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*LIOTHYRONINE
Endocrinology Vol. 139, No. 5 2535-2544
Copyright © 1998 by The Endocrine Society


ARTICLES

The Thyroid Hormone Receptor Variant {alpha}2 Is a Weak Antagonist because It Is Deficient in Interactions with Nuclear Receptor Corepressors1

Tetsuya Tagami2, Peter Kopp2,3, Wade Johnson, Onur K. Arseven and J. Larry Jameson

Division of Endocrinology, Metabolism, and Molecular Medicine, Northwestern University Medical School, Chicago, Illinois 60611

Address all correspondence and requests for reprints to: J. Larry Jameson, M.D., Ph.D., Division of Endocrinology, Metabolism, and Molecular Medicine, Northwestern University Medical School, Tarry 15–709, 303 East Chicago Avenue, Chicago, Illinois 60611. E-mail: ljameson{at}nwu.edu


    Abstract
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
The thyroid hormone receptor splice variant, {alpha}2, is unable to bind thyroid hormone (T3) and has been proposed to function as an endogenous inhibitor of T3 action. In this report, we examined further the DNA sequence requirements for {alpha}2 binding to thyroid hormone response elements (TREs) in an attempt to identify response elements that mediate potent inhibition by {alpha}2. Heterodimers of {alpha}2 and retinoid X receptor were found to bind to a subset of TREs (DR4, direct repeats spaced by 4 bp) in which selected flanking and spacer sequences enhanced interactions with the AGGTCA core binding sequence. Despite the optimization of the TRE-binding sites, {alpha}2 remained a weak dominant negative inhibitor of TRE-driven transcription. A promoter interference assay was also developed for testing inhibition by {alpha}2. In these studies, {alpha}2 blocked gene transcription, but it required cotransfected retinoid X receptor, and it was not as potent as unliganded thyroid hormone receptors. These results led to the hypothesis that {alpha}2 might be deficient in interactions with nuclear receptor corepressors. Consistent with this view, {alpha}2 did not silence basal transcription in its native form or when linked to Gal4. {alpha}2 also failed to interact with corepressors (NCoR and SMRT) in both gel shift assays and mammalian two-hybrid assays. We conclude that {alpha}2 is a weak antagonist of thyroid hormone action because it binds weakly to a limited repertoire of response elements, and it does not interact with corepressors. Thus, {alpha}2 may be able to compete with thyroid hormone receptors for binding to a limited group of target sites, but it is not able to actively inhibit transcription.


    Introduction
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
THYROID hormone receptors (TR), members of the large family of nuclear receptors, regulate the transcription of specific target genes involved in development, differentiation, and metabolism (1). Two different genes, {alpha} and ß, encode the TRs, which are expressed as several isoforms due to alternative splicing (2). TRs exhibit a modular structure with functionally separable domains. The DNA-binding domain (DBD) and the ligand-binding domain (LBD) of the TRs are highly conserved. The LBD is involved in homo- and heterodimerization (3) and in transcriptional activation or repression through interactions of the TR with coactivators or corepressors (CoRs) (4, 5, 6).

TRs bind to thyroid hormone response elements (TREs) in the promoter regions of target genes, thereby conferring ligand-dependent transcriptional regulation. TRs bind to TREs as monomers, homodimers, or heterodimers with accessory proteins, in particular the retinoid X receptors (RXRs) (3). The minimal target sequence defining the TRE half-site consists of the hexameric sequence, AGGTCA (7), or the optimized octameric element (T/C)(A/G)AGGTCA (8). This core recognition motif can be present as a single half-site, as two half-sites arranged as a direct repeat spaced by 4 bp (DR4), as a palindrome (PAL), or as an inverted palindrome (LAP) (1).

The splice variant of the {alpha} gene, referred to as {alpha}2, is identical to TR{alpha}1 for the first 370 amino acids, but the carboxyl-terminal 40 amino acids are replaced by an entirely distinct sequence of 122 residues. This results in an inability of {alpha}2 to bind hormone and to function as a T3-dependent transcription factor (9, 10, 11). {alpha}2 is missing the carboxyl-terminal part of the so-called ninth hydrophobic heptad, and its ability to form heterodimers and to bind to DNA is therefore profoundly altered (12, 13, 14). In gel-shift experiments, {alpha}2-RXR heterodimers bind to a subset of DR4 TREs, but not to PAL or LAP TREs (15).

The physiological role of {alpha}2 remains to be elucidated. It is highly expressed in several tissues, including brain, kidney, and testis (16). As the metabolic effects of T3 are relatively modest in these tissues, it has been proposed that {alpha}2 could play a role as an endogenous antagonist. However, in transient expression assays, the inhibitory activity of {alpha}2 is relatively weak, at least when compared with the dominant negative activity of mutant TRs that occur in patients with resistance to thyroid hormone (RTH) (11, 17, 18). The relatively weak nature of {alpha}2 inhibitory activity is only partially explained by its decreased binding to TREs (19).

It has been shown recently that the dominant negative activity of RTH mutants requires interactions with CoRs (20, 21). We report here that the weak dominant negative activity of {alpha}2 may be caused in part by its lack of interaction with CoRs.


    Materials and Methods
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
T3 response elements
The five synthetic and five naturally occurring DR4 TREs, PAL TREs, and LAP TREs used in this study are listed in Table 1Go. In all synthetic TREs, the core half-site consists of the consensus hexamer AGGTCA (3) or the expanded octamer TAAGGTCA (8).


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Table 1. Summary of DNA-binding properties of receptors

 
Plasmid constructions
The mutant human (h) TRß1 complementary DNAs were prepared by oligonucleotide-directed mutagenesis and were verified by DNA sequencing, as described previously (22). Mutant and wild-type receptor complementary DNAs for the different TR isoforms and hRXR{alpha} were subcloned into pGEM7 (Promega, Madison, WI) for in vitro transcription and translation and into a Rous sarcoma virus vector for transient expression in transfected cells (23). The Gal4 constructs for the different TR isoforms and hRXR{alpha} contain the LBD of the receptor downstream of the Gal4 DBD in-frame in pSG424 (24). The pCMX-NCoR construct was provided by M. G. Rosenfeld (University of California, San Diego, CA) (5), and pCMX-SMRT was a gift from R. M. Evans (Salk Institute, San Diego, CA) (4). The pCMX-NCoR-ID (ID, interaction domain; internal ATG at amino acid 1579) expression vector was created by deleting the NotI-BstXI fragment from pCMX-NCoR. VP16-NCoR-ID and VP16-SMRT-ID contain the TR interaction domain of NCoR (residues 1552–2453) and that of SMRT (residues 876-1495) downstream of the VP16 activation domain in pAASV (25).

Reporter gene constructs were created by inserting annealed synthetic oligonucleotides upstream of the indicated minimal promoters. The plasmid DR4-SV40-Luc contains four copies of a direct repeat TRE (5'-agcttcAGGTCActtcAGGTCActcga-3') upstream of the simian virus 40 (SV40) promoter in the pGL3 luciferase vector (Promega, Madison, WI). PAL-TK-Luc contains two copies of a palindromic TRE (5'-gatctcAGGTCATGACCTgagatc-3') upstream of a thymidine kinase promoter (TK109) in the pA3 luciferase vector (26). The Gal4 reporter plasmid, UAS-TK-Luc, contains two copies of the Gal4 recognition sequence (UAS) upstream of TK109 in pA3-Luc. For the promoter interference assays, a glucocorticoid response element was inserted upstream of TK109. Various TR-binding sites (a DR4 TRE binding {alpha}2/RXR heterodimers and a DR4 unable to bind the heterodimer, as well as an everted and inverted palindromic TRE) were inserted between the TATA box of the promoter and the transcription initiation site (27, 28).

DNA binding studies
Gel mobility shift assays were performed to assess DNA binding and dimerization properties in vitro. TR isoforms, RXR{alpha}, and NCoR-ID were transcribed and translated using the TNT-coupled reticulolysate system (Promega). Lysates expressing TR (2.5 µl), in the presence or absence of RXR{alpha} (2.5 µl), or NCoR-ID (3 µl) were preincubated at room temperature in a 25-µl reaction with a binding buffer consisting of 20 mM HEPES (pH 7.8), 50 mM KCl, 1 mM EDTA, 10% glycerol, 1 mM dithiothreitol (DTT), and 50 µg/ml poly(dI-dC) for 10 min. 32P-Labeled TREs were added, and the mixture was incubated for an additional 20 min. The protein-DNA complexes were analyzed by electrophoresis through a 5% polyacrylamide gel containing 2.5% glycerol in 0.5 x TBE (45 mM Tris-borate and 1 mM EDTA).

Whole cell lysates from TSA-201 cells transfected with 1 µg TR expression plasmids were prepared by three cycles of freeze-thaw lysis in 20 mM Tris-HCl (pH 7.5), 0.5 M KCl, 2 mM DTT, 20% glycerol, and 1 mM phenylmethylsulfonylfluoride. Cell extracts were prepared by centrifugation at 10,000 x g for 30 min at 4 C, and supernatants were stored at -20 C. Cell extracts (10 µg) were incubated with 32P-labeled DR4-A TRE oligonucleotides in 24 µl of a modified binding buffer [20 mM HEPES (pH 7.8), 100 mM KCl, 1 mM EDTA, 20% glycerol, 1 mM DTT, and 100 µg/ml poly dI-dC] at 4 C.

For dissociation kinetics of TR-RXR complexes, a 100-fold excess of cold TRE oligonucleotide was added at various time points before initiating electrophoresis (26).

Transient expression assays
TSA-201 cells, a clone of human embryonic kidney 293 cells (29), were grown in DMEM containing 10% FBS, penicillin (100 U/ml), and streptomycin (100 µg/ml) and transfected by the calcium phosphate method as previously described (26). The total amount of expression plasmid DNA was kept constant in the different experimental groups by adding corresponding amounts of the same plasmids without receptor. After exposure to the calcium phosphate-DNA precipitate for 8 h, Opti-MEM (Life Technologies, Grand Island, NY) with 4% Dowex resin-stripped FBS was added, with or without 10 nM T3. Cells were harvested after 40 h for measurement of luciferase activity (30).


    Results
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
Binding characteristics of DR4 TREs
The DNA-binding activity and dimerization properties of TRß1, TR{alpha}1, and {alpha}2 were studied in the absence and presence of RXR using gel mobility shift assays. Seven synthetic and five naturally occurring TREs were studied in an effort to identify TREs that bind {alpha}2 relatively well. An example of TRE (DR4-A) that binds {alpha}2/RXR heterodimers is shown in Fig. 1AGo. This TRE binds TRß1 and TR{alpha}1 as homodimers, and in the presence of RXR, the majority of the TR exists as a TR/RXR heterodimer. {alpha}2 binds to DR4-A as a heterodimer with RXR, but no {alpha}2 homodimer is seen, suggesting that interactions with RXR are required to form stable {alpha}2 complexes. An example of a TRE (DR4-E) that does not bind {alpha}2 is shown in Fig. 1BGo. In contrast to DR4-A, {alpha}2 does not bind to DR4-E even in the presence of RXR. Although the DR4-E binds TRß1 and TR{alpha}1 well as heterodimers, it binds these receptors poorly as homodimers.



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Figure 1. Interaction of TR isoforms with {alpha}2-binding and {alpha}2-nonbinding response elements. The DNA-binding activity of in vitro translated TR isoforms was analyzed with or without RXR{alpha}. The DNA-binding sites are 32P-labeled {alpha}2-binding DR4-A (A) and {alpha}2-nonbinding DR4-E (B) TREs. The positions of TR monomer, TR-TR homodimer, and the TR/RXR heterodimer are indicated. URL, Unprogrammed reticulocyte lysate. C, Dissociation of receptors from DR4-A. A 100-fold excess of cold oligonucleotide (DR4-A) was added to previously bound TR/RXR heterodimers, and the reactions were subjected to gel electrophoresis for different lengths of time. -1, Before the addition of cold TRE; 0, loading on gel immediately after the addition of cold TRE; 30, 60, and 90 min, after the addition of cold TRE, respectively.

 
Analyses of the entire group of TREs revealed that the DR4 TREs can be classified into two major groups based on the binding characteristics for TRs with or without RXR. Five of the studied DR4 TREs (upper group in Table 1Go) were able to bind {alpha}2/RXR heterodimers, but five other DR4 TREs were unable to bind this complex under the conditions of the gel shift assay (middle group in Table 1Go). Certain features are shared among the TRE sequences that are permissive for binding {alpha}2/RXR heterodimers. For example, the DR4 sequences that bind {alpha}2/RXR also bind TRß1 and TR{alpha}1 homodimers (with the exception of the Moloney leukemia virus TRE). In contrast, the DR4 TREs that are not able to bind {alpha}2/RXR heterodimers, bind TRß1/RXR and TR{alpha}1/RXR as heterodimers, but do not exhibit monomer or homodimer binding. Thus, there is a correlation between the ability to bind receptors as homodimers and the ability to bind {alpha}2/RXR heterodimers.

The hexameric core motif, AGGTCA, has been preserved in each of the artificially configured TREs. Consistent with the proposed optimal half-site for TR{alpha}1, which is formed by the octameric sequence (T/C)(A/G)AGGTCA (8), a thymidine is present 2 bp 5' of the hexameric AGGTCA motif in both half-sites in all but one of the {alpha}2 permissive TREs in the upper group of Table 1Go. A single TRE (DR4-B in Table 1Go) contains a thymidine at this position in the 5' half-site, but a cytosine in the downstream half-site. The first nucleotide upstream of the hexameric half-site was occupied by either a cytosine or an adenosine. In each of the TREs that bind the {alpha}2/RXR heterodimers, guanosines are absent in the spacer regions between the half-sites, whereas the nonbinding DR4s each contain guanosines within the spacer. With the exception of the one synthetic element in the nonbinding DR4s (DR4-E, Fig. 1BGo), the hexameric half-sites deviate from the idealized sequence, AGGTCA. Moreover, a TA or TC motif upstream of the half-sites is absent in each of them, with the exception of the rat GH TRE (31). Taken together, these experiments reveal that {alpha}2/RXR binds a limited number of idealized TREs, and that these elements generally correspond to sequences that also bind TR monomers and homodimers.

Dissociation kinetics of TR/RXR complexes from a DR4 TRE
Although {alpha}2/RXR complexes readily bind to idealized elements such as DR4-A, it is possible to analyze the stability of these complexes by determining dissociation rates. After binding complexes have formed, the addition of a large excess of unlabeled TRE allows the rates of dissociation to be estimated, as any unbound receptor will most likely rebind to unlabeled DNA (26). Under these conditions, TRß1/RXR and TR{alpha}1/RXR heterodimer complexes are relatively stable (Fig. 1CGo). Even after 90 min, little receptor has dissociated. In contrast, the {alpha}2/RXR heterodimers dissociate rapidly, showing greater than 50% dissociation by 30 min. These experiments indicate that although abundant {alpha}2/RXR complex is seen in the standard gel-shift assay, the {alpha}2/RXR heterodimers are relatively unstable compared with the TRß1/RXR and TR{alpha}1/RXR heterodimers.

Dominant negative inhibition by {alpha}2/RXR heterodimers
The variable ability of {alpha}2/RXR heterodimers to bind different TREs led to the hypothesis that the degree of {alpha}2 inhibition might differ using binding and nonbinding TREs (15). The functional effects of {alpha}2/RXR heterodimers were assessed using reporter genes containing an {alpha}2-binding TRE (DR4-A) or an {alpha}2-nonbinding TRE (PAL). Using DR4-SV40-Luc, a 10-fold excess of {alpha}2 weakly inhibited TRß1-regulated (13-fold decreased to 11-fold) or TR{alpha}1-regulated (13-fold decreased to 8-fold) expression (Fig. 2AGo). By comparison, a dominant negative mutant of TRß1 (P453X), which contains a nine-amino acid deletion at the carboxyl-terminus (22), strongly inhibited both TRß1-regulated (13-fold decreased to 4-fold) and TR{alpha}1-regulated (13-fold decreased to 2-fold) expression. Unexpectedly, the inhibitory effect of {alpha}2 was nearly identical to that of the nonbinding TRE reporter gene, PAL-TK-Luc (Fig. 2BGo). These results indicate that while {alpha}2 is a weak inhibitor of TR-mediated expression, its effects correlate poorly with its ability to bind TREs in vitro.



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Figure 2. The dominant negative activity of {alpha}2 and TRß1 receptor mutants. {alpha}2 or mutant TRß (P453X) expression plasmids (50 ng) were cotransfected with 5 ng wild-type TR{alpha}1 or TRß1 in the presence of RXR{alpha} into TSA-201 cells together with 0.5 ng of the reporter gene DR4-SV40-Luc (A) or with 100 ng PAL-TK-Luc (B). Cells were incubated in the absence or presence of 10 nM T3. Results are the mean ±SD of triplicate transfections.

 
Gel mobility shift assays were used to confirm the expression of {alpha}2 and other TR isoforms in transfected TSA-201 cells (26). The DR4-A TRE was used as a labeled probe because it binds well to each of the TR isoforms. As shown in Fig. 3Go, comparable amounts of TR{alpha}1, TRß1, {alpha}2, and the P453X mutant were detected in the transfected cells. The complexes migrated in parallel with in vitro translated TR/RXR heterodimers, and no receptor bands were seen in mock-transfected cells. These results suggest that the weak dominant negative activity of {alpha}2 is not caused by low levels of expression in transfected cells.



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Figure 3. Expression of TR isoforms in transfected TSA-201 cells. DNA binding of transfected TR isoforms or ß1 mutant receptor P453X was analyzed using 32P-labeled DR4-A TRE in gel mobility shift assays. The labeled DR4 probe was incubated with whole cell lysates from transiently transfected TSA-201 cells as indicated. RXR+TR{alpha}1 (RL) denotes in vitro translated RXR+TR{alpha}1 and the positions of the monomer, homodimer, and heterodimer complexes are indicated by arrows.

 
Promoter interference assay
The observation that {alpha}2 inhibited reporter genes independent of its ability to bind {alpha}2/RXR led us to use an independent assay for {alpha}2 interactions with DNA in vivo. In the promoter interference assay, various TREs were inserted adjacent to the site of transcriptional initiation, resulting in transcriptional inhibition when receptors bound to these elements (27, 28) (Fig. 4Go). The results using the DR4-A TRE (which binds {alpha}2-RXR well) inserted into the promoter are shown in Fig. 4AGo. The construct was stimulated by the glucocorticoid receptor in the presence of 100 nM dexamethasone, reflecting the presence of the upstream glucocorticoid response element. Expression of TRß1 or TR{alpha}1 markedly repressed activity, even in the absence of RXR. In contrast, little repression was seen with {alpha}2 alone. Consistent with its requirement for RXR to bind DR4-A, coexpression of {alpha}2 and RXR caused a greater degree of inhibition, but still less than that observed with TRß1 or TR{alpha}1. DBD mutants of TRß1 do not inhibit this construct (28), and none of the receptors caused inhibition of a control promoter without a TRE (data not shown). In Fig. 4BGo, the results are shown using a promoter containing a DR4 TRE (DR4-E) that is unable to bind {alpha}2/RXR heterodimers when examined in gel-shift assays. The results are similar to those using the permissive TRE (DR4-A). Although little inhibition was seen with {alpha}2 alone, addition of RXR induced partial suppression, but less than that seen with TRß1 and TR{alpha}1. Similarly, {alpha}2 and RXR caused partial suppression of TRE-Pal (Fig. 4CGo). Although it is possible that the effects of {alpha}2 and RXR are independent, these results suggest that they may form heterodimers that are able to weakly bind some TRE elements in vivo, even when binding is not detected in gel-shift assays.



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Figure 4. Promoter interference assay. The principle of the promoter interference assay is depicted at the top. A glucocorticoid response element (GRE) is inserted upstream of a thymidine kinase minimal promoter. The TRE to be studied is inserted between the TATA box and the luciferase gene. Binding of TR with or without RXR blocks transcription of the construct, which is stimulated by cotransfection of the glucocorticoid receptor in the presence of 100 nM dexamethasone. Promoter interference using the DR4-A TRE (A), which binds {alpha}2/RXR heterodimers in gel-shift experiments; the DR4-E TRE (B), which does not bind {alpha}2/RXR heterodimers in gel-shift experiments; and TRE-Pal (C), which does not bind {alpha}2/RXR heterodimers in gel-shift experiments is shown. Results are the mean ± SD of triplicate transfections.

 
Absence of silencing by {alpha}2 and Gal4-{alpha}2
Recently, we have shown that the dominant negative activity of RTH mutants requires interactions with NCoRs (21). It seemed possible, therefore, that the relatively weak inhibitory properties of {alpha}2 might reflect diminished or absent binding of NCoRs. Because NCoRs are required for basal repression by unliganded receptors, the silencing activities of TR isoforms were examined using two different types of reporter genes [DR4(A)-SV40-Luc and PAL-TK-Luc]. When TR{alpha}1 or TRß1 isoforms were transfected into TSA-201 cells together with the positively regulated genes, pronounced silencing was observed in the unliganded state (without T3) for both types of reporter genes (Fig. 5Go, A and B). In contrast, minimal silencing was observed with {alpha}2. Cotransfection of RXR{alpha} had little effect on the degree of repression. Silencing was also examined using Gal4-TR constructs (24). Gal4-TR{alpha}1 and Gal4-TRß strongly silenced expression (90% and 75% repression, respectively) from UAS-TK-Luc compared with the Gal4-DBD alone (Fig. 5CGo). As with the native receptors, the silencing activity of Gal4-{alpha}2 was greatly reduced relative to those of the Gal4-TR{alpha}1 and Gal4-TRß constructs.



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Figure 5. Silencing activity by {alpha}2 and Gal4-{alpha}2. A and B, Silencing of positively regulated DR4-SV40-Luc and PAL-TK-Luc reporter genes. Various TR-isoform expression plasmids (10 ng) were transfected with or without RXR{alpha} into TSA-201 cells together with 0.5 ng of the reporter gene DR4-SV40-Luc (A) or 100 ng PAL-TK-Luc (B). C, Gal4 expression plasmids (10 ng) were cotransfected into TSA-201 cells together with 100 ng of the Gal4-responsive reporter gene, UAS-TK-Luc. Cells were incubated in the absence of T3. Results are the mean ± SD from triplicate transfections.

 
Decreased {alpha}2 interactions with NCoR and SMRT
The interaction of CoRs with TR isoforms was examined using gel mobility shift assays and an interaction assay that is a variation of the two-hybrid assay performed in mammalian cells. For the gel mobility shift assays, the carboxyl-terminal half of the NCoR protein, which contains two nuclear receptor interaction domains (32), was used to supershift TR complexes bound to a DR4-A response element (33). As shown in Fig. 6Go, incubation of in vitro translated NCoR-ID with TR{alpha}1 (lanes 3) or TRß (lanes 5) generated a slower migrating band corresponding to a complex between NCoR-ID and TR. A control using NCoR-ID in the absence of TR showed no binding to the DR4 element (lane 1). As noted previously (21), T3 dissociated the TR homodimer complex and prevented formation of the TR complex with NCoR-ID (data not shown). In contrast to the TRs, no interaction was seen between NCoR-ID and {alpha}2 (lane 7).



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Figure 6. Interaction of CoRs with TR isoforms in gel mobility shift assays. NCoR-ID binding to in vitro translated TR isoforms was analyzed with in vitro translated RXR{alpha}. The DNA-binding site is 32P-labeled DR4-A TRE. The positions of TR monomer, TR-TR homodimer, the TR heterodimer with RXR, and the complexes supershifted by NCoR-ID are indicated. URL, Unprogrammed reticulocyte lysate.

 
Interactions between TR isoforms with CoRs were also examined using a mammalian two-hybrid assay. The LBD of TR isoforms was fused to the DBD of the yeast transcription factor, Gal4. The carboxyl-terminal half of NCoR or SMRT protein, which contains the two TR interaction domains, was fused to the transcriptional activation domain of VP16. The reporter gene, UAS-TK-Luc, contains two Gal4-binding sites and was used to assess in vivo interactions between Gal4-TR and VP16-NCoR-ID (Fig. 7AGo) or VP16-SMRT-ID (Fig. 7BGo) in TSA-201 cells. Relative to the Gal4 DBD alone, Gal4-TR{alpha}1 and Gal4-TRß were stimulated 60- and 10-fold by the addition of VP16-NCoR-ID and VP16-SMRT-ID, respectively. In contrast, little or no stimulation by these VP16-CoR constructs was seen using Gal4-{alpha}2 or Gal4-RXR.



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Figure 7. Interaction of CoRs with TR isoforms in mammalian two-hybrid assays. Gal4 expression plasmids (10 ng) were cotransfected into TSA-201 cells with VP16-NCoR-ID (A), VP16-SMRT (B), or a VP16 empty vector (100 ng) together with 100 ng of the Gal4-responsive reporter gene, UAS-TK-Luc. Cells were incubated in the absence of T3. Results are the mean ± SD from triplicate transfections.

 

    Discussion
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
In this report, we provide several lines of evidence that {alpha}2 is a weak antagonist because it fails to interact with CoRs. {alpha}2 has impaired ability to interact with CoRs, as revealed by gel-shift assays and mammalian two-hybrid interaction assays. Moreover, it is unable to effectively silence basal transcription in its native form or when linked to Gal4. The inhibitory activity of {alpha}2 was relatively weak compared with that of a dominant negative mutant of TRß1. Finally, even after the optimization of {alpha}2-binding sites using gel-shift assays, {alpha}2 was shown to dissociate from TREs more readily than TRß1 or TR{alpha}1. Promoter interference assays also revealed that {alpha}2 does not bind as well as unliganded TRs. Thus, we propose that {alpha}2 is a relatively weak antagonist of TR-mediated action because it binds weakly, even to optimized TREs, and because it fails to interact with CoRs, which might otherwise strongly silence genes that bind {alpha}2.

{alpha}2 is widely expressed, but its levels are particularly high in brain, kidney, and testis (16). Because these tissues exhibit relatively low metabolic responses to T3 (1), {alpha}2 has been proposed as a potential endogenous inhibitor of TR action (9). Several studies have suggested that the inhibitory effect of {alpha}2 is caused by competition with TRs for binding to TREs (2, 15, 19, 34, 35, 36). Other results have provided evidence for DNA-independent mechanisms for {alpha}2 inhibition (11, 19, 37, 38). Although {alpha}2 was initially considered unable to bind to TREs (11, 39), we have shown that it can bind as a heterodimer on certain direct repeat TREs (15). Recently, this observation has been confirmed and extended by others (19, 36), and it has been proposed that the binding of {alpha}2/RXR heterodimer requires an optimized downstream octameric half-site.

This study further examines the sequence determinants that enable the binding of {alpha}2/RXR heterodimers to DR4 TREs and its role as an endogenous inhibitor. All synthetic TREs found to bind {alpha}2/RXR heterodimers contain half-site sequences that are almost identical with the optimal octameric sequence reported for TR{alpha}1 (8). Of note, and in contrast to the TRE, that are unable to bind {alpha}2/RXR heterodimers in gel-shift experiments, most of these TREs also bound TRß1 as homodimer, and TR{alpha}1 as monomer and homodimer. It is likely that the correlation of homodimer and {alpha}2/RXR heterodimer binding reflects optimization of flanking and spacing sequences that surround the hexameric TRE half-site. Binding of TR{alpha}1 to a single octameric half-site has been reported previously and has been shown to confer T3 responsiveness to a heterologous promoter in transient transfections (8). As shown previously by Reginato et al. (36), we also found that {alpha}2 and RXR interactions are relatively weak in mammalian two-hybrid assays (data not shown). The loss of strong {alpha}2/RXR heterodimerization has been attributed to the location of the {alpha}2 splice site (19, 36), which disrupts the so-called ninth heptad repeat, a region known to be involved in receptor dimerization (15, 40, 41). Thus, the DNA sequence of the TRE may play a particularly important role in the stabilization of the {alpha}2/RXR heterodimer. The finding that guanosines in the spacer region between the half-sites abolished the formation of {alpha}2/RXR indicates that in addition to providing an optimized downstream half-site, the composition of the spacer region is also of importance for stabilizing the {alpha}2/RXR heterodimer. Despite the optimization of {alpha}2/RXR binding, studies of dissociation kinetics reveal that the {alpha}2/RXR complex is relatively unstable compared with TRß1/RXR and TR{alpha}1/RXR heterodimers.

The silencing function of TR and RAR has been shown to be mediated by CoRs (4, 5). These proteins interact with the unliganded form of the receptors and bind near the hinge region between the DBD and the carboxyl-terminal LBD. In earlier studies, it was noted that the TR contains a transferable silencing domain in its carboxyl-terminus (42), and that RTH mutants retain this silencing function in a constitutive manner that is not reversed by T3 (43). This finding raised the possibility that in addition to competition with wild-type TR for TRE-binding sites (26), RTH mutants might actively repress target genes. Subsequent studies confirmed basal silencing of positively regulated promoters by RTH mutants (44). The identification of CoRs and their interaction domains within the TR (4, 5, 45) has allowed their role in RTH to be assessed more directly. It was demonstrated that insertion of TR mutations that disrupt interactions with CoR greatly reduced the dominant negative activity of the RTH mutants (20, 21). Busch et al. (46) identified at least three subdomains of v-erbA that are involved in its silencing function. In the TRß1, mutations of K420E and K424E in the ninth heptad also affected silencing. Although the interaction surface of TRs with CoRs is not well characterized, the present study suggests that the ninth heptad region that is disrupted in {alpha}2 is also critical for CoR interaction and for silencing.

The absence of CoR interactions with {alpha}2 partially explains its weak inhibitory activity. Competitive DNA binding remains, however, a mechanism for the residual inhibitory effect of {alpha}2. The ability of the {alpha}2/RXR heterodimer to inhibit transcription by binding to DNA is supported by the experiments using the promoter interference approach. Although promoter interference by {alpha}2 is relatively weak, it was enhanced by coexpression of RXR. Binding of the transcriptionally inactive {alpha}2 may account in part for its weak dominant negative activity. However, it should be noted that a DBD mutant of {alpha}2 only partially eliminates the dominant negative effect of {alpha}2 on various TREs (15, 37, 38). These findings are consistent with inhibitory effects of {alpha}2 that occur independent of DNA binding (11, 19, 37, 38). It is unlikely that the inhibition by {alpha}2 is mediated by squelching coactivators such as steroid receptor coactivator-1 (47), transcription intermediary factor-2 (48), or CREB-binding protein/p300 (6), as {alpha}2 itself does not mediate trans-activation and lacks the carboxyl-terminal activating function-2 domain. Alternatively, the TR has been reported to interact with transcription factor IIB through its amino-terminus, and this domain is intact in {alpha}2 (49).

A model for {alpha}2 action is presented in Fig. 8Go. As described above, the CoR interacts with the wild-type TRs, such as {alpha}1 and ß, and induces transcriptional silencing of the target gene in the absence of T3. In contrast to RTH mutants, which bind CoRs and induce potent silencing, {alpha}2 does not interact with CoRs and binds to DNA weakly. At high levels, {alpha}2/RXR heterodimers might compete with wild-type TRs for access to a subset of target genes and/or for binding to general transcription factors. In view of this and other studies, the mechanism of {alpha}2 action is becoming clearer. Ultimately, selective {alpha}2 gene knockouts or overexpression in transgenic mice may be required to clarify its physiological role.



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Figure 8. Model depicting the roles of CoRs in the dominant negative activity of TR. The prevailing model for TR effects on positively regulated genes is shown in A. In the absence of T3, CoRs bind to TR and mediate silencing. In the presence of T3, CoRs dissociate, and co-activators (CoA) bind to TR, resulting in relief of silencing and transcriptional activation. In the case of the thyroid hormone resistance mutant, which does not bind to T3, a suppressive complex is formed with CoR and competes for wild-type receptor binding to DNA to block transcriptional activation (B). In the case of the TR variant {alpha}2, a nonsuppressive complex is formed without CoR. Competition may occur for wild-type receptor binding to DNA or interaction with general transcription factors, but suppressive activity is reduced because of weak binding to DNA and the absence of interactions with CoRs (C). GTFs, General transcription factors.

 


    Acknowledgments
 
We are grateful to M. G. Rosenfeld and R. M. Evans for providing plasmids.


    Footnotes
 
1 This work was supported by NIH Grant DK-42144 (to J.L.J.). Back

2 T.T. and P.K. contributed equally to this work. Back

3 Recipient of a fellowship grant from the Swiss National Foundation of Science. Back

Received November 5, 1997.


    References
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 

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