Endocrinology Vol. 140, No. 8 3666-3673
Copyright © 1999 by The Endocrine Society
Cloning and Characterization of Type III Iodothyronine Deiodinase from the Fish Oreochromis niloticus1
Jo P. Sanders2,
Serge Van der Geyten2,
Ellen Kaptein,
Veerle M. Darras,
Eduard R. Kühn,
Jack L. Leonard and
Theo J. Visser
Department of Internal Medicine III (J.P.S., S.V.d.G., E.K.,
T.J.V.), Erasmus University Medical School, 3000 DR Rotterdam, The
Netherlands; Laboratory of Comparative Endocrinology (S.V.d.G., V.M.D.,
E.R.K.), K.U. Leuven, 3000 Leuven, Belgium; Department of Nuclear
Medicine (J.L.L.), University of Massachusetts Medical Center,
Worcester, Massachusetts 01655
Address all correspondence and requests for reprints to: Theo J. Visser, Ph.D., Department of Internal Medicine III, Erasmus University Medical School, Room Bd 234, P.O. Box 1738, 3000 DR Rotterdam, The Netherlands. E-mail: visser{at}inw3.azr.nl
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Abstract
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Type III iodothyronine deiodinase (D3) catalyzes the inner ring
deiodination (IRD) of T4 and T3 to the inactive
metabolites rT3 and 3,3'-diiodothyronine (3,3'-T2),
respectively. Here we describe the cloning and characterization of
complementary DNA (cDNA) coding for D3 in fish (Oreochromis
niloticus, tilapia). This cDNA contains 1478 nucleotides and
codes for a protein of 267 amino acids, including a putative
selenocysteine (Sec) residue, encoded by a TGA triplet, at position
131. The deduced amino acid sequence shows 5767% identity with frog,
chicken, and mammalian D3, 3339% identity with frog, fish
(Fundulus heteroclitus) and mammalian D2, and 3035%
identity with fish (tilapia), chicken, and mammalian D1. The 3' UTR
contains a putative Sec insertion sequence (SECIS) element. Recombinant
tilapia D3 (tD3) expressed in COS-1 cells and native tD3 in tilapia
brain microsomes show identical catalytic activities, with a strong
preference for IRD of T3 (Km
20
nM). IRD of [3,5-125I]T3 by
native and recombinant tD3 are equally sensitive to inhibition by
substrate analogs (T3 > T4 >>
rT3) and inhibitors (gold thioglucose >> iodoacetate
> propylthiouracil). Northern analysis using a tD3 riboprobe shows
high expression of a 1.6-kb messenger RNA in gill and brain, although
D3 activity is much higher in brain than in gill. The characterization
of tD3 cDNA provides new information about the structure-activity
relationship of iodothyronine deiodinases and an important tool to
study the regulation of thyroid hormone bioactivity in fish.
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Introduction
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THE MAJOR secretory product of the thyroid
is a prohormone, T4, which is activated in peripheral
tissues by outer ring deiodination (ORD) to T3.
T4 and T3 are converted by inner ring
deiodination (IRD) to the metabolites rT3 and
3,3'-diiodothyronine (3,3'-T2), respectively (1, 2, 3, 4, 5). Three
iodothyronine deiodinases are involved in these processes (1, 2, 3, 4, 5). In
mammals, the type I deiodinase (D1) is located in liver, kidney, and
thyroid. It has both ORD and IRD activities, in particular toward
rT3 and sulfated iodothyronines (1, 2, 3, 4, 5). The type II
deiodinase (D2) only catalyzes ORD with T4 as the preferred
substrate. In rats, D2 is expressed predominantly in brain, pituitary,
and brown adipose tissue, and recent findings suggest additional
expression in human thyroid, skeletal muscle and, perhaps, heart
(1, 2, 3, 4, 5, 6, 7). D3 has only IRD activity with preference for T3 as
the substrate. In mammals, D3 is mainly found in brain, skin, placenta,
and fetal tissues (1, 2, 3, 4, 5). The three deiodinases have recently been
cloned from different species, showing that they are homologous
selenoproteins featuring an essential selenocysteine (Sec) residue in
their catalytic centers (6, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20).
Whereas D3 expression in placenta appears to be independent of thyroid
state (21, 22, 23), D3 activity in rat brain is increased in
hyperthyroidism and decreased in hypothyroidism (24). High D3
activities are expressed in the fetal human liver (25) and the
embryonic chicken liver (26, 27, 28). Acute down-regulation of hepatic D3
gene expression has been observed after administration of GH or
dexamethasone to the chick embryo (29, 30, 31). Although T3 is
essential for normal brain development, high D3 expression levels in
mammalian placenta and fetal tissues, including brain, are thought to
protect the developing fetus against undue levels of maternal thyroid
hormone (32, 33).
The three iodothyronine deiodinases have also been identified in
Oreochromis niloticus (tilapia) and other fish, although
their tissue distributions are very different from those of the
mammalian enzymes (5, 18, 20, 34, 35, 36, 37, 38, 39). In tilapia, D1 activity is much
higher in kidney than in any other tissue. By far the highest D2
activity is expressed in liver. D3 activity is high in brain, low in
gill, and negligible in all other tissues (5, 36, 37). The catalytic
properties of fish D2 and D3 are very similar to those of the mammalian
enzymes (5, 34, 35, 36, 37, 38, 39). However, at least in tilapia and trout, fish D1 is
insensitive to inhibition by 6-propylthiouracil (PTU), in contrast to
the potent inhibition of mammalian (and chicken) D1 by this thyrostatic
drug (5, 36, 37, 38). To investigate the molecular basis for this
difference in PTU sensitivity between fish and mammalian D1, we have
recently cloned and characterized complementary DNA (cDNA) coding for
D1 in tilapia (20). In contrast to our hypothesis, we found that
tilapia D1 contains a Sec residue in a position corresponding to the
Sec residue in PTU-sensitive D1s, indicating that differences in PTU
sensitivity are determined by other structural elements (20).
Simultaneous with the cloning of D1 from tilapia kidney, we also
attempted to clone other deiodinases from tilapia liver. This involved
RT-PCR of tilapia liver messenger RNA (mRNA) using oligonucleotide
primers based on amino acid sequences (NFGSCTSecP, YIEEAH and VVVDTM)
highly conserved in the D1 and D3 sequences available at that
time (8, 9, 10, 11, 12, 13). The RT-PCR products were sequenced and used as probes for
cDNA library screening. This resulted in the isolation of TL31, a cDNA
clone coding for tilapia D3 (tD3).
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Materials and Methods
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Materials
Tilapia (O. niloticus) were obtained from
CERER-University of Liège (Tihange, Belgium) and kept as
described before (36, 37). TRIzol reagent was obtained from Life Technologies, Inc. (Breda, The Netherlands); oligo-dT-cellulose
was from New England Biolabs, Inc. (Beverly, MA); SuperTaq
DNA polymerase was from HT Biotechnology Ltd. (Cambridge,
UK); AMV reverse transcriptase and pCI-Neo were from Promega Corp. (Madison, WI); Klenow DNA polymerase was obtained from
Roche Molecular Biochemicals (Mannheim, Germany); pCR-II
was from Invitrogen (San Diego, CA); synthetic
oligonucleotides were from Amersham Pharmacia Biotech
(Roosendaal, The Netherlands) or Life Technologies, Inc.;
Hybond membranes, [
-32P]dATP and
[
-32P]UTP were purchased from Amersham Pharmacia Biotech (Buckinghamshire, UK); polyethyleneglycol (PEG6000) was
from Merck (Hohenbrunn, Germany); DEAE-dextran and
Sephadex LH-20 were from Amersham Pharmacia Biotech.
Nonradioactive iodothyronines were obtained from Henning Berlin R&D
(Berlin, Germany), [3', 5'-125I]T4 (
1200
Ci/mmol) and [3'-125I]T3 (
2000 Ci/mmol)
from Amersham Pharmacia Biotech, and
[3,5-125I]T3 (
35 Ci/mmol) from Mr. R.
Thoma (Formula GmbH, Berlin, Germany) courtesy of Dr. G. Decker
(Henning, Berlin, Germany). (3', 5'-125I)rT3
(
2000 Ci/mmol) and [3,5-125I]T3S were
prepared in our laboratory as described previously (40, 41).
6-n-Propyl-2-thiouracil (PTU), iodoacetate (IAc), gold
thioglucose (GTG), dithiothreitol (DTT), and chloroquine were obtained
from Sigma Chemical Co. (St. Louis, MO). All other
reagents were of the highest purity commercially available.
Cloning and sequence analysis
Total RNA was isolated from tilapia liver using TRIzol reagent,
and poly(A+) RNA was isolated on oligo-dT-cellulose. cDNA
was obtained by oligo-dT-primed RT using AMV reverse transcriptase. PCR
was performed using the primers 5'-AATTTTGGCAGTTGTACCTGACC-3' and
5'-RTGIGCTTCCTCIATGTA-3' and SuperTaq DNA polymerase. The PCR products
were TA-cloned into pCR-II and sequenced. The tilapia liver cDNA
library was constructed in Lambda ZAP-Express (Stratagene,
La Jolla, CA). The library was blotted on Hybond-N+ and
screened with the RT-PCR products labeled with
[
-32P]dATP by primer extension using Klenow DNA
polymerase. The phagemids carried in selected positive bacteriophages
were excised, generating cDNA clones in pBK-CMV. The inserts were
sequenced manually and by automatic sequencing in both directions using
the dideoxy method (42).
RNA secondary structure prediction was done using the MFOLD program
provided by Dr. M. Zuker (Institute for Biomedical Computing, Washington University, St. Louis, MO) on the internet
(http://www.ibc.wustl.edu/
zuker; Ref. 43). Hydropathicity
analysis of the protein was done according to Kyte and Doolittle (44)
with a window of 11 using the ProtScale program provided on the website
of the Swiss Institute of Bioinformatics (http://expasy.hcuge.ch).
Expression
cDNA was cut out of pBK-CMV with SalI/NotI
and ligated into XhoI/NotI digested pCI-Neo and
expressed in COS-1 cells grown in DMEM/F12 containing 10% FCS
(Life Technologies, Inc.) and 40 nM
Na2SeO3 (45). One day before transient
transfection, COS-1 cells were seeded at 50% confluence in 55
cm2 cell culture dishes. Expression constructs (7 µg)
isolated by alkaline lysis and polyethyleneglycol precipitation (46)
were added to serum-free DMEM/F12 medium containing 100 µg/ml
DEAE-dextran. After 2 h, the medium was replaced by serum-free
DMEM/F12 medium containing 100 µM chloroquine. Again,
2 h later the medium was replaced by DMEM/F12 containing 10% FCS
and 40 nM Na2SO3. After 3 days, the
cells were rinsed with PBS, collected in 0.3 ml 0.1 M
phosphate (pH 6.9), 1 mM EDTA and 10 mM DTT,
sonicated, snap-frozen on dry-ice/ethanol, and stored at -80 C.
Northern blots
Total tissue RNA (20 µg per lane) was separated on 1%
(wt/vol) formylaldehyde-agarose gels and blotted onto
Hybond-N+ membranes by overnight capillary transfer using
20 x SSC. For preparation of a riboprobe, the TL31-pCI-Neo
plasmid was double-digested with EcoRI/XbaI and
religated to remove nonspecifically hybridizing repetitive 3'UTR
sequences. The 3'UTR-deleted construct was linearized with
NheI, and the riboprobe was generated using the
T3 Ampliscribe kit (Epicentre Technologies, Madison, WI)
and [
-32P]UTP. Hybridization of the Northern blot was
performed in NorthernMax buffer (Ambion, Inc., Austin, TX)
overnight at 67 C. Blots were washed once for 30 min at 50 C with
0.1 x SSC, 0.1% SDS, and twice for 30 min at 70 C with 0.1
x SSC, 0.1% SDS. Autoradiographs were prepared by exposure of the
blots at -70 C to Fuji Photo Film Co., Ltd. RX film.
Analysis of the ethidium bromide-stained gels indicating 2030%
variation in the amount of applied RNA.
Enzyme assays
Tilapia tissue homogenates and microsomal fractions were
prepared as described before (37). Deiodinase activities of native and
recombinant enzyme preparations were determined by measuring the
radioiodide released from either [3',
5'-125I]T4 or [3',
5'-125I]rT3 by ORD, or from
[3,5-125I]T3 or
[3,5-125I]T3 sulfate (T3S) by IRD
(40, 41). In short, appropriate amounts of tissue or lysate protein
were incubated in triplicate for 3060 min at 37 C with 10
nM [125I]substrate in 0.2 ml, 0.1
M sodium phosphate buffer (pH 7.2), 2 mM EDTA,
and 10 mM DTT. Reactions were stopped and
[125I]iodothyronines were precipitated by successive
addition of 0.1 ml 5% BSA and 0.5 ml 10% TCA. Radioiodide was further
isolated from the supernatant on Sephadex LH-20 minicolumns (40, 41).
For HPLC analysis of the deiodination products, 1 nM [3',
5'-125I]T4 or
[3'-125I]T3 was incubated in duplicate for
1 h at 37 C with (1 mg protein/ml) or without cell lysate in 0.2
ml, 0.1 M phosphate (pH 7.2), 2 mM EDTA and 50
mM DTT. The reactions were stopped by addition of 0.2 ml
ice-cold methanol. After centrifugation, 0.2 ml of the supernatant was
mixed with 0.2 ml 0.02 M ammonium acetate (pH 4), and 0.1
ml of the mixture was applied to a 250 x 4.6 mm Symmetry C18
column (Waters, Etten-Leur, The Netherlands) connected to an Alliance
HPLC system (Waters) and eluted isocratically with a mixture of
acetonitrile and 0.02 M ammonium acetate (33:67, vol:vol)
at a flow of 1.2 ml/min. Radioactivity in the eluate was monitored on
line using a Radiomatic A-500 flow scintillation detector (Packard,
Meriden, CT).
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Results
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By RT-PCR of tilapia liver mRNA using oligonucleotide primers
corresponding to the conserved amino acid sequences NFGSCTSecP and
VVVDTM, a 246-bp cDNA fragment was obtained, the sequence of which
showed high homology with the corresponding region in Xenopus
laevis and Rana catesbeiana D3 (12, 13). The labeled
PCR product was used as a probe to screen the tilapia liver cDNA
library (200,000 independent clones). Seven double-positive clones were
identified after plating 500,000 pfus of the amplified library. Using
vector- and PCR product-specific primers, several possibly full-length
clones were identified. One cDNA clone (TL31) was found to be 1479 bp
long with a reading frame coding for a 267-amino acid protein, assuming
that TGA at codon 131 is translated as Sec (Fig. 1
). The protein has a calculated
molecular weight of 30,356 kDa and an iso-electric point (pI) of 6.2.
Analysis of the 3'UTR region of TL31 by RNA secondary structure
prediction reveals a stem-loop structure containing consensus SECIS
element nucleotides (Fig. 2
). SECIS
elements are essential for the incorporation of Sec at the in-frame UGA
opal stop codon (47, 48, 49, 50). Evidence presented below indicates that TL31
represents cDNA coding for tD3.

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Figure 1. Nucleotide and deduced amino acid sequence of cDNA
clone TL31. The Sec residue is denoted by X. The putative SECIS element
in the 3' untranslated region is underlined.
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Figure 2. Predicted stem-loop structure of the SECIS element
in the TL31 3'UTR. Consensus nucleotides are indicated in
bold.
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Figure 3
shows the alignment of the
deduced amino acid sequence of tD3 with the D3 sequences of X.
laevis, R. catesbeiana, chicken, human, and rat.
The amino acid identity of tD3 amounts to 6265% with frog D3 (12, 13), 67% with chicken D3 (19), and 57% with mammalian D3 (14, 15).
The amino acid sequence of tD3 shows 35% identity with tilapia D1
(20), 33% identity with chicken D1 (19) and 3033% identity with
mammalian D1 (8, 9, 10, 11). The amino acid identity of tD3 with fish
(F. heteroclitus) D2 is 36% (18), with frog D2 33% (16)
and with mammalian D2 3839% (6, 17).

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Figure 3. Alignment of the cDNA-deduced amino acid sequences
of tilapia (til), X. laevis (xen), R.
catesbeiana (ran), chicken (chi), human (hum) and rat D3. The
Sec residue is denoted by X. Identical amino acids are indicated by
dots, and gaps are indicated by
hyphens.
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Figure 4
shows the hydropathicity plot of
the tD3 protein using the Kyte and Doolittle algorithm (44), indicating
a strongly hydrophobic domain between amino acids 16 and 41 which
probably represents a transmembrane domain.

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Figure 4. Kyte and Doolittle hydropathicity plot of the tD3
amino acid sequence. Positive values indicate hydrophobic regions and
negative values indicate hydrophilic regions.
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Figure 5
shows the analysis of the enzyme
activity expressed in tD3 cDNA-transfected COS-1 cells using different
iodothyronine derivatives as substrates. In agreement with the
well-known catalytic profile of native D3 from tilapia and other
species (1, 2, 3, 4, 5), recombinant tD3 catalyzes the IRD of T3 but
much less so of T3S, whereas it does not catalyze the ORD
of T4 and rT3. The deiodination products of
T4 and T3 were also analyzed by HPLC (Fig. 6
). The results show that recombinant tD3
specifically catalyzes the IRD of T4 to rT3,
whereas ORD of T4 to T3 is undetectable (Fig. 6A
). T3 undergoes only IRD to 3,3'-T2, whereas release of
radioiodide through ORD of [3'-125I]T3 is
undetectable (Fig. 6B
). Similar data were obtained using tilapia brain
homogenate as source of native tD3 (data not shown).

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Figure 5. Catalytic profile of recombinant tD3 expressed in
TL31-transfected COS-1 cells. Cell sonicates (1 mg protein/ml) were
incubated for 1 h at 37 C with 10 nM substrate and 10
mM DTT. Results are the means ± SD of
triplicate incubations in a representative experiment.
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Figure 6. HPLC analysis of the deiodination of
T4 (A) and T3 (B) by tD3. Conditions were: 1
nM (3', 5'-125I)T4 or (3'-125I)T3,
50 mM DTT, 1 mg/ml TL31-transfected cell lysate protein,
and 1 h incubation at 37 C. Representative results of duplicate
incubations with or without enzyme are illustrated with the
continuous and interrupted lines,
respectively.
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Figure 7
demonstrates that recombinant
tD3 expressed in COS-1 cells has exactly the same substrate specificity
and inhibitor sensitivity as the native enzyme in tilapia brain
microsomes. IRD of 10 nM [125I]T3
by both recombinant and native tD3 is inhibited progressively by
increasing concentrations of unlabeled T3, T4,
and rT3, with IC50 values of
10,
100
and >>1000 nM, respectively (Fig. 7
, A and B). The
apparent Km value of T3 for both native and
recombinant tD3 amounts to
20 nM, which is close to the
Km values found for other D3 enzymes (1, 2, 3, 4, 5). Native and
recombinant tD3 also show equal patterns of inhibition by increasing
concentrations of GTG, IAc, and PTU (Fig. 7
, C and D). Under the
conditions used, IC50 values for these inhibitors amount to
1 µM,
1 mM and >>1 mM,
respectively.

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Figure 7. Inhibition of the IRD of
[125I]T3 by native tD3 in tilapia brain
microsomes (A, C) and recombinant tD3 expressed in TL31-transfected
COS-1 cell lysates (B, D) by increasing concentrations of unlabeled
T3, T4 and rT3 (A, B), or PTU, IAc
and GTG (C, D). Conditions were: 10 nM
[125I]T3, 10 mM DTT, 0.10.25 mg
protein/ml, and 1 h incubation at 37 C. Results are the means of
closely agreeing triplicates in a representative experiment.
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Figure 8
compares the tissue
distributions of D3 activity and mRNA levels in tilapia. Analysis of
the IRD of T3 in tissue homogenates indicates high D3
activity in brain and much lower activities in other tissues (Fig. 8A
).
On the Northern blots, a prominent 1.6-kb mRNA species is detected in
gill and brain by hybridization with the tD3 riboprobe (Fig. 8B
).
Gill shows extensive hybridization of progressively shorter mRNA
species, with a prominent band of
1.2 kb which is clearly visible
after shorter exposure times (not shown). Much weaker bands are present
in liver and kidney. Furthermore, smaller mRNA species of
1 kb are
observed in heart and spleen. Gut and muscle show very little tD3
mRNA.

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Figure 8. A, Tissue distribution of D3 activity in tilapia.
Homogenates (1 mg protein/ml) were incubated for 1 h at 37 C with
10 nM [125I]T3 and 50
mM DTT. Results are the means of closely agreeing
triplicates in a representative experiment. B, Northern blot of total
tissue RNA (20 µg) hybridized with radiolabeled tD3 riboprobe.
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Discussion
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Evidence that the TL31 cDNA cloned and characterized in this study
codes for tD3 may be summarized as follows. 1) The nucleotide and
deduced amino acid sequences of TL31 show much higher homologies with
D3 sequences from various species than with D1 and D2 sequences from
fish and other species. 2) The catalytic properties of the enzyme
expressed in TL31-transfected cells are characteristic for D3. It
efficiently catalyzes the IRD of relatively low concentrations of
T4 and T3 but is much less effective in the IRD
of T3S. This is in contrast to D1 from tilapia and other
species, which show much higher IRD rates with T3S than
with T3 as substrate (1, 2, 3, 4, 5, 20). Furthermore, the
TL31-encoded enzyme does not catalyze the ORD of rT3 and
T4, which are the most prominent reactions catalyzed by D1
and D2, respectively (1, 2, 3, 4, 5). 3) IRD of T3 by
TL31-transfected cells and native tD3 expressed in tilapia brain is
characterized by identical Km values and equal
sensitivities to inhibition by the substrate analogs T4 and
rT3 and the deiodinase inhibitors GTG, IAc, and PTU. The
higher concentrations of unlabeled T4 than of
T3 required to inhibit the IRD of labeled T3 by
recombinant and native tD3 are in agreement with the higher apparent
Km values of T4 than of T3 for D3
in general (1, 2, 3, 4, 5).
GTG, IAc, and PTU are potent inhibitors of D1 from different species,
where GTG and IAc are thought to react with the selenolate anion of the
native enzyme and PTU is supposed to react with a selenenyl iodide
enzyme intermediate (1, 2, 3, 4, 5). However, tilapia D1 is much less sensitive
to inhibition by GTG and IAc and is virtually insensitive to PTU (20, 36, 37). D2 and D3 from different species are even less sensitive than
tilapia D1 to the effects of these inhibitors (1, 2, 3, 4, 5). Because Sec is
supposed to be the catalytic center in all deiodinases, the reason for
their differential sensitivities to these inhibitors remains an enigma
(1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20).
The alignment of tD3 with the human, rat, R. catesbeiana,
X. laevis, and chicken D3s reveals regions of high homology.
The Kyte and Doolittle hydropathicity plot strongly suggests that the
highly conserved N-terminal sequence from Ala16 to
Ile41 in tD3 represents a hydrophobic membrane-spanning
domain that anchors the protein in the membrane of the endoplasmic
reticulum or in the plasma membrane. Such a transmembrane domain has
also been identified near the N terminus of other deiodinases (6, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20). Studies of the topography of mammalian D1 suggested that the N
terminus is hidden in the lumen of the endoplasmic reticulum with the
major part of the protein exposed to the cytoplasm (51). Such an
orientation fits with the requirement of thiols as cofactors for the
deiodination of iodothyronines which are abundant in the reductive
environment of the cytoplasm (52). These studies of D1 topography have
also shown that basic amino acids flanking the transmembrane domain,
which are located in positions 11 and 4244 of tD3, are essential for
proper insertion in the membrane (51).
The His residues located at positions 163 and 180 of tD3 are conserved
throughout the iodothyronine deiodinase family and have been shown in
rat D1 to be essential for enzyme activity (53). One of these may
directly participate in the catalytic process by forming a hydrogen
bond with the selenol group, further increasing its nucleophilicity
(53, 54). Phe65 in rat and human D1 (11, 41) has been shown
to be involved in binding of rT3. The absence of Phe in a
corresponding position of D3 may contribute to the low affinity of
rT3 for this enzyme.
Although incorporation of Sec into tD3 has not been demonstrated
directly, our findings strongly suggest that this enzyme features a Sec
residue in a position corresponding to the Sec residue in other
deiodinases. Sec is encoded by the UGA opal stop codon if the
termination of translation normally signalled by this codon is
suppressed in the presence of a SECIS element in the 3'UTR of the mRNA
(47, 48, 49, 50). The stem-loop structure predicted in the 3' UTR of the tD3
cDNA contains most but not all of the consensus nucleotides observed in
other SECIS elements (47, 48, 49, 50). The putative tD3 SECIS element contains
the sequence GUGA (nucleotides 12681271) instead of AUGA in other
SECIS elements (47, 48, 49, 50). The function of this first adenosine is not
clear, since it is not involved in the nonWatson/Crick base-pairing
proposed by Walczak et al. (50). A similar deviation from
the consensus SECIS element was found in the second putative SECIS
element in tilapia D1 cDNA (20). The consequences of this substitution
for the efficiency of Sec incorporation are unknown. However, the tD3
SECIS element appears to function effectively in COS-1 cells not only
in the context of wild-type tD3 cDNA but also in a chimeric construct
combining the coding sequence of human D2 and the 3'UTR of
tD3.3
The TL31 cDNA clone represents most of the tD3 mRNA because the size of
the largest and most prominent band observed on Northern blots is only
slightly bigger than TL31. Smaller mRNA species are observed in heart
and spleen. The significance of these multiple mRNA species is unknown,
but they may represent mRNA processing intermediates. However, the
smaller D3 mRNA species in heart and spleen (
1 kb) are not expected
to translate into functional protein because they are too short to
contain both the initiator codon and the SECIS element. The
high-stringency conditions used in the Northern analysis preclude
hybridization of the tD3 riboprobe with D1 and D2 mRNA. This is
supported by the barely detectable hybridization with RNA from liver
and kidney which show abundant expression of D2 and D1, respectively
(5, 20, 36, 37). Furthermore, hybridization with D1 (20) and D2 (55)
riboprobes shows different hybridization signals.
The translational efficiency of the tD3 mRNA apparently shows
substantial differences between tissues. Brain contains high levels of
both D3 activity (37) and D3 mRNA. Even higher D3 mRNA levels are found
in gill, although this tissue contains only limited D3 activity (37).
The tailing observed with D3 mRNA from gill suggests high mRNA
degradation. It is also remarkable that the Northern blots showed very
little expression of D3 mRNA in tilapia liver, although D3 cDNA
fragments were produced by RT-PCR of liver mRNA, and the tilapia liver
cDNA library contained several independent TL31-like clones.
In conclusion, we have cloned and characterized D3 cDNA from tilapia.
Together with the human, rat, chicken, and frog D3 sequences, the
elucidation of a fish D3 sequence helps to define the conserved regions
of these proteins which are essential for IRD activity.
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Acknowledgments
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We thank Hans van Toor for expert assistance with the HPLC
analyses.
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Footnotes
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1 The nucleotide sequence reported in this paper has been submitted to
the GenBank/EMBL Data Bank with accession number Y11111. This
work was supported by The Netherlands Organization of Scientific
Research (Grant 90340-168), the Belgian FKFO (Project
2.0114.94), the KULeuven Onderzoeksraad (Projects OT/94/11 and
OT/97/22), and the FWO Vlaanderen. 
2 These authors contributed equally to this work. 
3 J. P. Sanders, E. Kaptein, and T. J.
Visser, unpublished results. 
Received October 6, 1998.
 |
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