P-558, etc.) for PCR are represented by small black rectangles. B, Ethidium bromide-stained agarose gel of RT-PCR products for ovIFNAR1 and ovIFNAR2 (A and C) and corresponding Southern blot autoradiographs (B and D). Expression of G3PD, the positive control, is shown in E. Tissues analyzed included kidney, liver, pituitary, day 15 conceptuses (pooled), and endometrium at days 3, 7, 10, and 16 of estrous cycle and at day 16 of pregnancy (16p) and negative RT control (reverse transcriptase was not included in this reaction that contained a mixture of RNA from all samples) as template are identified at top.

 
DNA sequencing and sequence analysis
All cDNA clones were sequenced in both directions by Sanger’s dideoxynucleotide chain termination method (44). The sequence identities of cDNA and protein were acquired by using the Wisconsin Genetics Computer Group (Madison, WI) software package. Gene Works 2.3 (IntelliGenetics, Mountain View, CA) software was employed to generate multiple amino acid sequence alignments.

RNase protection assay and densitometry
Rase protection assays were carried out by using a High-Speed Hybridization Ribonuclease Protection Assay Kit (Ambion, Austin, TX) according to the manufacturer’s protocol. Animal treatment and RNA isolation were as described earlier. For each time point, one, two, or three animals were used, depending on availability. Each analysis was repeated at least twice. Briefly, 20 µg total RNA and 105 cpm cRNA probe (generated by in vitro transcription with [{alpha}-32P]CTP) were coprecipitated by ethanol, resuspended in 10 µl hybridization buffer, and denatured at 95 C for 5 min. Hybridization was carried out by incubating at 68 C for 10 min. An RNase A/T1 mixture was then added and incubated for 30 min at 37 C to digest the unannealed RNA. The RNases were inactivated, and the probe-RNA duplex ethanol precipitated. The precipitate was resuspended in RNA loading buffer and analyzed by electrophoresis on a 5% polyacrylamide gel containing urea (43). The gel was dried at 80 C, and the protected bands were detected by autoradiography. The autoradiographs were scanned, and the densities of the bands were measured by using the software GPTOOLS (Biophotonics, Ann Arbor, MI). The statistical analysis of data and plot were done by using the Cricket Graph software (Cricket Software, Malvern, PA).


    Results
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
Cloning of cDNA for ovIFNAR1, ovIFNAR2, and boIFNAR2
The sequence of the cDNA for boIFNAR1 and the amino acid sequence inferred from it have been reported previously (31, 32). By screening the day 17 cDNA library with the probe supplied by Dr. G. Uzé (31), we confirmed that the same receptor subunit mRNA was expressed in bovine endometrium as in other tissues. The bovine cDNA probe was then used to screen an ovine cDNA library prepared from endometrial tissue of a ewe at day 12 of the estrous cycle, when type I receptors are known to be expressed (27, 45, 46). The cDNA from six positive clones (out of 3.2 x 105 phage plaques screened) were purified and sequenced. Although none of them was long enough to represent a full-length transcript of the gene, their sequences could be merged to provide a 2914-bp cDNA sequence (GenBank Accession number U65978) that contained a 1683 bp ORF, a 124 bp 5' UTR, and a 1107 bp 3' UTR. The ORF was the same length as that of the boIFNAR1 cDNA cloned by others (31, 32). Subsequent RT-PCR from day 12 endometrium allowed a full-length cDNA of this ORF to be cloned. The cDNA sequence was 359 bp longer than the 2559-bp ovIFNAR1 cDNA reported recently by Kaluz et al. (47), largely because of a longer and clearly dissimilar 3' UTR. The two were 99.7% identical in sequence within the ORF.

A cDNA for ovIFNAR2 was also obtained from the day 12 ovine endometrial cDNA library by homology screening using a cDNA probe representing part of the extracellular domain (amino acids 74–204) of huIFNAR2 and obtained from human Daudi cells by RT-PCR. A single ovine clone (H1, Fig. 1Go) of 1890 bp was isolated out of 7.5 x 105 plaques screened. This cDNA, when compared with the huIFNAR2, lacked the entire 5' UTR as well as the 5' end of the ORF. This missing sequence was rescued by using the RACE procedure. The complete ovIFNAR2 cDNA (GenBank Accession number U65979) was 2309 bp in length and contained a 1560-bp ORF, a 129-bp 5' UTR, and a 620-bp 3' UTR.

A boIFNAR2 cDNA was also cloned from a bovine endometrial cDNA library (48) by screening with the 32P-labeled ovIFNAR2 cDNA described above. Eight positive clones were purified out of 4.2 x 105 plaques screened, and three of them were sequenced. The longest clone was 2714 bp in length and contained an entire 1593-bp ORF, 266 bp 5' UTR, and 855 bp 3' UTR (GenBank Accession number U75304).

General comparison of primary structures
The inferred amino acid sequences of the IFNAR1 and IFNAR2 polypeptides from human, cow, and sheep are shown in Figs. 2Go and 3Go. As expected, there is extensive sequence similarity between ov- and boIFNAR1 (92% identity) reflecting the close evolutionary relationship of these two species. Differences between ovIFNAR1 and its human (29) and murine (30) counterparts were extensive (67% and 47% amino and sequence identities, respectively) (Table 2Go). The placement of the eight extracellular cysteine residues is identical in ov-, bo-, and huIFNAR1, however, and consistent with cytokine receptor family membership, as is the single 23 amino acid transmembrane sequence and a proline-rich Box-1-like motif in the cytoplasmic region adjacent to the membrane (Figs. 2Go and 3Go).



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Figure 2. Alignment of hu-, bo-, and ovIFNAR1 subunits. Consensus sequence is shown above three inferred sequences. Identical amino acids are represented by dots, and only amino acid mismatches are displayed for each protein. Inferred signal peptides (50) and transmembrane domains of each protein are underlined. Numbered boxes are conserved Cys residues (2/SD100 subdomain) typical of class II cytokine receptors (28). Potential N-glycosylation sites are labeled either by • (conserved across three species) or {blacksquare} (only conserved within bovine and ovine species). Sequences resembling a Pro-rich Box-1-motif and a strictly conserved Tyr residue (*), which, when phosphorylated, is the docking site for STAT2 (35), are marked. Boxes labeled $ are three conserved clusters of amino acids which in huIFNAR1 are required for binding of Tyk2 (34).

 


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Figure 3. Alignment of huIFNAR2c, boIFNAR2, and ovIFNAR2. Consensus sequence is shown above three sequences. Signal peptides, inferred by method of von Heijne (50), may be longer in ovine and bovine proteins than in human proteins. Four conserved Cys residues in each extracellular D200 domain are numbered. Potential sites for N-glycosylation are labeled with •, if conserved across all three species, and with {blacksquare}, if only conserved in bovine and ovine species. A Box-1-like motif, a proline (#), which is potentially important in signal transduction, and six acidic regions (A1–A6) are labeled. Shaded boxes show five amino acid repeats (SLEDC motifs) repeated twice in bovine protein and three times in ovine protein but absent in human protein.

 

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Table 2. Percentage identities between amino acid sequences of ovine, bovine human, and murine type I interferon receptor subunits

 
The IFNAR1 subunit from human, sheep, and cow each possess eight fully conserved sites (Asn-X-Thr/Ser) that are potentially used in N-glycosylation. Three additional such sites are conserved between sheep and cow, but are not present in the huIFNAR1. All three subunits retain the three short peptides (marked with the $ symbols in Fig. 2Go) that are considered necessary for the cytoplasmic segment of the receptor to associate with the tyrosine kinase Tyk2 (34). The tyrosine residue, which on huIFNAR1 becomes phosphorylated by Tyk2 following ligand binding (35) and which is placed between the Box-1-like motif and the transmembrane domain, is also conserved in the bovine and ovine receptors. This residue, once it is phosphorylated, becomes the docking site for STAT2 (35). The two tyrosine residues Tyr327 and Tyr538 of huIFNAR1, which are required for recruiting STAT3 to the receptor upon ligand-dependent phosphorylation (36), are also conserved across the three species (Fig. 2Go).

The ov- and boIFNAR2 subunits exhibit 88% overall amino and sequence identity with each other, but less than 60% identity with their human homolog. The placement of the four cysteines in the extracellular domain is strictly conserved. The extracellular domain of the hu-, bo-, and ovIFNAR2 proteins have three common, conserved potential sites for N-glycosylation. The proteins in sheep and cattle share two additional such sites (Fig. 3Go). Between the transmembrane domain and the Box-1-like motif, there is also a conserved proline (marked # in Fig. 3Go), which has been interpreted to be important in binding of the JAK1 kinase to the interferon-{gamma} receptor subunit 1 (IFNGR1) (49). Finally, there are six relatively conserved acidic domains (marked A1 through A6 in Fig. 3Go) whose functions are unknown.

In addition to the above features shared between the huIFNAR2c and its bovine and ovine homologs, there are some clear differences. For example, bo- and ovIFNAR2 are slightly longer, having an eight amino acid extension at their carboxyl ends. Both possess a five amino acid SLEDC (ser-leu-asp-glu-cys) motif, repeated three times in ovIFNAR2 and twice in boIFNAR2, which is absent in the human protein (shaded boxes in Fig. 3Go). The significance of this sequence is unknown.

Finally, the inferred lengths of the signal sequences as determined by the method of von Heijne (50) differ between the human and bovine/ovine polypeptides. Compared with their human homolog, the bo- and ovIFNAR1 would appear to have a shorter signal peptide due to a favorable cleavage site following Gly 17. In the case of IFNAR2, the most optimal position for signal cleavage is found further downstream than in the bovine and ovine sequences. In the absence of amino terminal sequence data from the purified subunits, these inferences must, of course, remain tentative.

Expression of ovIFNAR1 and ovIFNAR2 in the ewe
RNA from a day 12 endometrium had been chosen as a starting point for cloning the cDNA for the two subunits of the ovine type I IFN receptors because high-affinity receptors for IFN-{tau} had clearly been demonstrated at this stage (45, 51). RT-PCR was employed to determine whether the same mRNA was expressed at other stages of development, as well as in other tissues of ewes. To ensure that the amplified DNA represented the IFNAR1 and IFNAR2 transcripts, Southern blotting was performed with probes nested within the anticipated products. As a positive control, primers designed to amplify cDNA for the housekeeping gene glyceraldehyde 3-phosphate dehydrogenase (G3PD) were included in a separate PCR reaction. The data confirmed that mRNA for both subunits was present in day 12 uterine endometrium but was absent in day 15 conceptuses (Fig. 4Go). These observations have been confirmed in three separate experiments. Whereas the concentrations of IFNAR1 mRNA seemed comparable in endometrium, kidney, liver, and pituitary, IFNAR2 mRNA seemed to be more highly represented in the latter three tissues than in endometrium.

The mRNA for both subunits could be detected in endometrium at days 3, 7, 10, and 16 of the estrous cycle. The significance of the low amount of amplified IFNAR1 transcript at day 16 of pregnancy in this experiment is unclear in the light of the RNA protection assays described next.

Quantitative RNase protection assays of IFNAR1 and IFNAR2 mRNA in endometrium
To determine the relative changes in expression pattern of IFNAR mRNA during the estrous cycle and early pregnancy, quantitative RNase protection assays were performed. In this case, the cRNA probe used for ovIFNAR1 corresponded to the first 480 nt of the ovIFNAR1 cDNA and therefore largely represented 5' UTR. The probe for IFNAR2 mRNA was defined by primers 8S and 3A (Fig. 4AGo) and represented part (258 nt) of the cytoplasmic domain. Because the protected fragments of ovIFNAR2 (258 nt) and that of the internal control G3PD (280 nt) have similar lengths and are not easily separable by electrophoresis, the expression of ovIFNAR2 was normalized relative to ovIFNAR1 mRNA (Fig. 5BGo), and the latter was measured relative to the content of G3PD mRNA (Fig. 5AGo), which is assumed to remain relatively constant through the cycle and during pregnancy. The RNase protection assays that used these probes gave well-defined protected bands (Fig. 5Go), but additional smaller fragments were invariably present. Although the origin of these fragments is not clear, they may have resulted from mRNA species that were partially, but not fully protected by the probes.



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Figure 5. Quantitative RNase protection assays for ovIFNAR1 and ovIFNAR2 transcripts in sheep endometrium of different days of estrous cycle and pregnancy. Lengths of protected fragments are labeled on right side. A, Measurement of ovIFNAR1 mRNA relative to G3PD mRNA. Lane A, G3PD cRNA probe (630 nt); lane B, ovIFNAR1 probe (550 nt); lane C, mixed probes of G3PD and ovIFNAR1; lane D, yeast RNA, used as negative control, failed to protect both probes; lane E, G3PD probe protected by day 3 nonpregnant RNA; lane F, ovIFNAR1 probe protected by same day 3 RNA as in lane E. Remaining lanes correspond to G3PD and ovIFNAR1 probes protected by different endometrial RNA samples (days 3, 7, 10, 12, and 16 from nonpregnant ewes; days 15, 16, and 19 from pregnant ewes). B, Measurement of ovIFNAR2 mRNA relative to ovIFNAR1 mRNA. Lane 1, ovIFNAR1 cRNA probe (550 nt); lane 2, ovIFNAR2 probe (366 nt); lane 3, mixed probes of ovIFNAR1 and ovIFNAR2; lane 4, yeast RNA, used as negative control, in presence of both probes; lane 5, ovIFNAR1 probe protected by day 3 nonpregnant RNA; lane 6, ovIFNAR2 probe protected by same day 3 RNA as in lane E. Remaining lanes correspond to ovIFNAR1 and ovIFNAR2 probes protected by different endometrial RNA samples (days 3, 7, 10, 12, and 16 from nonpregnant ewes; days 15, 16, and 19 from pregnant ewes).

 
As anticipated from the RT-PCR experiments described earlier in Fig. 4Go, the quantities of neither subunit mRNA changed significantly relative to the G3PD control between days 3–16 of the estrous cycle (Fig. 6Go). If it is assumed that the specific activities per unit length of each probe were identical, the protected fragment for IFNAR1 would be expected to contain approximately 1.9x (480 nt/258 nt) as much 32P as that for IFNAR2. On this basis it would appear that the relative concentrations of the two mRNA were quite similar on each day of the cycle that was examined.



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Figure 6. Changes in mRNA expression of ovIFNAR1 and ovIFNAR2 in endometrium of ewes during estrous cycle and early pregnancy. Densitometry was performed on autoradiographs shown in Fig. 5Go, and amounts of each subunit mRNAs presented as ratio of optical density of receptor band relative to that of G3PD band. Numbers in parentheses are number of ewes used to generate each data point.

 
Although only a few animals were examined, the mRNAs for both receptor units were higher in day 15–16 pregnant ewes than in nonpregnant ewes. This increase was more marked for IFNAR2 than for IFNAR1.


    Discussion
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
The cloning of the ovIFNAR1 cDNA, described in detail above, was first reported in an abstract 2 yr ago (40). This sequence is 99.7% identical to the ovIFNAR1 cDNA recently published by Kaluz et al. (47), and both encode a polypeptide of 560 amino acids out of which there are two mismatches (amino acids 352 and 522). This high degree of similarity does not extend over the entire cDNA. The two sequences, for example, show almost complete identity until 476 bp beyond the stop codon. Over the remaining regions (635 bp for our sequence and 327 bp for the Kaluz sequence), the two show no evident homology at all. Because there are no data available concerning the genomic structure of the ovIFNAR1 gene, it is unclear whether these two cDNA represent transcripts from different genes or differentially spliced forms of the same precursor mRNA. Both cDNA encode a 560-amino acid polypeptide with a single transmembrane anchoring domain and would appear to represent the ovine homolog of the huIFNAR1 (29), which is represented by only a single gene (52). In particular, the four immunoglobulin-like SD100 extracellular subdomains, with their characteristic pairs of cysteine residues, are conserved. Also, as pointed out in Results, the cytoplasmic region of the ovine protein has retained the main signal-transducing features of huIFNAR1, including the Tyk2 and STAT2 binding sites.

Recently, two groups have described splice variants of the huIFNAR1 (17, 37). One of these splice variants, a form lacking the second SD100 domain, was responsive to certain type I IFN but not to all (17). This discovery raised the possibility that the endometrium might express a form of the receptor uniquely adapted to IFN-{tau} signaling. Although no systematic effort has so far been made to define splice variants of IFNAR1 in ovine or bovine endometrium, the amplification of reverse transcribed mRNA with primers selected from within the 3' and 5' UTR, for example, has revealed no evidence for short forms similar to those described by Cook et al. (17). Consequently, it seems likely that the major form of the type I IFN receptor in the endometrium, and hence used by IFN-{tau}, has the full-length IFNAR1 as one of its subunits. Kaluz et al. (47), using Northern blotting, reported one major (6.5 kb) and two minor bands (4.3 and 3.7 kb). It is unclear which of these bands corresponds to the IFNAR1 subunit cloned in our study and whether any represent splice variant forms. Smaller splice variants might be overlooked by PCR amplification techniques if the full-length form is present in much greater abundance.

In the human, IFNAR1 alone has very low affinity for type I IFN, such as IFN-{alpha}, and requires the presence of the second subunit IFNAR2c to bind IFN and to participate in IFN signaling (39). huIFNAR2, on the other hand, can bind both IFN-{alpha} and -ß with high affinity, but needs IFNAR1 as a signaling partner. This study provides the first report of the structures of IFNAR2 from cattle and sheep. Only the human sequence has previously been published (39). The boIFNAR2 was fairly well conserved (88% amino acid identity) compared with its ovine homolog but had diverged extensively from huIFNAR2c (62% and 56% identity in the extracellular and intracellular regions, respectively). This result was somewhat surprising, because most huIFN-{alpha} (3, 7, 10) are at least as active on bovine cells as boIFN-{alpha} and presumably bind the bovine receptor with high affinity. A comparison of the sequences of the extracellular region reveals that the most distal segment of the first SD100 domain on the three IFNAR2 proteins is well conserved. This portion of the molecule, plus a few other regions of conserved sequence in the second SD100 domain, may form the primary contacts with ligand. The intracellular regions of bo- and ovIFNAR2 also retain most of the general features of the human protein, including the six acidic domains and a proline-rich Box-1-like motif.

As reviewed in the Introduction, at least three forms of IFNAR2 have now been recognized, a soluble form representing only the extracellular portion of the molecule, a membrane-bound form with a truncated cytoplasmic domain, and the full-length receptor. Screening of both ovine and bovine cDNA libraries has so far only revealed the presence of the long form (comparable to huIFNAR2c), but again no systematic study has yet been conducted to detect transcripts for shorter splice variants. For example, the oligonucleotides used to amplify IFNAR2-related transcripts (Fig. 4AGo) would not have detected either of the two shorter forms discussed above. They would also have failed to detect mRNA encoding polypeptides that had alterations in their extracellular regions. Therefore, it is not yet possible to decide whether some of the endometrial receptor complexes contain unusual splice variant forms of IFNAR2.

The experiments have corroborated results from binding studies (51) that there is not great variability in the expression of the type I receptor during the estrous cycle. The concentrations of both mRNA were comparable and remained relatively constant on the 5 days of the cycle examined. Their expression would appear not, therefore, to be strongly influenced by sex steroid hormones. A more complete analysis will require in situ hybridization to distinguish receptor mRNA present in the uterine epithelium from that in stroma, blood vessels, and other cell types. Rather than decreasing during pregnancy, when IFN-{tau} concentrations in the uterine lumen are high, there appeared to be an up-regulation of receptor mRNA concentrations, although this result needs to be confirmed by using more animals.

The one tissue examined that was completely devoid of receptors was the day 15 conceptus, which is comprised largely of trophoblast and which in vivo is producing very large quantities of IFN-{tau} at that stage of pregnancy. Perhaps this absence of receptor expression is necessary to avoid cytotoxic or other side effects on the embryo during the period in which IFN-{tau} is being produced. It will be of interest to determine precisely when during pregnancy the trophoblast becomes responsive to type I IFN and potentially capable of resisting viral infection. During the time of IFN-{tau} production, the uterine epithelium is likely to act as an effective barrier to virus as well as the site at which IFN-{tau} effects are transduced to prevent luteolysis (19).

In conclusion, these experiments provided the primary structures of IFNAR1 and IFNAR2 in sheep and IFNAR2 in cattle. They indicate that the full-length forms of the receptor subunits are expressed in the endometrium but not in the conceptus during the time of IFN-{tau} production by embryonic trophectoderm. There was no indication that the endometrial forms of the receptor complex contained splice variants of either subunit, but the presence of such forms has not been ruled out.


    Acknowledgments
 
We thank Dr. G. Uzé (Institute de Genetique Moleculair, CNRS, Montpellier, France) for kindly providing the pMD56 plasmid, which contained the boIFNAR1 cDNA, and Dr. T.R. Hansen (Department of Animal Sciences, University of Wyoming, Laramie, WY) for supplying the bovine endometrial cDNA library. We also thank R.V. Omo and J.S.A. Malik, undergraduate students at Rollins College, for their assistance in the cloning of ovIFNAR1 cDNA.


    Footnotes
 
1 This work was supported by Grant R37-HD-21896 from the National Institutes of Health. Back

Received May 27, 1997.


    References
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 

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