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Endocrinology Vol. 140, No. 7 3012-3024
Copyright © 1999 by The Endocrine Society


ARTICLES

Regulation and Expression of Gonadotropin-Releasing Hormone Gene Differs in Brain and Gonads in Rainbow Trout1

Kristian R. Von Schalburg and Nancy M. Sherwood

Department of Biology, University of Victoria, Victoria, British Columbia, Canada V8W 3N5

Address all correspondence and requests for reprints to: Dr. Nancy Sherwood, Department of Biology, University of Victoria, Victoria, British Columbia, Canada V8W 3N5. E-mail: nsherwoo{at}uvic.ca


    Abstract
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
The GnRH gene is transcribed in both the brain and gonads. GnRH in the brain is critical for reproduction, but the function and importance of GnRH in the ovary and testis is not clear. In this study we examine whether regulation of the GnRH gene is distinct in the brain and gonads, whether the regulation of the GnRH gene in the gonads is altered after genome duplication, and whether the regulatory region of the GnRH gene is tightly conserved in vertebrates. From ovary and testis, we isolated and sequenced for the first time two different genes and their complementary DNAs that encode the identical peptide known as salmon GnRH. Rainbow trout were selected because they are tetraploid due to genome duplication.

A downstream promoter is used in the brain and gonads by salmon GnRH messenger RNA1 (mRNA1) and mRNA2, but mRNA2 also uses an upstream promoter only in the gonads. Two types of long mRNA2 transcripts in ovary and testis both use an alternative start site at position -323; one of these types also retains intron 1. This long 5'-untranslated region is a likely site for distinct regulation of mRNA in the gonad. Additional evidence for separate regulation is that a different expression pattern exists in brain and gonads for GnRH mRNAs during development and maturation. Gene duplication did not alter the encoded peptide, but changed the expression pattern and resulted in complete divergence of the promoter sequence from position -215. A comparison of the mammalian and trout GnRH genes reveals that the promoters are without sequence identity except for a few consensus sites in both regulatory regions. The duplicated trout genes provide a model to study a critical gene whose product controls reproduction in all vertebrates.


    Introduction
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
GnRH IS THE key regulatory molecule involved in the control of reproduction in vertebrates. The central role of this decapeptide is to modulate the synthesis and release of the gonadotropins from the pituitary. However, differences in the ontogeny and location of different types of GnRH found within the brains of single species indicate that GnRH has roles in addition to that of a hypophysiotropic factor (1).

Recent studies show that GnRH is not made exclusively in neurons. The isolation and localization of GnRH and its receptor in various reproductive tissues support an extrapituitary autocrine/paracrine role for GnRH in reproduction. For example, mammalian GnRH (mGnRH) complementary DNA (cDNA) has been isolated or detected in the primate ovary and testis (2, 3) as well as placenta (3, 4). In situ hybridization studies in females localize mGnRH and its receptor primarily in granulosa cells (5, 6). In males, GnRH is present in Sertoli cells, and its receptor is found in Leydig cells (7).

GnRH is first expressed in the developing mouse brain at approximately 10 days after fertilization (8) and in the salmonid brain at 17 days after fertilization (9, 10). GnRH is then continuously expressed in the brain throughout the life of the animal (11, 12). For the ovary, the pattern of expression of GnRH is reported for the rat; GnRH is first observed at 18.5 days postcoitum, and the GnRH receptor mRNA is detected at 15.5 days postcoitum (13). Both receptor and GnRH mRNA are expressed in primary, secondary, and tertiary follicles in the ovary (5, 6). In the testis, the mRNA for both GnRH and its receptor are detected at 14.5 days postcoitum (13).

Data are not available currently on the transcription factors involved in activation of the GnRH gene in the gonads. However, one area of regulatory control at the posttranscriptional level could be the extended 5'-untranslated region present in the GnRH mRNA isolated from these tissues. An upstream promoter is used in GnRH mRNAs transcribed in the ovary and testis of human (2) and monkey (3), but not rodents (3).

Although GnRH has been demonstrated in vitro to have inhibitory and stimulatory influences on the developing and maturing ovary (14) and testis (15), the precise role of GnRH in the gonads is still not clear. To determine whether the processes governing GnRH regulation and expression are conserved in vertebrates, we have taken an evolutionary approach by studying GnRH in rainbow trout. Rainbow trout are an unusual example of the salmonid group because they mature early at 3 yr of age, spawn every year for a number of years, and spend their lives exclusively in fresh water. However, like other salmonids, rainbow trout are tetraploid (16); this means that comparison and analysis of the 5'-flanking regions of the two genes that encode salmon GnRH (sGnRH; gene1 and gene2) can be used to understand the changes that have occurred since duplication in the coding and regulatory regions of the two genes. In addition, this study investigates whether different splicing strategies are used by the two genes in the ovary and testis compared with those in the brain.


    Materials and Methods
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
Raising of rainbow trout
Eggs from rainbow trout were obtained in December from Frazer Valley Trout Hatchery (Abbottsford, Canada). The eggs were fertilized by gently mixing the eggs and milt by hand. The eggs were then washed with partial exchanges of water. Approximately 200 fertilized eggs were placed in each nest, which is an open container made from a polyvinylchloride tube of 12 cm diameter and 10 cm in height with a piece of fine mesh glued on the bottom. The nests were placed in Heath trays (Marisource, Puyallup, WA) at the University of Victoria. The eggs and prehatch larvae were raised in fresh water at a temperature of 14 C and a flow rate of 720 liters/h. At hatching, which occurred 22 days after fertilization, the alevin were transferred from the Heath trays to 30-liter holding tanks. The fry were raised for 7 months and then transferred to 500-liter rearing tanks for the remainder of the study. The holding and rearing tanks were exposed to natural light conditions throughout the study. In addition, rainbow trout (1.5 yr and older) were obtained from Mountain Trout Sales (Sooke, Canada).

Isolation of RNA from ovary and testis
Between 5 months and 2 yr of age, fish were quickly killed by decapitation. Ovarian or testicular tissue was removed, placed on dry ice, and stored at -80 C. Total RNA was extracted in Trizol as recommended by the manufacturer (BRL, Bethesda, MD).

cDNA synthesis and RT-PCR
First strand cDNA was synthesized from 2–5 µg total RNA from tissue extracts using Superscript RT ribonuclease (RNase) H- reverse transcriptase by methods recommended by the manufacturer (Life Technologies, Inc., Gaithersburg, MD). The RT reaction product (0.5–1.0 µl) was diluted to a final 50-µl volume containing 1 x Promega Corp. buffer (50.0 mM KCl, 10.0 mM Tris-HCl, 1.5 mM MgCl2, and 0.1% Triton X-100), 200 mM dNTPs, 2.5 U Taq DNA polymerase (Promega Corp., Madison, WI), and 30 pmol sense or antisense strand primers. Amplification of cDNA was achieved with 40 cycles of 1 min at 94 C, 1 min at 50 C, and 1 min at 72 C using the sense strand primers A (5'-GAAGCTTATGCACTAAGCAGG-3'), B (5'-TAGGAAGGAATACACAGAACGG-3'), F (5'-AGGACATTTCTAAGTGACC-3'), and G (5'-CTACACTGTATTTCTGATC-3') in combinations with antisense strand primers C (5'-TTATTTATGGGGCATCCATTTC-3') and D (5'-CCAGGTAGCCAGCCATACGA-3'; as shown in Fig. 1AGo). The design of these primers was based on the sockeye salmon sGnRH gene2 that we sequenced earlier (17).



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Figure 1. Analysis of cDNAs and the upstream transcription start site of the trout sGnRH genes. A, Schematic presents the position of primers (arrows) used in RT-PCR of sGnRH cDNA1 or cDNA2. Each filled box represents one of four exons that comprise brain-type GnRH mRNA. B, Summary of different sGnRH cDNA2 transcripts found in the salmonid ovary and testis. The transcript with the longest 5'-untranslated region is shown by the thick line and black box (exon 1) to represent sGnRH mRNA2 transcribed from the upstream start site with unspliced intron 1. The shorter transcript found in the rainbow trout testis contained 27 nt of the 3'-end of intron 1. In rainbow trout ovary, the shorter transcript generated from the upstream start site did not contain intron 1. Also, primer extension analysis indicates that some transcripts in the reproductive tissue are generated from the same start site as that used in the brain.

 
The sense strand primers A, F, and G are respectively located in positions -149 to -129, -248 to -230 and -318 to -300 upstream from the transcription start site used for brain GnRH. Sense strand primer B corresponds to positions 10–29 of exon 1. Antisense strand primers were located as follows: C (exon 4, positions 1019–1040), D (exon 2, against the sequence that encodes GnRH), and E (exon 1, antisense to bases 16–34).

The synthesis and amplification of sGnRH cDNA1 were achieved using RNA derived from 1.5-yr-old rainbow trout ovary by the methods described above (accession no. AF110992). The sense strand primer S (5'-AGGAATAGACCGAACGGAC-3') was complementary to exon 1 (positions 12–30) in the rainbow trout sGnRH gene1 described below (Fig. 1AGo). The antisense strand primer T (5'-TTGAATGCTCCATCATCGC-3') was designed against a consensus region for the 3'-UTR of both sockeye salmon (18) and masou salmon (19) sGnRH cDNA1. The 3'-UTR region was used, as it is distinct from its counterpart in the sGnRH gene2. Sense strand primer J (5'-GGAGAAGGGATTCTAATCC-3') is complementary to a region located in position -82 to -64 in the sGnRH gene1. The integrity of the cDNA for each examined tissue was confirmed by separate PCRs using primers that were specific for a salmon tubulin cDNA clone (bases 523–545 and 719–740) (20).

The PCR products were separated on a 1.5% agarose gel containing ethidium bromide and were retrieved by electroelution in dialysis tubing. The retrieved DNA was subcloned into pGEM-T vector (Promega Corp.), and recombinant plasmids were sequenced on both strands by the chain termination method (Sanger) using Sequenase version 2 kit (U.S. Biochemical Corp., Cleveland, OH) or Circumvent Thermal Cycle sequencing kit (New England Biolabs, Inc., Beverly, MA).

Primer extension
Rainbow trout ovaries, testes and brains were excised and quickly frozen. Total RNA was isolated as discussed above. An oligonucleotide, primer E (5'-TCTCCGTTCTGTGTATTCC-3'), was used in each RT reaction for each tissue (Fig. 1AGo). The primer (500 ng) was 5'-end labeled with [{gamma}-32P]ATP (DuPont NEN, Boston, MA) by T4 polynucleotide kinase and purified to a specific activity of 3 x 108 cpm/µg. A mixture of 3.0 ng labeled primer and 20 µg ovarian, testicular, or brain total RNA from rainbow trout was combined with 1 x first strand buffer and heated to 90 C for 5 min. After primer hybridization at 50 C for 4.5 h in the presence of 50 U RNAguard RNase inhibitor (Pharmacia, Dorval, Canada), the annealed primer was extended upon addition of 10 mM dithiothreitol, 0.5 mM of each deoxy-NTP, and 4 U Superscript II reverse transcriptase (BRL) when incubated at 45 C for 2 h. The reaction was stopped by the addition of 1.0 µl 0.5 M EDTA (pH 8.0) and 1.0 µl deoxyribonuclease (DNase)-free RNase (10 mg/ml). The mixture was extracted once with phenol/chloroform and precipitated with 2.5 mM ammonium acetate and 2.5 vol ethanol. The purified extended products were dissolved in 4 µl Tris-EDTA buffer (pH 8.0) and 4 µl sequencing buffer, then electrophoresed on a 6% polyacrylamide-8 M urea gel in parallel with sequencing products generated from extension of primer E from a complementary site within a subclone containing a 2833-bp fragment of sGnRH gene2 (17). The gel was dried and exposed to Kodak Biomax film (Eastman Kodak Co., Rochester, NY) at -80 C for 24 h.

Characterization of the promoter regions for the trout sGnRH gene1 and gene2
Genomic DNA isolated from rainbow trout ovary was amplified by PCR using a sense strand primer complementary to a 5'-flanking region of the sockeye salmon sGnRH gene2 (position -583 to -565; 5'-GCACTCAAGCATCTTGTTCC-3') and primer D. Gel fractionation yielded two amplification products of 1257 and 920 bp in length. Sequence analysis revealed that the largest fragment represented the promoter for the rainbow trout sGnRH gene1 (accession no. AF110533), and the shorter fragment represented a portion of the promoter for the rainbow trout sGnRH gene2 (accession no. AF110993).


    Results
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
We isolated and characterized two different cDNAs that encode sGnRH; both transcripts are present in the ovary and testis of rainbow trout. In addition, we characterized the genes for each cDNA. The cDNAs encode an identical GnRH hormone [deduced amino acids (aa)], but differ in signal peptide, associated peptide, promoter, alternative splice sites, and expression during development. Whereas cDNA1 is synthesized only from a downstream promoter, sGnRH gene2 generates differentially spliced cDNA2 transcripts from both an upstream and a downstream start site (see below).

Comparison of coding regions of cDNA1 and cDNA2
Amplification of sGnRH cDNA1 was achieved using primers designed specifically to the 5'-untranslated region (UTR) and 3'-UTR to differentiate the sGnRH cDNA1 from its sGnRH cDNA2 counterpart in both gonads (Figs. 1Go and 2Go). It can be deduced that the two transcripts are each translated into preproprotein, which includes the signal peptide, GnRH, and GnRH-associated peptide (exons 2–4). The preproprotein translated from the sGnRH mRNA2 differs by 15 aa in comparison to the sGnRH mRNA1 (Fig. 2Go). Although two nucleotide (nt) changes occur in the region that encodes GnRH (aa codons 2 and 6), the processed hormone is identical when translated from each template. Thus, the 15-aa changes are restricted to the signal peptides (6-aa changes) and the GnRH-associated peptide (9-aa changes).



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Figure 2. The nt and aa sequences of the translated portion of the two cDNAs encoding sGnRH isolated from rainbow trout ovary and testis (from exon 2 to the stop codon of exon 4). Changes in nt or aa are shown in bold for the sGnRH cDNA2 transcript in comparison to the sGnRH cDNA1. The portion of the preproprotein that is processed to become the mature hormone is boxed.

 
Characterization and sequence analysis of extended cDNA2 for trout sGnRH
To determine whether the salmonid GnRH mRNA2 in the reproductive tissue was transcribed from an alternative start site, we designed primers A and F that are complementary to a region upstream from the start site in the brain for rainbow trout (Fig. 1AGo). In PCR analysis of first strand cDNA made from ovarian or testicular total RNA using primers A/C, we observed PCR products that were 629, 467, and 440 bp in length (Fig. 3AGo) after gel fractionation. PCRs with primers F/D resulted in products of 567, 405, and 378 bp in length (Fig. 3BGo). Subsequent cloning and sequencing of the A/C-amplified PCR products revealed that each amplification product contained sequences upstream from exon 1 and that the larger transcripts retained intron 1 (but not intron 2 or 3; Fig. 1BGo and Fig. 3Go, A and B). Primers B/C were used to identify the brain transcripts (Fig. 3CGo). That the use of the upstream start site is specific for the ovary and testis is shown in Fig. 3Go, A and B, by the lack of observable bands for the brain with the A/C and F/D primer sets, but the amplification of a PCR product in Fig. 3CGo with primer set B/C at 286 bp.



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Figure 3. RT-PCR analysis of RNA extracted from 2-yr-old rainbow trout ovary, testis, and brain. A, Examination of GnRH expression and use of the upstream promoter in rainbow trout ovary (O), testis (T), and brain (B) with primer set A/C. B, Proof that both transcripts can be amplified in the rainbow trout ovary is demonstrated using primer set F/D. C, Primer set B/C was used for brain.

 
The RT-PCR results presented here represent mRNA and not genomic contamination or RNA intermediates for several reasons. First, none of the amplification products isolated and sequenced contained intron 2 or 3. Second, the shorter testis GnRH transcript (467 bp) contained a unique intron-exon splice site that is 27 nt upstream from the site more commonly used at the beginning of exon 2 (Fig. 1BGo). Third, the smaller 440-bp product from the ovary (Fig. 3AGo) was isolated, cloned, and sequenced to confirm that introns 1–3 were not retained and that the start site originated upstream from that shown for the brain. Modifying the PCR parameters failed to yield the larger intron 1-containing transcript observed for the rainbow trout testis (Fig. 3AGo). However, using the sense primer F in conjunction with antisense primer D in PCRs of the same gonadal cDNA, we found amplification of two bands; one (567 bp) retained intron 1, but the other (378 bp) did not (Fig. 3BGo). These results were obtained even after DNase I treatment of total RNA derived from rainbow trout ovary or testis before the RT-PCRs were initiated. However, it should be noted that the ovary did not consistently provide both products, but, rather, the larger or smaller fragment alone, when primers F/D were used for PCR.

Definitive determination of the start site in the rainbow trout ovary and testis by primer extension analysis (see below) permitted the design of primer G. PCRs performed with primers G/D produced bands of the expected sizes that were cloned and sequenced to confirm that each transcript was generated from the upstream start site (Figs. 1BGo and 4Go). The full-length sGnRH cDNA2 and the alternative splicing are detailed in Fig. 4Go. PCR products were not produced with a sense primer (I) complementary to a region upstream of the alternative start site (data not shown).



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Figure 4. The nt sequence of the full-length sGnRH cDNA2 transcript isolated from rainbow trout ovary and testis. For completeness, the four most upstream sequences also shown correspond to information deduced from primer extension analysis. The transcription start site for the cDNA begins 323 nt upstream from the start site used in the brain. The TATA box and putative CAAT boxes used by the transcription apparatus to stimulate GnRH expression in the brain are underlined. Note also that this transcript includes all of intron 1, which is spliced out of the smaller sGnRH cDNA2 expressed in rainbow trout ovary (shown in bold). In rainbow trout testis, the smaller message contains 27 nt of the 3'-end of intron 1 due to processing at an alternative acceptor, as shown by the bold underlined ag and 27 overhead asterisks. Positions are given for nt on the left and aa on the right. Arrows indicate the positions of introns 2 and 3, respectively.

 
Identification of the transcription start site for gene2 in ovary and testis
The transcription initiation site of sGnRH gene2 in rainbow trout ovaries and testes was determined by primer extension analysis. GnRH transcripts in the salmonid ovaries and testes were synthesized from the same start site that was used in the brain as well as from two additional tissue-specific start sites further upstream (Fig. 5CGo). The largest extension was confirmed by PCR and represents a transcript that contains 323 nt of 5'-UTR upstream from the start site found in the brain transcript (Fig. 5AGo). It is not clear whether the primer extension product that migrated to position -81 indicates a site of termination of an extended sGnRH cDNA2 because we did not isolate a cDNA of the appropriate size (Fig. 5BGo).



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Figure 5. Determination of the upstream transcription start site used by sGnRH cDNA2 transcripts in trout ovary and testis. RNA extracted from rainbow trout ovary (O), testis (T), or brain (B) was hybridized with a labeled primer made antisense to exon 1 and extended with reverse transcriptase. sGnRH gene2 messages in the salmonid ovary and testis are initiated from the same start site that is used in the brain as well as two additional tissue-specific start sites further upstream. A, The largest extension represents a transcript that contains 323 nt of 5'-UTR upstream. B, A second transcript begins at -81 nt. C, The transcript found in the brain begins at +1. The bracket indicates the antisense sequence that comprises the TATAAAA box.

 
Determination of upstream start site for gene1 in ovary and testis
The sGnRH gene1 did not use an upstream promoter in reproductive tissues to produce sGnRH mRNA1. Both sense strand primers A and J as well as antisense strand primer T are complementary to regions in the sGnRH gene1 (Fig. 1AGo). Sense strand primer J is complementary to a region in the promoter of both gene1 and gene2 immediately downstream from the potential site of termination at -81 (Fig. 5BGo). Amplification products were not generated using A/T or J/T primer sets in separate RT-PCRs of gonadal tissues of different developmental stages (data not shown). Furthermore, although the possibility exists that primer E could bind sGnRH cDNA1 (84% homology), the start site observed in Fig. 5CGo is specific for rainbow trout sGnRH cDNA2 and not sGnRH cDNA1, which would be expected to terminate 3 nt further downstream (see below).

Organization and sequence of the promoter region for trout sGnRH gene1 and gene2
The 5'-flanking region of the rainbow trout sGnRH gene1 is shown in Fig. 6Go. The transcriptional start site for this gene was deduced from the start site for sockeye (18) and masou (19) salmon sGnRH cDNA1. The 5'-flanking region of the rainbow trout sGnRH gene2 is shown in Fig. 7Go. The promoter of the trout sGnRH gene1 is highly conserved in the 215-bp proximal to the transcription start site compared with the sGnRH gene2 found in Atlantic salmon (21), sockeye salmon (17), and rainbow trout (Fig. 8Go). However, the 400 bp of DNA beyond -215 (-589 to -215) in the rainbow trout sGnRH gene1 diverge completely from similar positions in the three other salmonid sGnRH gene2 promoters that are known (Fig. 8Go). Thereafter, about 100 bp of flanking region in the rainbow trout sGnRH gene1 (-708 to -589) has high sequence identity to the sGnRH gene2 in rainbow trout (-557 to -432), sockeye salmon (-550 to -425), and Atlantic salmon (-1689 to -1565). This region of identity is found about 60 bp upstream from a site in the sockeye salmon gene that appears to have lost 1152 bp of DNA in comparison with the Atlantic salmon gene (17).



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Figure 6. The nt sequence of the 5'-flanking region of the rainbow trout sGnRH gene1. CAAT boxes and the TATAAAA box are bold and underlined. The sequence encoding GnRH is in bold. The underlined region between positions -457 and -294 contains four repeating blocks of DNA (each block begins with a C*). Each repeating block of DNA contains a putative estrogen receptor-binding TGTCC half-site (double underlined). Positions are given for nt on the left and aa on the right.

 


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Figure 7. The nt sequence of the 5'-flanking region of the rainbow trout sGnRH gene2. The upstream start site is indicated by a bold a with an asterisk above. Two palindromic EREs that flank the upstream start site are shown in bold. Sequences situated close to the upstream start site that resemble a nonpalindromic ERE are underlined and designated *ERE* were shown by Radovick et al. (22 ) to bind human ER. The position of potential Inr and DPE motifs are indicated above the respective sequences. CAAT boxes and the TATAAAA box are underlined. The sequence encoding GnRH is in bold. Positions are given for nt on the left and amino acids on the right. The sites of primer binding are -591 to -572 and 309 to 328.

 


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Figure 8. A schematic comparing the 5'-flanking regions of the known salmonid sGnRH-encoding genes. The thick lines represent regions of DNA that are highly conserved for each gene. The asterisks above the sGnRH gene1 represent the four blocks of DNA that are exact repeats of one another. The bent arrow denoted +1 indicates the brain transcription start site from exon 1. No similarity exists between -589 to -215 in the sGnRH gene1 compared with that in the sGnRH genes2. In the rainbow trout gene2, flanking region -591 to -1 matches the same region in the sockeye salmon gene2, but both species lack the extra flanking region shown in Atlantic salmon (-1367 to -362). A large block of 1152 bp present in Atlantic salmon gene2 is not present in the sockeye salmon or rainbow trout sGnRH gene2. P1 and P2 indicate downstream and upstream promoter regions, respectively. In exon 2, positions 225, 233, and 241 indicate translational start sites for each of the GnRH preproproteins.

 
Some common transcription regulation elements are found in similar contextual positions of the mammalian and salmonid GnRH promoters (Fig. 9Go). The upstream regions of both the sGnRH and mGnRH genes appear to have consensus sequences that share the potential to bind POU homeodomain regulators (Oct-1 and Brn-2). Also of interest is the position of both AP-1 and estrogen regulatory elements in close proximity to the alternative upstream start site in both the mammalian (primate) (22) and salmonid (sGnRH gene2) promoters. Finally, the strong conservation of the salmonid GnRH promoters in the proximal 200 bp might indicate that an element critical to GnRH regulation, similar to the Sox recognition motif, is shared among these genes.



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Figure 9. A schematic comparing positions of potential recognition motifs in the 5'-flanking regions of mammalian and salmonid GnRH-encoding genes. The bent arrows denoted +1 indicate the brain transcription start site from exon 1 based on evidence from primer extension analysis. The thick lines represent regions of DNA that are highly conserved for each salmonid gene. Palindromic sites are shown by ERE. Sequences closely matching nonpalindromic EREs, which were shown by Radovick et al. (22 ) to bind human ER, are indicated by *ERE*. Putative ERE half-sites are shown for sGnRH gene1 by asterisks. P1 indicates the position of the downstream promoter region, and P2 represents the upstream promoter. The labeling of consensus sequences in rainbow trout is speculative, as binding data are not yet available. For the mammalian GnRH gene, binding has been shown for estrogen receptor (22 ), Oct-1 (45 ), and Brn-type (46 ) and Sox-2 (47 ) transcription factors.

 
The alternative upstream promoter of both the sockeye salmon (23) and rainbow trout sGnRH gene2 lack TATA or CAAT boxes, but each contains sequences that resemble initiator (Inr) and downstream promoter element (DPE) motifs required to facilitate binding of the basal transcriptional apparatus in the promoters of other genes that lack a TATA box (24, 25) (Fig. 7Go). The Inr CAA+1TGT at -325 to -320 resembles the consensus sequences of Py-Py-A+1-N-T/A-Py-Py or T-C-A+1-G/T-T-T/C for mammalian (26) or Drosophila (24) genes. Three candidate DPEs that are homologous to the consensus A/GGA/TCGTG established for the Drosophila DPE are found in positions -280 to -274 (GGACAAA), -248 to -242 (GGACATT), and -216 to -210 (GGTAGTG) (25).

In the rainbow trout gene2 between the upstream and downstream start sites are two nonpalindromic estrogen response elements (EREs) and one palindromic ERE. This is similar to the sockeye salmon and Atlantic salmon proximal promoter regions. Also, the upstream start site is centered between two palindromic EREs that are within 100 bp on each side (Fig. 7Go). These two palindromic EREs have 100% identity to EREs shown to bind human estrogen receptor in the Atlantic salmon GnRH gene (27), although they lie in a downstream section of DNA in the opposite orientation in the region examined here (17). Furthermore, sequences in position -318 to -306 closely resemble a putative ERE found near to the start site for GnRH expression in human and monkey reproductive tissues (2, 3). The position of the start site in relation to these EREs in all three salmonids could point to the involvement of estrogen receptor in the responsiveness of the upstream promoter in gene2.

Developmental expression of sGnRH cDNA2 in the ovary and testis
Our original intention was to determine whether alternative promoters are used in the ovary and testis during early development. In studying the expression pattern, we observed an unusual pattern of expression during development in the gonads compared with the brain. Expression of sGnRH cDNA2 was examined extensively. However, cDNA1 expression was also detected in tissue during embryogenesis and at adult stages (data not shown).

At 5–8 months after fertilization (May to August) the gonads were immature, yet they expressed GnRH mRNA (Fig. 10AGo). Once the gonads were further differentiated in the first year, expression of GnRH was limited to a short period: September and October in the ovary and only October in the testis. This coincided with the time of year in which they would eventually mature and spawn in their third year and thereafter. GnRH was not expressed in rainbow trout ovary and testis from November of the first year through May of the second year (Fig. 10Go, A and B). Expression of GnRH mRNA was not detected in juvenile tissue at any stage in the second year except in December (Fig. 10BGo).



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Figure 10. GnRH expression in ovary and testis of rainbow trout in the first and second years of their lives. A, RT-PCR of RNA from immature gonads of fish that were 5 months (May) to 8 months (August) of age. Only in September (ovary) or October (testis) of the first year did differentiated organs express GnRH. B, RT-PCR of juvenile ovary and testis with GnRH expression only in December. C, RT-PCR of gonads from fish that matured precociously in year 2 beginning in June. Maturing ovary expressed GnRH from June to October, except for ripe ovary examined in August. Large testes taken from precocious males expressed GnRH in June, July, and August, but not in October. D, Life history of rainbow trout, showing development from egg to death. Larvae from fall-spawning rainbow trout hatch approximately 3 months after fertilization. The alevin live on their yolk sac until roughly 3 months of age, when they begin to feed as fry. The fry may undergo smoltification by 1 yr of age and become reproductively competent adult fish by 3 yr of age. In the second year, about 20% of the population may have well developed reproductive tissue. These fish will reproduce normally 1 yr before their agemates. In the present experiment, the eggs were fertilized in December, and hatching occurred in January.

 
In the second year of life, beginning in June, about 10–20% of the fish showed precocious sexual development in which there was advanced ovarian ("jills") and testicular ("jacks") maturation. The expression of GnRH mRNA was tested separately in these fish (Fig. 10CGo). GnRH was expressed in each precocious tissue examined in June through October except in ripe ovaries (August) and in jack testes (October; Fig. 10CGo). The testes examined from June through October were very large compared with their immature counterparts. The ovaries examined were considered to be jills because they had well defined features, indicating that they were maturing (visible and orange-colored eggs, larger gonad size).

The immature gonadal tissue did not use the upstream promoter in June (year 1), but did use it in August to generate GnRH mRNA2 (data not shown; Fig. 10AGo). Both May and July gonadal tissue were examined for expression of GnRH mRNA only with primer set B/C, which detects use of the downstream promoter. The upstream promoter was used in all juvenile fish in September to October (year 1) and again in December (year 2; Fig. 10Go, A and B, and Fig. 11Go). The same was true for the precocious fish examined in year 2 (Fig. 10CGo and Fig. 11Go).



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Figure 11. Examination of GnRH expression and use of the upstream promoter in 2-yr-old rainbow trout ovary (O), testis (T), and brain (B) with primer sets A/C and B/C. sGnRH mRNA2 is expressed in precocious ovary and testis from June to October of the second year. All results from rainbow trout testis for June to August are from RT-PCR analysis of RNA extracted from large testes taken from jack males. In October, larger testes from jack males no longer expressed sGnRH cDNA2. GnRH expression in juvenile rainbow trout ovary and testis was only observed in December, as shown here. No amplification products were observed for the brain with primer set A/C, but amplification of a PCR product was detected using primer set B/C at 286 bp.

 

    Discussion
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
Our data show that ovary and testis use an alternative upstream promoter and retain intron 1 to generate GnRH mRNAs bearing 5'-UTRs longer than their brain counterparts in rainbow trout. We found that the ovarian and testicular transcripts have two 5'-UTRs that differ in length from the brain 5'-UTRs. In salmonids, such as rainbow trout, which have two genes encoding identical GnRH peptides, the organization of the 5'-flanking regions is distinct beyond the 215 bp proximal to the start site. During development, GnRH mRNA is expressed even in immature gonads during the first year and then in both the ovary and testis in an intermittent pattern during the juvenile stage. This is unlike that in the brain, where GnRH is continuously expressed from before hatching through adult life.

Extended GnRH transcripts in gonads during maturation
In developing gonads, upstream promoters were used in late stages of immature gonads and throughout the juvenile and precocious stages. In the ovary and testis, the same promoter that is used in the brain is used, as well as the more upstream alternative promoter, for transcription of the sGnRH mRNA2 transcripts. This generates at least three sGnRH mRNA2s; two transcribed from the upstream promoter (with or without intron 1) and at least one from the more downstream promoter. Testes transcripts also have a variation due to an extra 27 nt from the alternative splice site between intron 1 and exon 2. A similar requirement for long 5'-UTRs has been demonstrated for mGnRH mRNA in the reproductive tissue of monkey (3) and human (2). Although the rat ovary has been shown to express GnRH, neither rat nor mouse appears to use upstream promoters for transcription of GnRH in reproductive tissues (2, 3). Also, a comparison of transcript sizes from Northern analysis indicates that the GnRH mRNA expressed in the gonads of goldfish (28) and midshipman (29) are not generated from upstream promoters. It therefore appears that the mechanism for control of GnRH expression in the ovary and testis of rodents as well as in goldfish and midshipman differs from that in primates and salmonids.

Function and origin of extended GnRH transcripts in gonads
It has been demonstrated in the mammalian brain that various neurotransmitters and modulators regulate GnRH levels by modulating mRNA stability (30). Perhaps the extended 5'-UTRs of sGnRH or mGnRH transcripts found in the salmonid and mammalian gonads are required by nonneuronal tissue to similarly modulate GnRH levels. Specific sequences contained within a variety of mRNAs have been demonstrated to influence the half-life of the mRNA (for a review, see Ref. 31). The extended 5'-UTRs characterized here may contain regulatory sequences that are recognized by stabilization or destabilization factors associated with RNases in the ovary and testis. Alternatively, the 5'-UTR may inhibit or enhance GnRH translation (through facilitatory binding proteins) at important periods during development and maturation. These functional questions need to be addressed to understand the processes that govern GnRH in the gonad.

To our knowledge, only mGnRH and sGnRH transcripts bearing these unusually long 5'-UTRs have been isolated from reproductive tissue. The finding that both mGnRH and sGnRH genes use two different promoters and generate alternative transcripts provides further support for the hypothesis that the gene encoding sGnRH arose from the ancient mammalian GnRH gene in bony fish (1). We have shown previously that mGnRH of identical structure is present in humans and an ancient bony fish, the sturgeon (32, 33). The salmon form of GnRH (sGnRH) arose as mGnRH disappeared in fish that evolved later than the sturgeon.

Start site and intron splicing in extended gonadal transcripts
A series of potential AUG translational start sites is present in the extended 5'-UTRs and in intron 1. However, these potential start sites resemble neither the functional translational start sites (CTC/TCCAUGG) nor the Kozak consensus sequence rule (CCA/GCCAUGG) (34). Furthermore, when read in-frame, the potential start sequences are always followed by termination codons. It is doubtful that translation begins at any other site in the extended transcripts except the same site that is used in the brain.

In human placental or breast tumor cell lines, the major promoter for mGnRH was shown to be the more upstream one (2). The sequences permitting tissue-specific retention of intron 1 may be present in the 5'-end of intron 1, where the fourth nt of the salmonid or the fifth nt of the human (4) GnRH gene is changed from the intron consensus 5'-GTAAGT-3' donor site. These changes may provide some flexibility or recognition by the spliceosome for intron retention or splicing. In rainbow trout testis, the mechanism for selection of the more upstream AG acceptor site (27 nt upstream from the acceptor used in the brain) is clear because both acceptor sites for intron splicing closely match the splice site consensus sequences found in vertebrates [(T/C)11NCAG] (35). Use of this alternative splice site in the 3'-end of intron 1 was also observed in preliminary studies on 1.5-yr-old sockeye salmon (23), and therefore may occur more frequently in salmonids than reported here.

Promoter changes in duplicated GnRH genes encoding identical peptides
Recent evidence that zebrafish and possibly many ray-finned fish are tetraploid has been suggested as an explanation for the considerable diversity seen in fish (36). It is argued that the duplicated genes may be expressed in different regions and at different times in development, making them important indicators of new functions in vertebrates. The rainbow trout genes reported here are an excellent example of the changes in structure, regulation, and expression that can occur in two gene copies after a tetraploidization event that occurred over 27 million yr ago (37).

The promoters of the two genes characterized here have 94% sequence identity within the region proximal to the start site. Whatever alterations have occurred to the promoters after duplication of the ancestral sGnRH gene at the transition from a diploid to tetraploid fish, the proximal 215 bp have been conserved. This core promoter region is presumably important for binding of the basic transcription factors near the start site.

Remarkably, there are no large regions of similar sequences beyond the 215 nt at the start site that are shared between the salmonid GnRH promoters and any of the known mammalian GnRH promoters. However, small consensus sequences that resemble binding motifs for mammalian transcription regulators are present in the sGnRH gene2 of sockeye salmon (17) and rainbow trout. Also, the upstream A/T-rich block of DNA that is conserved among the salmonid sGnRH-encoding genes does possess recognition sequences that may be important for GnRH regulation in both the brain and the gonads. For example, consensus elements are present in each promoter that potentially could bind members of the POU homeodomain family of transcription regulators that are involved in morphogenesis and neurogenesis (38). Each promoter in this conserved region contains two elements that strongly resemble recognition sequences for mammalian Brn-2 (CATnTAAT) and at least one centrally positioned element that could be engaged by Oct-type factors (ATGCAAAT) (39). Importantly, members of this family of regulators have been isolated in both the mammalian brain and gonad (38).

The block of repeating DNA between position -457 to -294 in the sGnRH gene1 contains no apparent consensus sites for factors that direct GnRH transcription in mammals. However, this GC-rich region does contain four repeating blocks of DNA (each 41 bp in length) that each hold a potential ERE half-site. The Atlantic salmon sGnRH gene2 promoter contains six EREs, three that are palindromic and three that are nonpalindromic (17, 27). These TGTCC half-sites were shown to bind human estrogen receptor only if they were part of a complete palindromic element in footprinting assays and gel retardation experiments with the Atlantic salmon sGnRH gene2 (27). However, unlike the sGnRH gene2, complete palindromic EREs are not present in the sGnRH gene1 promoter, indicating that if estrogen is involved in activation of sGnRH gene1 expression in the gonads, it may not be through estrogen receptor binding to the half-site.

Also, the more proximal portions of the rainbow trout and sockeye salmon promoters are highly homologous to the Atlantic salmon sGnRH gene2 promoter (27). This is of some interest considering that the alternative upstream promoter of GnRH in salmonids as well as those in both human (2) and monkey (3) contain nonpalindromic EREs, which were demonstrated by Radovick to stimulate GnRH expression (22).

Regulation of GnRH transcription and function of GnRH in gonads
Little is currently known about the regulation of GnRH transcription in the gonad. We speculate that potential EREs in the salmonid and primate GnRH promoters means that estrogen receptor or other steroid receptors play a role in the transcription of GnRH in the ovary and testis. Future analysis using promoter deletion and electrophoretic mobility shift assays are needed to define the regulatory factors and the specific recognition motifs that they bind.

The intermittent expression of GnRH in juvenile gonads during the first 2 yr of life suggests a different function compared with that in the brain, where GnRH is continuously expressed (10, 11, 12). GnRH is expressed in juvenile gonads only in September and October of the first year and in December of the second year. Longer periods of expression are observed in precocious gonads in the second year. In females, there is a strong indication from several physiological studies that GnRH acts as a meiosis-stimulating factor in the oocytes of rat (40) and fish (goldfish and seabream) (41). In male rats, GnRH inhibits LH-stimulated testosterone secretion both in vitro and in vivo, and GnRH receptors are present on the Leydig cells (15). However, in males, the physiological importance of testicular GnRH, which is found in the Sertoli and spermatogenic cells, is not resolved (15). Another possible function of GnRH is related to its role in T cell proliferation (42), gonadotrope differentiation (43), and tunicate gonadogenesis (44). In this light, the expression of GnRH might be needed for growth and differentiation of a new wave of germ cells required by any vertebrate with repeating reproductive cycles, such as rainbow trout, which spawn once a year. The expression of GnRH in immature gonads suggests that the role of GnRH is considerably broader than presently understood.


    Acknowledgments
 
We thank Jack and Kevin Nickolichuk of Mountain Trout Sales for providing some of the rainbow trout for this study.


    Footnotes
 
1 This work was supported by the Canadian Medical Research Council. Back

Received December 9, 1998.


    References
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
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