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Endocrinology Vol. 138, No. 7 2813-2819
Copyright © 1997 by The Endocrine Society


ARTICLES

Tissue-Specific Expression of the Bovine Aromatase-Encoding Gene Uses Multiple Transcriptional Start Sites and Alternative First Exons1

Rainer Fürbass, Claudia Kalbe and Jens Vanselow

Research Institute for the Biology of Farm Animals, 18196 Dummerstorf, Germany

Address all correspondence and requests for reprints to: Dr. R. Fürbass, Forschungsinstitut für die Biologie landwirtschaftlicher Nutztiere, Wilhelm-Stahl-Allee 2, 18196 Dummerstorf, Germany. E-mail: fuerbas{at}uranus.fbn.uni-rostock.de


    Abstract
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
Here we report on the genomic structure of the bovine aromatase cytochrome P450-encoding gene (Cyp19) and its tissue-specific transcript variants. The gene comprises at least 14 exons (1.1, 1.2a, 1.2b, 1.3, 1.4, and 2–10) spanning more than 56 kilobases of genomic DNA. The coding area is confined to exons 2–10. Transcriptional start sites of Cyp19 were examined in granulosa cells, placenta, testis, adrenal gland, and brain, employing 5'-RACE (rapid amplification of complementary DNA ends) and primer extension. The analysis of 5'-RACE clones revealed six Cyp19 transcript variants that were different within their 5'-untranslated regions (5'-UTR). Yet, the coding region was identical in all clones. Although two of these 5'-UTR (the first 152 nucleotides of exon 2 and exon 1.4) are conserved among different species, four others (exons 1.1, 1.2a, 1.2b, and 1.3) did not show sequence homology to any other species. Transcription from exons 1.1 and 2 starts at several adjacent sites. In granulosa cells and placenta, but not in brain, a fraction of transcripts starting with exon 1.2a contains an additional untranslated exon, 1.2b, due to alternative splicing. Transcript variants comprising exon 1.1, 1.2a, 1.2b, or 1.3 were mainly found in the placenta, those with the 5'-UTR of exon 2 were predominant in granulosa cells, and transcripts with exon 1.4 prevailed in the brain. Estimates of Cyp19 transcript concentrations in six different tissues revealed high levels in granulosa cells and placenta, intermediate levels in testis and brain, and low levels in adrenal gland and liver. Our experiments demonstrate that six transcript variants of the bovine Cyp19 gene, including 9–11 exons, are expressed with tissue-specific preferences. These transcripts are presumably generated using five different promoter regions and tissue-specific alternative splicing.


    Introduction
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
THE KEY ENZYME of estrogen biosynthesis, aromatase cytochrome P450, is encoded by the Cyp19 gene. In cattle, this gene has been mapped to band q2.6 of chromosome 10 (1). The main sites of Cyp19 expression are the ovary and, in humans and cattle, the placenta. However, during development, differentiation, and to a minor extent throughout adult life, Cyp19 transcripts have been found in many organs, such as skin, adipose tissue, brain, and adrenal gland (2, 3, 4). In humans, tissue-specific expression of the gene is regulated by the use of various, spatially separated promoter regions. This results in transcript variants with different 5'-untranslated regions (5'-UTRs) (reviewed in Ref. 5).

Until recently, in other mammalian species only transcripts starting with the 5'-UTR of exon 2 have been described. It was first discovered in cattle that transcripts with different 5'-UTR also exist in nonhuman species. Bovine placental complementary DNA (cDNA) clones revealed a previously unknown first exon that, interestingly, does not show any homology to human placental transcripts (6, 7). In the meantime, it has been demonstrated in rodents that a brain-specific first exon that is homologous to that of the human gene is present (8, 9, 10).

As Cyp19 plays an important role in the development, function, and regulation of the female reproduction cycle, we consider it to be a potential candidate gene affecting fertility performance in cattle. In this regard, we are interested in elucidating the mechanisms of its regulation and its tissue-specific expression as an approach toward understanding its physiological role in reproduction. Secondly, we are searching for gene variants that might influence fertility performance. For this purpose, detailed structural and sequence data of the cattle gene itself are an essential prerequisite. Therefore, we set about to clone the entire Cyp19 gene, to analyze its structure, and to identify its promoter sequences.

For promoter definition, we first systematically analyzed the 5'-ends of Cyp19 transcripts isolated from various tissues with the 5'-RACE (rapid amplification of complementary DNA ends) approach. We also estimated the level of Cyp19 expression by reverse transciption-PCR (RT-PCR) to elucidate the importance of transcript variants to the tissues investigated.


    Materials and Methods
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
Analysis of the genomic structure
Library screening with bovine Cyp19 cDNA probes (6) and DNA analysis were performed according to standard procedures (11). For restriction analysis and partial sequencing, subclones were established in pBluescript (Stratagene, Heidelberg, Germany).

Sequencing was performed with the PRISM Ready Reaction Dye Deoxy Terminator Cycle Sequencing Kit (Applied Biosystems, Weiterstadt, Germany). Extension products were analyzed on the Applied Biosystems model 373A DNA Sequencing System.

Long range PCR using genomic DNA as template was performed with the Expand Long Template PCR System (Boehringer Mannheim, Mannheim, Germany), as recommended by the supplier.

RNA isolation
Except for placenta, all tissues were dissected from freshly slaughtered animals. Placental tissue was obtained from two Black Pied cows after parturition. Adrenal glands, testicular tissue, livers, and kidneys were dissected from 18-month-old Angus bulls, and the hippocampus region was dissected from a 4-week-old female Galloway calf. The tissue samples were frozen in liquid nitrogen before processing. Granulosa cells from Black Pied cows were aspirated from follicles after dissection of the ovaries and immediately processed for RNA preparation.

RNA was isolated with the RNeasy kit (Qiagen, Hilden, Germany), as recommended by the supplier.

Primer extension
The antisense primer 1.1p.e. (Table 1Go and Fig. 3Go) was labeled at its 5'-end using [{gamma}-32P]ATP and T4 polynucleotide kinase (11). The radiolabeled primer was annealed to 40 µg total placental RNA and subsequently extended with 200 U Moloney mouse leukemia virus reverse transcriptase (Life Technologies, Eggenstein, Germany) for 10 min at 20 C, 10 min at 37 C, and 30 min at 42 C. The extension products were analyzed on a 5% sequencing gel (19:1, acrylamide-bisacrylamide-7 M urea), next to the sequence ladder of the corresponding genomic DNA. For sequencing, the dsDNA Cycle Sequencing System (Life Technologies) and the radiolabeled primer were used.


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Table 1. Primers used for PCR, RT-PCR and primer extension analysis

 


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Figure 3. Genomic structure of the Cyp19 gene illustrating exons that encode different 5'-UTR variants. Exons are depicted as boxes; introns are shown as horizontal lines. Primer names, positions, and orientations are shown with arrows. Exon 2 contains the translation start codon (ATG) and a splice acceptor (short vertical stippled line) that is used when transcription starts with exon 1.1, 1.2a, 1.3, or 1.4. The angled stippled lines connect potential splice donors and acceptors. In the case of exons 1.2a and 1.2b, alternative RNA processing is shown with differently formatted stippled lines.

 
5'-RACE
5'-RACE (12) was carried out with the 5'/3'-RACE Kit (Boehringer Mannheim). RT was performed with antisense primer 5, which is specific for exon 5 (Table 1Go). For the first amplification, primer 3a (Table 1Go and Fig. 3Go) was used in combination with the deoxythymidine17 adapter primer (12). For the second, nested amplification, antisense primer 3b was combined with the adapter primer. Primer 3b includes a recognition site for the restriction enzyme SpeI (underlined in Table 1Go), facilitating cloning.

RT-PCR
RT was carried out with 2 µg of a total RNA preparation, antisense primer 5 (Table 1Go), and Moloney mouse leukemia virus reverse transcriptase (Life Technologies) in 20 µl of the incubation buffer provided by the supplier, supplemented with deoxy-NTPs and RNAsin (Promega, Heidelberg, Germany), for 60 min at 37 C. Subsequently, the cDNA was diluted with 80 µl H2O. Five microliters of the dilution were used as template for PCR analysis.

Subsequent PCR was performed with Taq DNA polymerase (Appligene, Heidelberg, Germany) in 50 µl of the incubation buffer provided by the supplier, supplemented with deoxy-NTPs and sense and antisense primers (Table 1Go and Fig. 3Go), for 30 reaction cycles.

We assessed the Cyp19 transcript concentrations within different tissues, based on the quantity of PCR products after the first and second amplifications, as estimated by ethidium bromide-stained 4% agarose gels (see Fig. 2Go).



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Figure 2. RT-PCR experiment after the first (1 ) and second (2 ) amplification of Cyp19 transcripts from six different tissues with primer pairs specific for the constant region downstream from the splice acceptor in exon 2 (see Fig. 3Go) and for different 5'-UTR variants (exons 1.1, 1.2a, 1.3, 1.4, and 2). The PCR fragments were separated on a 4% agarose gel stained with ethidium bromide. From this analysis transcript concentrations were estimated: a strong PCR band after the first amplification indicates a high concentration, a weak PCR band after the first amplification indicates an intermediate concentration, and PCR product visible after the second amplification indicates a low concentration. A negative control (-) was carried with all PCR reactions during both amplifications to exclude contaminations of the PCR reagents. During the second amplification, positive control fragments (+) were amplified from corresponding cDNA clones. Fragment sizes are indicated in base pairs (left column, fragment sizes after the first amplification; right column, fragment sizes after the second amplification). Fragments from the second amplification are smaller by 81 bp because of the nested position of the second antisense primer (see Fig. 3Go). RNA from granulosa cells and placenta constantly gave rise to two different fragments using exon 1.2a-specific primers during the first and second amplifications, whereas from hippocamus RNA, only the small fragment was present, thus demonstrating tissue-specific alternative splicing. Gran. cells, Granulosa cells; Adr. gland, adrenal gland; Hippoc., hippocampus.

 
Two-step PCR was performed as nested PCR, employing, consecutively, the antisense primers 3a and 3b to avoid the amplification of unspecific products. For the first amplification, 5 µl diluted cDNA (see above) were used as template; for the second amplification, 1 µl of the PCR product from the first reaction was used.

For amplification of the constant region of Cyp19 messenger RNA, both antisense primers were consecutively combined with primer 2b, which is located downstream from the splice acceptor site within exon 2. To selectively detect transcripts with different 5'-UTRs that were identified in prior 5'-RACE experiments, specific sense primers for each of the 5'-UTRs were designed (Table 1Go and Fig. 3Go). To prove their identity, nested PCR products were purified and directly sequenced.


    Results
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
Isolation of Cyp19 clones
Two bovine genomic libraries established with the phage vector {lambda}EMBL3, were screened with various bovine cDNA probes (6), revealing six clones. A DNA stretch of 44 kilobases (kb) including exons 1.3–10 (Fig. 1Go) was covered by five overlapping clones. Exon 1.1 was found on a separated clone. The connecting DNA region has not yet been isolated despite extensive screening of both libraries. As anticipated, fragments of the highly homologous pseudogene Cyp19{psi} (13) were isolated on additional clones and were distinguished by PCR (not shown). However, these clones were not further analyzed.



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Figure 1. Organization of the cDNA and genomic structure of the bovine Cyp19 gene. cDNA, Schematic drawing of the main placental transcript with exon 1.1 as 5'-UTR. The coding region is delineated by the codons ATG (start) and TAA (stop). Exon borders are indicated with white lines. The asterisks specify integration sites of bovine retroposon elements. Gene, Genomic structure of Cyp19 with the coding region (exons 2–10) and three 5'-UTR (exons 1.1, 1.3, and 2). Exons are represented by vertical bars (not drawn to scale). The intronic DNA between exons 1.1 and 1.3 is shown interrupted, because this area has not been bridged entirely. The boundaries between exons and introns were determined by comparison of genomic and cDNA sequences, respectively. Map, Physical map of the Cyp19 DNA. The restriction enzymes used are: B, BamHI; E, EcoRI; H, HindIII; and K, KpnI. The sequence data have been submitted to the EMBL/GenBank Data Bank under accession numbers Z32741, Z69241Z69250, and Z82978.

 
Structure of Cyp19
The genomic region flanking exon 1.1 and that part of the gene spanning exons 1.3–10 were physically mapped by restriction analysis of the various clones (Fig. 1Go). Exon-specific PCR primers were derived from the known sequence of the bovine placental Cyp19 cDNA and the different 5'-RACE clones (see below). Subsequently, exons 1.1 and 1.3–10 were fitted into the restriction map by Southern blot hybridization, with exon-specific PCR fragments serving as probes (Fig. 1Go). Corresponding restriction fragments were subcloned for sequence analysis of the exons and their flanking DNA, respectively. The genomic sequence data of the present investigation confirmed that exon boundaries are conserved between homologous exons of the human and bovine Cyp19 genes. In addition, no difference was found between the published bovine placental cDNA and the corresponding genomic sequence. In fact, the 3'-UTR of the bovine messenger RNA, which is 2 kb longer than the corresponding human 3'-UTR, is confined to one very long exon, as previously anticipated based on cDNA analysis (6). Intron lengths range from 0.5 to more than 15 kb. The sequences at their 5'- and 3'-ends conform to the consensus sequences for mammalian introns (14). Ten retroposon elements dispersed throughout the gene (Fig. 1Go) were found in the course of sequence analysis. Of these elements, eight belong to the bovine dimer family, representing structural analogs of human Alu repeat elements (15).

Isolation of tissue-specific transcripts
RNA samples from seven different tissues were screened for total Cyp19 expression with a two-step RT-PCR. After the first amplification with primers 2b and 3a, only cDNA samples from placenta and granulosa cells gave rise to a clearly visible PCR product, whereas the yield was low with cDNA templates derived from hippocampus and testis. In adrenal gland and liver, Cyp19 transcripts could be detected only after the second amplification with primers 2b and 3b (Fig. 2Go). In RNA preparations from kidney we could not detect Cyp19 transcripts. Based on this analysis, Cyp19 transcript concentrations in placenta and granulosa cells were estimated to be high, those within hippocampus and testis were estimated to be intermediate, and those in adrenal gland and liver were estimated to be low. The results were reproducible in repeated experiments with different RNA preparations.

Except for liver, we could generate specific 5'-RACE products from all other tissues with detectable Cyp19 expression. From 42 analyzed RACE clones, 29 were derivatives from independent PCR products. Ten clones from granulosa cells and adrenal gland included a 5'-UTR that was homologous to the region upstream from the splice acceptor site of exon 2. They could be divided into 2 groups, based on the transcriptional start sites: 2 clones corresponded to start site 1, and 8 clones corresponded to start site 2 (see Fig. 5Go). Both start sites were previously described (7).



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Figure 5. Characterization of tissue-specific 5'-UTR and flanking promoter regions. Exons are indicated by uppercase letters. Transcription starts are printed in bold. The multiple transcription start sites found in exon 1.1 are numbered (see also Fig. 4Go). Translation of the Cyp19 transcripts starts at codon ATG with the amino acid Met. The dinucleotides, gt and AG, serve as splice donor and acceptor sites during processing of the transcripts. Various potential cis-acting elements are emphasized within the putative promoter regions: Hex, potential binding sites for the steroidogenic transcription factor SF1; NF-IL6, nuclear factor interleukin 6; USF, upstream stimulating factor; INR, transcriptional initiator region; TBP, TATA box-binding protein. The data have been submitted to EMBL/GenBank Data Bank under accession numbers Z69241, Z69242, and Z82977Z82979.

 
The 5'-UTR of the remaining transcript variants consisted of an additional first exon and a short part of exon 2. During processing of these Cyp19 transcripts, the dinucleotide AG within exon 2, located 40 nucleotides upstream from the translational start codon (ATG), was used as a splice acceptor for the various first exons (Figs. 3Go and 5Go).

In granulosa cells, placenta, testis, adrenal gland, and hippocampus, we found a first exon (exon 1.1) that was homologous to that of the major placental transcript previously described (6). However, the 5'-ends of only six RACE clones were consistent with the known transcriptional start site (7), called start site 2 during this study. Two longer clones started at site 1, one at site 4, and four at site 5 (Fig. 5Go). Primer extension experiments with placenta RNA confirmed these start sites. Moreover, they clearly showed the additional site 3, thus suggesting that exon 1.1 has multiple transcriptional start sites scattered over a DNA stretch of 99 bp. However, the extension product corresponding to start site 2 was the most prominent, indicating the preferential usage of this site (Fig. 4Go).



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Figure 4. Primer extension experiment with placenta RNA to map transcription start sites of exon 1.1. The numbered arrows indicate different extension products (lane R), loaded next to a sequence ladder of the corresponding genomic DNA (lanes A, C, G, and T).

 
One clone from placenta, three from testis, and two from hippocampus revealed 5'-UTR that we originally designated exons 1.2, 1.3, and 1.4 (Figs. 3Go and 5Go). Sequence analysis applying the DNASIS software (Pharmacia, Freiburg, Germany) demonstrated that exon 1.4 from hippocampus RNA has a highly similar, 93% sequence identity to the brain-specific first exon of the human and murine genes (8, 10), whereas exon 1.2 from placenta RNA and exon 1.3 from testis RNA did not show homology to any known sequence. Unexpectedly, a standard PCR with exon 1.2-specific primers 1.2a/1.2b (Table 1Go) did not yield a product with a genomic DNA template, but produced a fragment of 159 bp with the corresponding RACE clone (not shown). By using a long range PCR protocol, a genomic fragment of about 2 kb was amplified with the same primers (not shown). Subsequent sequence analysis from both ends demonstrated that exon 1.2 of the RACE clone in fact consists of two exons, which we call 1.2a and 1.2b in this report because exon 1.2b was only found in combination with the leading exon 1.2a. In the genome, both exons (1.2a and 1.2b) were separated by an intron of about 1.7 kb (Figs. 3Go and 5Go).

Tissue-specific distribution of transcript variants
To estimate the relative amounts of the transcripts identified with the 5'-RACE method in different tissues, we derived primers (1.1, 1.2a, 1.3, 1.4, and 2a; see Table 1Go) for all leading 5'-UTR and performed a two-step PCR analysis by combining these primers consecutively with the antisense primers 3a and 3b. Sequence analysis after reamplification confirmed that all primer combinations generated specific products. Transcripts with all different 5'-UTR were present in granulosa cells and placenta, some of them at high concentrations. However, in granulosa cell-derived transcripts, the 5'-UTR of exon 2 was present at a high concentration, and exon 1.1 was present at an intermediate concentration, whereas the majority of Cyp19 transcripts in the placenta started with exon 1.1 or 1.3 (Fig. 2Go). The remaining 5'-UTR variants were found at intermediate or weak concentrations in both tissues. In testis, all transcript variants could be detected at low concentrations, except those including exon 1.2a. In adrenal gland only transcripts with the 5'-UTR of exon 2 were present at low concentrations. In the hippocampus, transcripts with exon 1.4 were represented at intermediate concentrations, other transcript variants (1.2a and 1.3) at low levels. None of these 5'-UTR variants could be detected in liver tissue, although Cyp19 messenger RNA was undoubtedly present.

Surprisingly, exon 1.2a-specific RT-PCR (primers 1.2a/3b) generated two products (390 and 300 bp) when the cDNA was prepared from placenta or granulosa cells (Fig. 2Go). In contrast, when the cDNA was derived from hippocampus, only the shorter PCR product (300 bp) was amplified. Cloning and sequencing of the PCR fragments showed that the 390-bp fragment was derived from transcripts with a 5'-UTR composed of exons 1.2a and 1.2b. This corresponds to our 5'-RACE clone derived from placenta. The shorter fragment of 300 bp was derived from a transcript with only exon 1.2a as the 5'-UTR. Thus, in the hippocampus, Cyp19 transcripts do not include exon 1.2b, whereas in placenta and granulosa cells, transcripts with or without exon 1.2b are produced at comparable concentrations.

Tissue-specific promoters of Cyp19
The potential promoter regions upstream from exons 1.1, 1.3, and 2 (designated P1.1, P1.3, and P2 in this study) were sequenced and further examined with the computer program FACTOR of the EMBL Data Base (Heidelberg, Germany) to identify potential cis-acting regulatory elements.

Within a stretch of 2023 bp of the placental P1.1 region, the computer search revealed numerous potential factor-binding sites, some of which were of particular interest (Fig. 5Go). Apparently, there is no consensus TATA motif at an appropriate distance from any of the five transcriptional start sites. However, a putative transcriptional initiator region (INR) matching the consensus structure, (Py)2CA(Py)5 (16), spans the major transcriptional start site 2. In addition, two consensus binding motifs for the ubiquitous upstream stimulating factor (USF) were identified, one of them located 59 bp upstream from the transcriptional start site 2. Within the sequence studied, two potential binding sites for the nuclear factor interleukin-6 (NF-IL6) were also recognized as well as four CAAT transcription elements, which might be recognized by multiple factors. A hexameric sequence motif, AGGTCA (i.e. half of an estrogen receptor-binding site), occurs twice within P1.1. It was shown to bind the steroidogenic transcription factor (SF1), also known as Ad4BP (17, 18).

Of the second placental promoter, P1.3, 300 bp have been sequenced to date (Fig. 5Go). Beside the sequence AATAAA at position -27 resembling a consensus TATA box, only a CAAT motif at position -178 was identified.

As both promoter regions were shown to be most active within placental tissue, we compared them to the corresponding human Cyp19 promoter sequence (19, 20). This sequence comparison revealed no significant homology (<50%).

The proximal ovarian promoter region, P2, features two consensus TATA boxes, one of them located at position -29 of the transcriptional start site 1, and the other at position -30 of start site 2 (Fig. 5Go). In addition, three CAAT elements as well as a potential SF1 binding hexameric motif were found within the 1176 bp sequenced to date. This bovine promoter revealed a strong sequence similarity (80%) toward the corresponding regions of the human Cyp19 gene (19).


    Discussion
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
The bovine Cyp19 gene
The genomic region of the bovine Cyp19 gene covering exons 1.3–10 stretches over 44 kb and includes two different tissue specific exons. However, as has been described for the human gene (5), there are additional exons encoding 5'-UTR variants upstream from this area, of which only exon 1.1 has been cloned. Therefore, the actual physical order of these exons is unknown, and the length of the bovine Cyp19 gene locus cannot be determined precisely. However, it must exceed 56 kb.

Aside from those clones that could be unambiguously assigned to the pseudogene (13), no evidence emerged for the existence of additional Cyp19-related genes or isoforms recently detected in the porcine genome (21).

Our finding of 10 retroposon elements within the Cyp19 locus is consistent with the previously noted high frequency of occurrence of those elements within the bovine genome (15). There might be even more interspersed repetitive motifs in areas that have not yet been sequenced.

Expression of the Cyp19 gene
Transcripts of the Cyp19 gene could be detected in all tissues investigated, except kidney. However, the semiquantitative analysis, based on the two-step RT-PCR assay, revealed very different concentrations. These were low in adrenal gland and liver, on the one hand, and high in placenta and granulosa cells, on the other hand.

The classification into quantitative groups, of course, does not allow the determination of absolute transcript quantities, but the technique is appropriate for a rough estimate of tissue-specific differences in Cyp19 expression.

In the liver, low concentrations of Cyp19 transcripts were detected reproducibly with primers specific for a constant region of the gene, although 5'-UTR-specific RT-PCR did not yield any products. Cyp19 expression might, therefore, be driven by a yet unidentified liver-specific promoter region, resulting in a new transcript variant. However, because liver was the only tissue in which repeated 5'-RACE experiments did not generate any products, we prefer another interpretation; several promoter regions might contribute to Cyp19 expression, but the various 5'-UTR of these transcripts might be below the threshold of detection. This does not exclude a functional relevance of Cyp19 transcripts in the liver, but could also be a consequence of a leaky transcriptional regulation of Cyp19 expression.

The observed abundance of Cyp19 transcripts in granulosa cells and placenta is consistent with previous investigations demonstrating that these tissues show the highest aromatase activity and Cyp19 expression in humans and cattle (5).

Transcript variants in different tissues
From granulosa cells, placenta, testis, adrenal gland, and hippocampus we could isolate Cyp19 transcript variants with six different 5'-UTRs. Four of them (exon 1.2a, 1.2b, 1.3, and 1.4) have not previously been described in cattle. In granulosa cells and placenta, all variants were detected with RT-PCR. However, the main transcripts were not identical in the two tissues.

The concentration of transcript variants clearly suggests that in granulosa cells the most important transcript is driven by the promoter region upstream from exon 2, P2. This is the most proximal promoter of the Cyp19 gene, and it has been described in several other species. Therefore, it was thought (5) that it is the primordial Cyp19 promoter. In cattle, our experiments as well as others (7) demonstrate two distinct transcriptional start sites in this region with two canonical TATA boxes at appropriate locations. The potentially hexameric SF1 binding motif found in P2 is also present in the promoter regions of all steroidogenic P450 genes studied to date (17, 18). It was shown to enhance transcription of those genes in a cAMP-dependent manner (22, 23, 24). As no classical cAMP-responsive element was identified, it is reasonable to assume that SF1 binding might also confer cAMP responsiveness on the bovine promoter 2.

The promoter adjacent to exon 1.1, P1.1, might also have a functional role in granulosa cells, because transcripts comprising this 5'-UTR variant were found at intermediate concentrations. The importance of the remaining transcript variants is unclear, as they were present at considerably lower levels.

In the placenta we detected two major Cyp19 transcript variants. One variant, comprising exon 1.1, has previously been suggested to represent the major placental transcript (6, 7). The other, harboring exon 1.3, a yet undescribed 5'-UTR, was also found at high concentration. Surprisingly, we found that multiple transcriptional start sites are used within exon 1.1, being scattered over a range of 99 bp. This could be confirmed with two independent experimental strategies (5'-RACE and primer extension). One explanation for this kind of "fuzzy" transcription initiation could be the apparent lack of consensus TATA elements within promoter 1.1. However, start site 2 is obviously preferred, probably due to the potential transcriptional INR spanning this area. It has been shown by others (25), that such elements can substitute for a missing TATA box. In this regard, the putative binding sites for the USF are interesting, as it has been demonstrated that USF can cooperatively interact with an INR-bound factor (26). In addition, USF was shown to mediate the interaction of the transcription factor IID with a TATA-deficient promoter (27). Interestingly, although the major placenta-specific promoters in human and cattle (PI.1 and P1.1) are unrelated, as demonstrated by sequence analysis, both contain consensus binding motifs for the NF-IL6, a member of the CCAAT/enhancer-binding protein family. This motif seems to be of functional importance for Cyp19 expression in the placenta, as Toda et al. (28) demonstrated that NF-IL6 interacts with the placenta-specific promoter of the human Cyp19 gene. Transcript variants with a leading exon 1.2a were found in the placenta at intermediate concentrations. Surprisingly, these transcripts vary in length depending upon whether they include exon 1.2b. Thus, the promoter region adjacent to exon 1.2a can initiate two different transcript variants as the result of alternative splicing.

In several areas of the mammalian brain, among them the hippocampus as a part of the limbic system, considerable Cyp19 transcript concentrations and aromatase activity have been demonstrated (2, 29). For this reason and because of its well defined morphology, we choose the hippocampus to represent the brain. Exon 1.4 clearly was the most prominent first exon variant in the hippocampus. Intermediate concentrations of this specific transcript were estimated. The nucleotide sequence of exon 1.4 is homologous to brain-specific transcripts in primates and rodents (8, 10, 30). This suggests that brain-specific Cyp19 expression driven by the promoter upstream from exon 1.4 is of functional importance. Our observation that none of the transcripts with a leading exon 1.2a that were detected in the hippocampus included exon 1.2b, in contrast to those found in granulosa cells and placenta, clearly demonstrates tissue-specific alternative splicing.

As expected from other investigations (31), we found Cyp19 expression in testis, but at a lower level than in the ovary and placenta tissues. No predominant first exon was detected, although others (32) claim promoter 2 to be the most active one in the human testis from fetal to adult life. This discrepancy might be due to the low expression level in our tissue sample at the limit of detection rather than to functional differences between human and cattle.

In the adrenal gland, we found low transcript concentrations. Cyp19 expression was also reported in the porcine adrenal gland (4). The majority of 5'-RACE clones included the 5'-UTR of exon 2. With RT-PCR analysis, no other 5'-UTR could be detected within adrenal gland samples.

During this study we demonstrate six transcript variants of the bovine Cyp19 gene with clearly preferred sites of expression. This suggests that in cattle, various promoter regions also direct the expression of the Cyp19 gene to specific tissues, as described for the human gene (5). The occurrence of transcript variants with different 5'-UTR linked to an identical coding region might, therefore, be considered the result of mere tissue-specific transcriptional regulation without further relevance for the regulation of gene expression. However, our observation that transcripts starting with exon 1.2a are alternatively spliced demonstrates that 5'-UTR variants are generated even after transcription initiation from the same promoter region. This suggests that 5'-UTR variants may play a role for the regulation of downstream processes. The presence or absence of exon 1.2b in transcripts that start with exon 1.2a might result in different secondary structures of the 5'-UTR, which could affect the binding of ribosomes or other protein factors influencing the efficiency of translation (33). Also, they might influence the stability of the messenger RNA (34). Although experimental evidence is still missing, posttranscriptional regulation of gene expression on the RNA level could contribute to the complex expression pattern of the Cyp19 gene.


    Acknowledgments
 
We appreciate the excellent technical assistance of Maren Anders, Marlies Deutscher, and Ingrid Panicke. We also thank Drs. H.-M. Seyfert and D. Koczan for providing the {lambda}EMBL libraries.


    Footnotes
 
1 This work was supported by the Deutsche Forschungsgemeinschaft. Back

Received December 12, 1996.


    References
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 

  1. Goldammer T, Guérin G, Brunner RM, Vanselow J, Fürbass R, Schwerin M 1994 Chromosomal mapping of the bovine aromatase gene (cyp19) and an aromatase pseudogene to chromosome 10 and syntenic group U5. Mammalian Genome 5:826–827
  2. Lephart ED, Simpson ER, McPhaul MJ, Kilgore MW, Wilson JD, Ojeda SR 1992 Brain aromatase cytochrome P-450 messenger RNA levels and enzyme activity during prenatal and perinatal development in the rat. Mol Brain Res 16:187–192[Medline]
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