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Endocrinology Vol. 140, No. 9 4070-4080
Copyright © 1999 by The Endocrine Society


ARTICLES

Discovery and Characterization of Endometrial Epithelial Messenger Ribonucleic Acids Using the Ovine Uterine Gland Knockout Model1

Thomas E. Spencer, Allison G. Stagg, Margaret M. Joyce, Guido Jenster, Christopher G. Wood, Fuller W. Bazer, Anne A. Wiley and Frank F. Bartol

Center for Animal Biotechnology and Genomics, Albert B. Alkek Institute of Biosciences and Technology, Texas A&M University System Health Science Center, and Department of Animal Science, Texas A&M University (T.E.S., A.G.S., M.M.J., F.W.B.), College Station, Texas 77843-2471; the Department of Urology, M.D. Anderson Cancer Center, University of Texas (C.A.W., G.J.), Houston, Texas 77030-4095; and the Department of Animal and Dairy Science, Auburn University (A.A.W., F.F.B.), Auburn, Alabama 36849-5415

Address all correspondence and requests for reprints to: Dr. Thomas E. Spencer, Center for Animal Biotechnology and Genomics, 444 Kleberg Center, Texas A&M University, College Station, Texas 77843-2471. E-mail: tspencer{at}ansc.tamu.edu


    Abstract
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
Prolonged exposure of the developing neonatal ovine uterus to a progestin from birth prevents uterine gland development and creates an adult endometrial phenotype characterized by the absence of glandular epithelium, the uterine gland knockout (UGKO) phenotype. This study used endometrium from normal and UGKO sheep to identify messenger RNAs (mRNAs) expressed differentially in the endometrial epithelium using the molecular techniques of mRNA differential display PCR (DD-PCR) and suppression subtractive complementary DNA (cDNA) hybridization (SSH). Sequence analyses of DD- and SSH-identified and cloned cDNAs indicated similarity of some to known mRNAs, including ß-lactoglobulin, alkaline phosphatase, type B and D endogenous sheep retroviruses, gp330/megalin, matrix Gla protein, and others. Other cDNAs were not similar to any known sequences and are considered novel, although some of these match human expressed sequence tags. In situ hybridization analyses of uteri from cyclic and pregnant ewes indicated that all DD-PCR- and SSH-identified mRNAs were expressed in either the endometrial lumenal and/or glandular epithelium, although some were also expressed in other uterine cell types. Northern and in situ hybridization analyses revealed that patterns of mRNA expression for most clones were affected by the day of the estrous cycle and pregnancy in a manner consistent with regulation by progesterone. Studies demonstrate the utility of the ovine UGKO model as a tool with which to identify known and novel uterine epithelial-specific genes. Cloned cDNAs identified here are expressed sequence tags useful for comparative and physical genetic mapping and may be used to reveal new factors and pathways regulating endometrial function.


    Introduction
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
THE OVINE uterus consists of two uterine horns connected by a short body. The uterine wall can be divided functionally into the endometrium and myometrium. As in other mammals, the ovine uterus is the preferred site for development of the conceptus, particularly as ectopic pregnancies do not occur in sheep. The normal adult endometrium of sheep consists of two epithelial cell types, luminal epithelium (LE) and glandular epithelium (GE), two stromal zones or compartments, including the shallow stratum compactum and the deeper stratum spongiosum, blood vessels, and immune cells. The ovine endometrium is further divided into raised aglandular caruncular areas, consisting of LE overlying compact stroma, and intercaruncular areas that are intensely invested with GE. Synepitheliochorial placentation in sheep involves interdigitation and fusion of placental cotyledons with endometrial caruncles to form placentomes, which serve a primary role in fetal-maternal gas exchange and placental acquisition of nutrients. Intercaruncular endometrial areas contain large numbers of uterine glands that synthesize and secrete a complex array of proteins and related substances termed histotroph. Epithelial products in this category include a wide variety of enzymes, growth factors, cytokines, lymphokines, hormones, transport proteins, and other substances (1). The histotroph undoubtedly plays an important role in conceptus nourishment, attachment, implantation, placentation, and immunoprotection (2, 3, 4, 5, 6).

The available evidence for both the sheep and pig strongly supports the idea that secretions from endometrial epithelium influence conceptus development, onset of pregnancy recognition signals, and growth of the fetus and placenta (5, 6, 7, 8, 9). Evidence from a variety of mammalian uteri, including those of humans, nonhuman primates, sheep, and pigs, indicates that both endometrial LE and GE are secretory, although their secretory functions differ (2, 10). For example, uteroferrin is secreted by GE, whereas serine protease inhibitors are secreted by LE (11). Differences in gene expression between endometrial LE and GE in ruminants and pigs lend support to the ideas that secretions of LE prevents invasion of the endometrium and promotes conceptus adhesion and epitheliochorial placentation, whereas secretions of GE supports conceptus (embryo and associated extraembryonic membranes) growth and development (2, 8). A few proteins produced by endometrial glands have been identified and characterized in ungulates, but their functions during the estrous cycle and pregnancy are largely unknown.

In farm animals (sheep, cattle, and pigs), endometrial gland development or adenogenesis occurs rapidly after birth and is essentially complete after about 1 month (12, 13, 14). Birth and the subsequent withdrawal from a progesterone-dominated prenatal environment were proposed to be an endocrine cue for development of endometrial glands in the neonatal ovine uterus (13). Subsequently, Bartol et al. (15) ovariectomized neonatal ewe (female) lambs on postnatal day (PND) 0 (birth) and administered a potent 19-norprogestin implant for 13 days. Progestin administration inhibited endometrial gland development, as reflected by the absence of glands on PND 13. Removal of the implant on PND 13 permitted glands to develop by PND 26. However, compared with normal uteri from PND 26, these glands were not well developed and were histologically abnormal in appearance. Collectively, these studies suggested that prenatal endocrine conditions favor the development and differentiation of the uterine wall layers and the caruncular area of the endometrium; however, removal of uterine tissues from inhibitors of endometrial gland development occurred at birth and permitted site-specific proliferation of the endometrial GE in intercaruncular areas (15). The strategy of prolonged progestin exposure of neonatal ewe lambs was used recently to prevent development of endometrial glands in the ovine uterus epigenetically, thereby producing a unique adult endometrial phenotype characterized by the absence of uterine glands, the ovine uterine gland knockout, or UGKO, phenotype (14, 16).

Given that the adult UGKO ewes lack endometrial glands, a molecular comparison of their glandless endometrium to that of normal gland-containing sheep could be used to rapidly identify genes expressed by the endometrial epithelium. The objective of these studies were to use endometrium from normal and UGKO ewes to identify and clone messenger RNAs (mRNAs) expressed in the endometrial epithelium by the molecular techniques of mRNA differential display PCR (DD-PCR) and PCR-based suppression subtraction hybridization (SSH). The results indicate that either technique can be used successfully to identify and clone many known and novel endometrial epithelial mRNAs.


    Materials and Methods
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
Animals
All experimental and surgical procedures involving animals were approved by the agricultural animal care and use committee of Texas A&M University (Animal Use Protocol 7–286).

Generation of UGKO ewes
Neonatal ewe lambs were assigned at birth (day 0) to one of two treatments. Control (CX; n = 8) ewe lambs received no implants. Treated ewes (UGKO; n = 9) received a single, sc administered implant every 2 weeks for 32 weeks. This progestin implant releases approximately 350 µg of a nonmetabolizable 19-norprogestin (compound SC-21009; 17{alpha}-acetoxy-11ß-methyl-19-norpreg-4-ene-3,20-dione; Murial, Athens, GA) per day for at least 14 days (15). Two to 4 weeks after the last implant was administered, uteri were obtained from CX and UGKO adult ewes at necropsy. The endometrium was physically dissected from the myometrium, frozen in liquid nitrogen, and stored at -80 C for RNA extraction and analysis. For all differential mRNA analyses, endometrium was used from ewes in the luteal phase, as ascertained by the presence of a corpus luteum on the ovary.

Cyclic and pregnant ewes
Mature ewes of primarily Rambouillet breeding were observed daily for estrous behavior using vasectomized rams. Allewes exhibited at least two estrous cycles of normal duration (~16–18 days) before use in this study. At estrus (day 0), ewes were assigned randomly to cyclic or pregnant status. Ewes assigned to pregnant status were bred at estrus and at 12 h and 24 h postestrus with intact rams. Fifty-two ewes were ovariohysterectomized (n = 4 ewes/day) on days 1, 3, 5, 7, 9, 11, 13, and 15 of the estrous cycle or days 11, 13, 15, 17, and 19 of pregnancy. In cyclic ewes and in pregnant ewes on days 11–17, the uterine lumen was flushed with 20 ml sterile saline at hysterectomy. Pregnancy was confirmed by the presence of an apparently normal conceptus in uterine flushings (days 11–17) or extension of the interestrous interval (day 19). Several sections (~0.5 cm) from the midportion of each uterine horn were fixed in fresh 4% paraformaldehyde in PBS (pH 7.2). In monovulatory pregnant ewes, care was taken to mark uterine tissue samples as contralateral or ipsilateral to the ovary bearing the corpus luteum. After 24 h, fixed tissues were changed to 70% ethanol for 24 h and then embedded in Paraplast-Plus (Oxford Labware, St. Louis, MO). Analyses conducted in the present study used endometrium only from the ipsilateral pregnant uterine horn.

DD-PCR
Total RNA was prepared from the endometrium of normal CX and UGKO uteri using the Trizol reagent (Life Technologies, Inc., Gaithersburg, MD) according to the manufacturer’s directions. Total RNA samples were digested with ribonuclease (RNase)-free deoxyribonuclease I to remove contaminating genomic DNA (17). The technique of mRNA DD-PCR (18) was then performed according to the manufacturer’s recommendations using a RNAimage Kit (GenHunter Corp., Nashville, TN) and [{alpha}-33P]deoxy-ATP in combination with a Genomyx LR PAGE system (Genomyx Corp., Foster City, CA). Autoradiographs of dried gels were prepared by overnight exposure to BioMAX MR film (Eastman Kodak Co., Rochester, NY). Bands corresponding to differentially expressed mRNAs were excised from the acrylamide gel, reamplified using PCR, and then cloned into PCR2.1 using the T/A Cloning Kit (Invitrogen, Carlsbad, CA).

PCR-based subtractive hybridization
As a complimentary approach to DD-PCR, the PCR-Select complementary DNA (cDNA) subtraction kit (CLONTECH Laboratories, Inc., Palo Alto, CA) was used to compare the two populations of mRNA and obtain a library of differentially expressed cDNAs. The technique of PCR-based SSH prevents undesirable amplification of common cDNAs and permits enrichment of differentially expressed cDNAs (19). Using the kit according to the manufacturer’s recommendations, two types of PCR subtracted ovine endometrial cDNA libraries were generated: 1) a CX library with UGKO cDNAs subtracted (CX-UGKO) using CX endometrial cDNAs as tester and UGKO as driver, and 2) a UGKO library with CX cDNAs subtracted (UGKO-CX) using UGKO endometrial cDNAs as tester and CX as driver. The efficiencies of the SSH methods were evaluated with kit controls in which bacteriophage {Phi}X174/HaeIII DNA was used as tester, and human skeletal muscle cDNA was used as driver. Skeletal muscle double stranded cDNAs were spiked with {Phi}X174 DNA digested with HaeIII to a total of 0.2%. As shown in Fig. 2AGo (lane 3), the {Phi}X174/HaeIII DNA (1.3, 1.1, 0.9, 0.6, and 0.3 kb) was efficiently subtracted out. Subtracted cDNAs were cloned into pCR2.1 using the Invitrogen T/A cloning kit, and the resulting libraries were propagated in DH5{alpha} bacteria.



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Figure 2. Generation of subtracted cDNA libraries using normal CX and UGKO endometrial mRNA and PCR-based SSH. Polyadenylated mRNA was isolated from endometrial total RNA and used for generation of subtracted cDNA libraries using the CLONTECH Laboratories, Inc. PCR-Select cDNA subtraction kit. All PCR products were analyzed by 2% agarose gel electrophoresis and stained with ethidium bromide. A, Secondary PCR products from subtracted and unsubtracted cDNA samples. Note the decrease in abundance of cDNAs present in subtracted samples compared with unsubtracted samples, particularly in the skeletal muscle (SM) control spiked with {Phi}X174/HaeIII DNA. Lane 1, PGEM DNA size markers; lane 2, PCR control (no template); lane 3, subtracted human skeletal muscle (SM) kit control; lane 4, unsubtracted SM kit control; lane 5, subtracted CX (- UGKO); lane 6, unsubtracted CX; lane 7, subtracted UGKO (-CX); lane 8, unsubtracted UGKO. B, Secondary PCR products from subtracted CX and UGKO cDNAs. Note the repeatable presence of more subtracted cDNAs in CX than in UGKO subtracted samples. These cDNAs were used to generate bacterial libraries and as probes for differential screening of the CX subtracted cDNA library. Lane 1, One-kilobase DNA ladder; lanes 2–4, CX (-UGKO) cDNAs; lanes 5–7, UGKO (-CX) cDNAs; lane 8, PGEM DNA markers. C, Analysis of SGP-1 expression in CX and UGKO subtracted cDNAs. Lane 1, pGEM DNA markers; lane 2, CX cDNAs as template; lane 3, UGKO cDNAs as template.

 
Differential screening of the CX endometrial subtracted cDNA library
Colonies (n = 100) from the CX-UGKO cDNA library were picked at random, and plasmid DNAs were prepared using the QIAprep Spin Miniprep Kit (QIAGEN, Valencia, CA) according to the manufacturer’s protocol. Duplicate DNA slot blots were then made using a Nytran Plus positively charged nylon membrane (Schleicher and Schuell, Keene, NH) and a slot blot manifold (Schleicher and Schuell) (17). CX-UGKO (forward subtracted) and UGKO-CX (reverse subtracted) cDNAs were prepared as described in the CLONTECH Laboratories, Inc. PCR-Select Differential Screening Kit user manual (PT3138–1) and randomprimed labeled (25 ng each) with [{alpha}-32P]deoxy-CTP using a DECAprime II kit (Ambion, Inc., Austin, TX). DNA slot blots were then probed using radiolabeled CX or UGKO cDNAs and ExpressHybe (CLONTECH Laboratories, Inc.). After hybridization and washing, the radioactivity associated with each slot was quantitated by electronic autoradiography using an Instant Imager (Packard, Meriden, CT). Autoradiographs were prepared using BioMAX MR film (Eastman Kodak Co.) and cassettes with intensifying screens. Exposure times varied from 1–3 days. The sizes of true differentially expressed cDNA clones were determined by restriction enzyme digestion of purified library plasmid clones and agarose gel electrophoresis.

DNA sequencing and analysis
Sequences of DD-PCR and SSH cDNAs were obtained using an ABI PRISM Dye Terminator Cycle Sequencing Kit (Perkins-Elmer PE Applied Biosystems, Foster City, CA) and a ABI PRISM model 377 DNA Sequencer (P-E PE Applied Biosystems) at the Gene Technologies Core Facility (Department of Biology, Texas A&M University). Nucleic acid similarity searches were performed using the basic local alignment and search tools (BLAST) at the National Center for Biotechnology Information (NIH, Bethesda, MD) (20). Nucleotide sequence structure analyses were performed using the BCM search launcher (Human Genome Sequence Center, Baylor College of Medicine, Houston, TX) (21).

RNA isolation and analyses
RNA isolation. Total cellular RNA was isolated from endometrial samples using the Trizol reagent (Life Technologies, Inc., Grand Island, NY).

Northern blot hybridization analysis. Endometrial total RNA was denatured, separated using a 1.5% agarose denaturing gel, and then transferred onto a Nytran Plus positively charged nylon membrane (Schleicher & Schuell, Inc.) by downward blotting as described previously (22). Radiolabeled antisense complementary RNA (cRNA) probes were then generated from linearized plasmid DNA templates by in vitro transcription with [{alpha}-32P]UTP and either SP6 or T7 bacterial RNA polymerases using a MAXIscript SP6/T7 kit (Ambion, Inc.). Membranes were hybridized with radiolabeled antisense cRNA probes and washed as described previously (22). After washing, nonspecific hybridization was removed by RNase A digestion (17). After digestion and washing, autoradiographs were produced using X-Omat AR film (Kodak) and cassettes with intensifying screens.

In situ hybridization analysis. The location of mRNA in uterine tissue sections was determined by in situ hybridization analysis as described previously (22). Deparaffinized, rehydrated, and deproteinated uterine tissue sections (5–7 µm) were hybridized with radiolabeled antisense or sense cRNA probes generated from linearized plasmid templates using in vitro transcription with [{alpha}-35S]UTP (3000 Ci/mmol; Amersham Pharmacia Biotech, Aylesbury, UK). Autoradiographs of slides were prepared using Kodak BioMAX MR film for a 16-h exposure period. Autoradiography was accomplished using Kodak NTB-2 liquid photographic emulsion (17). Slides were stored at 4 C for 1–2 weeks as judged from autoradiographs, developed in Kodak D-19 developer, counterstained with Harris’ modified hematoxylin in acetic acid (Fisher Scientific, Fairlawn, NJ), dehydrated through a graded series of alcohol to xylene, and coverslipped.

Photomicroscopy. Photomicrographs were taken under brightfield and darkfield illumination using a Carl Zeiss Axioplan2 photomicroscope (New York, NY) fitted with a Hamamatsu chilled 3CCD color camera (Hamamatsu, Japan). Digital images were captured and assembled using Adobe Photoshop 4.0 (Adobe Systems, Seattle, WA) and a MacIntosh PowerMac G3 computer (Apple Computer, Cupertino, CA). Black-and-white prints were printed electronically using a Kodak DS8650 color printer.


    Results
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
Effect of progestin treatment on uterine gland differentiation
In all control ewes, intercaruncular endometrium was intensely glandular (Fig. 1AGo). In striking contrast, the endometrium of progestin-treated ewes was devoid of glands (n = 7/9) or contained only a very few glands (n = 2/9). Thus, progestin treatment ablated uterine gland differentiation and created an adult UGKO endometrial phenotype. A simple, ruffled LE overlying compact stroma was observed in intercaruncular endometrium for UGKO ewes, whereas glandularity was intense in these same endometrial areas in normal uteri from control ewes. The endometrium from progestin-treated ewes also lacked clear delineation of stromal zones characteristic of intercaruncular endometrial areas in uteri from normal control ewes, as defined by a dense stratum compactrum and loose stratum spongiosum. No distinct differences in myometrial histology were observed.



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Figure 1. Histological and mRNA DD-PCR analysis of endometrium from normal and UGKO ewes. A, Histological analysis of the uterus of CX ewes and ewes treated with a 19-norprogestin implant (UGKO) from birth to 32 weeks of age. Cross-sections (5–7 µm) of the uterine wall were stained with hematoxylin and eosin. Note the ruffled lumenal epithelium (*) and lack of uterine glands and stratum spongiosum in the endometrium. L, Lumenal epithelium; G, glandular epithelium; M, myometrium; SC, stratum compactum; SS, stratum spongiosum; V, blood vessel. B, mRNA DD-PCR. Total endometrial RNA was isolated from uteri of normal CX and UGKO ewes. The mRNA DD-PCR analyses were conducted using a GenHunter RNAimage kit and a Genomyx LR DNA sequencer. Autoradiographs of 4.5% denaturing urea sequencing gels, containing {alpha}-33P-labeled cDNAs generated by RT-PCR, by overnight exposure to Kodak BioMAX MR film. Arrows indicate putative differentially displayed mRNAs that were excised and reamplified by PCR.

 
mRNA differential display PCR
Differential mRNA expression was detected in endometrial total RNA samples from normal CX and UGKO uteri using mRNA DD-PCR (Fig. 1BGo). A total of 81 cDNAs were reamplified, cloned, and sequenced from CX and UGKO endometrial total RNA samples using this procedure. The majority (75 of 81) of the cDNAs were present in CX, but absent from UGKO samples. However, a few (6 of 81) of these cDNAs were found only in UGKO samples. All of the reamplified cDNAs were sequenced and analyzed for homology in the sequence databases using the gapped BLAST (20). Twelve of the 75 cDNAs reamplified from CX endometrium had significant sequence similarity (>90%) to known mRNAs, including glycosylation-dependent cell adhesion molecule-1 (GlyCAM-1) (23), ß-lactoglobulin (24), pregnancy-associated {alpha}2-globulin ({alpha}2-PEG) (25), E-MAP-115 microtubule-associated protein (26), mitogen-activated response kinase (27), endogenous type B and D sheep retroviruses (28, 29), and gp330/megalin (30, 31). Fifty-eight cDNAs from the CX endometrium and all six from the UGKO endometrium displayed low similarity to human expressed sequences tags (ESTs) or no similarity to any database sequences. These clones can be classified as novel and probably represent undiscovered genes transcribed in the endometrium. Only five DD-PCR clones were identical to a ribosomal RNA sequence that is expressed in all tissues.

PCR-based SSH
Using a CLONTECH Laboratories, Inc. PCR-Select cDNA subtraction kit, PCR-based SSH was used to compare the two populations of endometrial mRNA from normal CX and UGKO uteri and generate subtracted libraries containing differentially expressed cDNAs. Subtractions of cDNAs derived from CX and UGKO endometrial polyadenylated mRNA were performed in parallel with the subtraction of {Phi}X174/HaeIII DNA from human skeletal muscle mRNA as an internal efficiency control. In both types of subtractions (Fig. 2AGo), many more cDNAs were present in unsubtracted cDNAs (lanes 4, 6, and 8) than in subtracted cDNAs (lanes 3, 5, and 7), indicating that the subtraction efficiency was high. As observed with DD-PCR analyses, many more cDNAs were present in CX-UGKO than in UGKO-CX subtractions (Fig. 2BGo).

A PCR strategy was also employed to examine the efficiency of subtraction using primers designed to amplify a partial cDNA for ovine sulfated glycoprotein-1 (SGP-1), a prosaposin that is expressed predominantly in the endometrial GE of the ovine uterus (31). Using ovine SGP-1-specific primers, a cDNA product of expected size (~525 bp) was amplified from the subtracted CX cDNAs, but not from the subtracted UGKO cDNAs (Fig. 2CGo).

Differential screening of the CX-UGKO endometrial subtracted cDNA library
A differential screening procedure was performed on 100 random clones from the CX-UGKO subtracted cDNA library to identify cDNAs representing true differentially expressed mRNAs (Fig. 3AGo). Clones that are truly differentially expressed should hybridize predominantly with CX cDNA probe, whereas clones that hybridize with both CX and UGKO cDNA probes are considered background (24). Five SSH clones had no detectable hybridization signal and probably represent nondifferentially expressed mRNAs present at low levels in the subtracted library. Forty-five clones hybridized equally to both probes, suggesting that they probably do not represent differentially expressed mRNAs. Thirty-four clones hybridized to both probes, and the hybridization signal was different, as assessed by electronic autoradiography. However, only three of these clones (SSH 97, 179, and 196) had a difference in signal intensity of more than 3-fold and could be classified as true differentially expressed cDNAs by Wang and Brown (24). Sixteen clones hybridized only to the CX probe, but not to the UGKO probe, and were also classified as true differentially expressed cDNAs.



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Figure 3. Differential screening of random clones isolated from the CX-UGKO subtracted cDNA library. Clones present in the CX-UGKO subtracted bacterial cDNA library were isolated and used to prepare duplicate DNA slot blots. Slot blots were then hybridized with {alpha}-32P-labeled CX-UGKO or UGKO-CX cDNA probes. Blots were quantitated by electronic autoradiography and visualized by film autoradiography. Arrows denote true positives, as indicated by hybridization only to the CX-UGKO cDNA probe or a more than 3-fold difference in hybridization signal between probes.

 
Sequence analysis of differentially expressed clones
The 16 true differentially expressed cDNAs from the CX-UGKO subtracted library were sized by restriction enzyme digestion and then sequenced in both directions. The resulting nucleotide sequence was analyzed for similarity to all nonredundant database sequences using the gapped BLAST. Ten clones displayed high levels of homology (>90%) to known mRNAs present in the nonredundant nucleotide sequence database. As summarized in Table 1Go, these similar sequences included two endogenous sheep retroviruses (28, 29), matrix Gla protein (34), ovine mitochondrial genome (35), alkaline phosphatase (36), and gp330/megalin (30, 31). Interestingly, cDNAs for endogenous type B and D sheep retroviruses and gp330/megalin were also identified and cloned by DD-PCR. The SSH 48 cloned cDNA was similar to a short interspersed element (SINE) sequence that is present in bovine and ovine genomes and appears to have originated from the retrotransposable element class of nonlong terminal repeat retrotransposable elements (37). The SSH clones 61, 105, and 170 were homologous to portions of the ovine mitochondrial genome. SSH 61 had significant identity to cytochrome c-oxidase subunit 3, whereas SSH 105 and -170 were homologous to NADH subunits 2 and 3.


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Table 1. Aspects of selected DD-PCR and SSH cloned mRNAs

 
Five clones had no significant sequence similarity to any sequence in the nonredundant nucleotide sequence database, suggesting that these cDNAs represent the transcription products of novel and undiscovered genes expressed in the endometrium. Searches of the nonredundant database of ESTs revealed that novel SSH clones 100 and 117 had significant similarity to several human ESTs for unknown genes. These results suggest that novel SSH clones 97, 133, and 196 represent new ESTs for unknown genes expressed in the endometrium. Using sequence structure prediction tools of the BCM Search Launcher (21), the five novel SSH clones were predicted to contain either 5'- or 3'-untranslated regions with some coding sequence.

In situ hybridization analysis of differentially expressed cDNAs
In situ hybridization analyses, using probes generated from DD and SSH clones, identified which uterine cell type(s) produced the mRNAs in cyclic and pregnant ewes (see Fig. 4Go). Overall, analyses indicated that all clones detected mRNAs present in the endometrial LE and/or GE, although some were also expressed in other endometrial cell types. Results from SSH clones 48, 61, 100, 105, 134, and 170 are not shown in Fig. 4Go.



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Figure 4. In situ localization of selected DD and SSH cloned mRNAs in the endometrium of cyclic and pregnant ewes. Cross-sections of the uterine wall from cyclic (C) and pregnant (P) ewes were hybridized with {alpha}-35S-labeled antisense or sense cRNA probes generated from linearized plasmid cDNA clones. Hybridized sections were digested with RNase, and protected transcripts were visualized by liquid emulsion autoradiography. Developed slides were counterstained lightly with hematoxylin, and photomicrographs were taken under brightfield or darkfield illumination. L, Luminal epithelium; cG, stratum compactum (superficial or shallow) glandular epithelium; sG, stratum spongiosum (deep) glandular epithelium; S, stroma; M, myometrium; TE, conceptus trophectoderm. Bar, 100 µm.

 
Two of the SSH clones (48 and 97) were specifically expressed only in endometrial glands. Expression of these GE-specific mRNAs increased between days 1 and 5, reached maximal levels by day 9 or 11, and then decreased between days 9 and 15 of the estrous cycle or days 11 and 19 of pregnancy. Two of the SSH clones (100 and 117) were specifically detected only in the LE and superficial glandular epithelium in the stratum compactum or subepithelial stroma. During the estrous cycle, expression of these two mRNAs was very low or not detected on day 1, increased between days 1 and 5, maximal on days 5–9, and then decreased to almost undetectable levels thereafter. During early pregnancy, mRNA levels in the LE and superficial GE were maximal on day 11 and then declined precipitously to almost undetectable levels thereafter.

DD (no. 54) and SSH clones (no. 29, 39, 133, 134, 135, 179, 188, and 196) were expressed in the endometrial LE and GE. In general, expression of these mRNAs in cyclic ovine uteri was low on day 1, increased between days 1 and 5, reached maximal levels between days 5 and 13, and then declined to day 15. In pregnant ewes, mRNA levels in the LE and GE declined between days 11 and 19, although this varied according to the individual clone. Further, SSH 179 probes also detected mRNA in the conceptus. Expression of four SSH clones (no. 61, 82, 105, and 170) was detected in all uterine cell types, with high levels of expression in endometrial epithelia. Transcriptional activity detected using probes generated from clones 61, 105, and 170 was not affected by day or pregnancy status. For SSH 82, mRNA was detected in LE, GE, stroma, and smooth muscle, including vasculature (media intima) and myometrium, and was affected by the day of the estrous cycle and early pregnancy. In uteri from cyclic ewes, mRNA levels increased in the stratum compactum between days 1 and 15, whereas levels remained high in other uterine cell types. In uteri from pregnant ewes, SSH 82 mRNA increased in the stroma, whereas expression in the LE and GE declined precipitously to low or undetectable levels.

Effects of day and pregnancy status on expression of SSH mRNAs in the ovine endometrium
Northern blot hybridization analyses were conducted for selected SSH clones that were specifically expressed in endometrial LE and/or GE. SSH clones (no. 61, 82, 105, and 170) that hybridized to all cell types were excluded from these analyses. Representative blots are presented in Fig. 5Go. Consistent with the fact that SSH48 was similar in sequence to a SINE, the SSH48 antisense cRNA probe detected many mRNAs that appeared as a smear (data not shown). Two mRNA transcripts (~2.5 and 6 kb) were detected using antisense cRNA probes derived from clones DD54 and similar SSH clones (no. 29, 39, 135, and 188). Likewise, two mRNA forms (4 and 2.3 kb) were detected for SSH 133 (data not shown). For SSH clones 97, 100, 117, and 196, single transcripts of approximately 4.9, 2.5, 4.7, and 4.7 kb were detected in endometrial total RNA. As expected by sequence similarity, a very large (~14 kb) mRNA transcript was observed in endometrial total RNA probed with the SSH 179 clone.



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Figure 5. Northern blot analysis of selected DD and SSH cloned mRNAs in ovine endometrium from cyclic and pregnant ewes. Northern blots were prepared with 20 µg endometrial total RNA from cyclic and pregnant (Px) ewes. Blots were hybridized with antisense {alpha}-32P-labeled cRNA probes generated from linearized plasmid cDNA clones and then digested with RNase A. Protected mRNA transcripts were visualized by autoradiography. Blots were not quantified. The positions of the 28S (4.4-kb) and 18S (1.8-kb) ribosomal RNAs are indicated on the left.

 
Effects of day of the estrous cycle and pregnancy on steady state levels of endometrial DD and SSH mRNAs from Northern blot analyses paralleled observations from in situ hybridization analyses. For most known and novel cDNA clones, endometrial mRNA levels increased after day 1, were maximal on days 5 and 9, and then declined to day 15 in cyclic ewes. In pregnant ewes, endometrial mRNA levels were generally highest on day 11 and then declined to low levels by day 15 or 19 (Fig. 5Go and data not shown).


    Discussion
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
Exposure of the developing neonatal uterus to a progestin for 32 weeks inhibited endometrial gland morphogenesis and produced a UGKO phenotype (14, 16). The uteri of UGKO ewes was essentially glandless, with only a ruffled LE and a compact stroma in intercaruncular areas in which numerous coiled, branched uterine glands are normally found. Appearance of LE surface undulations was observed in the fetal day 145 ovine uterus and was suggested to foreshadow uterine gland formation (13). Other than the absence of glandular epithelium, no distinct differences in histology or morphology of the stroma or myometrium were observed, except for a drastic reduction or absence of stratum spongiosum. Therefore, the endometrium of the UGKO uterus appears to consist of only caruncular areas, which contain a LE supported by dense stroma. These observations suggest that delineation of the stratum compactum and stratum spongiosum during postnatal intercaruncular endometrial morphogenesis requires the differentiation and development of endometrial glands. No consistent differences in uterine cell type-specific patterns of estrogen receptor, progesterone receptor (PR), or oxytocin receptor gene expression have been observed between adult normal and UGKO uteri (14, 16) (Stagg, A. G., F. F. Bartol, and T. E. Spencer, unpublished observations). However, the total length of uterine horns and wet weight were less in adult UGKO ewes than in normal control ewes (14, 16). Thus, exposure of the developing neonatal uterus to progestin and/or a lack of endometrial glands during prepubertal uterine morphogenesis potentially disrupts the stromal-epithelial interactions required for normal uterine growth, development, and function. It is also possible that prolonged exposure of the developing neonatal ovine uterus to a potent progestin permanently alters gene expression as well as cell proliferation in a uterine cell type-specific manner.

Studies presented here demonstrate the utility of the ovine UGKO model as a powerful tool with which to identify mRNAs transcribed in the endometrial epithelium. Using endometrium from normal gland-containing and UGKO glandless sheep, a combination of DD-PCR and SSH techniques was used to clone many known and novel mRNAs that are specifically located in endometrial epithelia of the ovine uterus. Both techniques facilitated the identification and cloning of similar mRNAs, i.e. endogenous sheep retrovirus and gp330/megalin, which illustrates the effectiveness of either technique as a discovery tool used in combination with the ovine UGKO model. More mRNAs were found to be expressed differentially in control than in UGKO total RNA samples by DD-PCR and in the CX-UGKO cDNA subtracted library generated by SSH. This finding was expected, given that the predominant difference between UGKO and normal endometrium is the absence of endometrial glands. However, DD-PCR analyses indicated the presence of differentially expressed mRNAs in UGKO endometrial samples. This finding was confirmed by the presence of cDNAs in the UGKO-CX endometrial cDNA subtraction. Thus, uterine glands may normally suppress the expression of certain genes that provide a basis for functional differences between intercaruncular and caruncular endometrial areas.

In situ hybridization confirmed that all of the mRNAs identified by DD-PCR and SSH were expressed in normal endometrial epithelium, although some were expressed in other uterine cell types. For DD and SSH epithelial-specific mRNAs, three patterns of mRNA expression were detected by in situ hybridization as follows: 1) GE only, 2) LE and superficial GE, and 3) LE and GE in both the stratum compactum and stratum spongiosum. These observations lend support to the idea that true diversity exists in LE and GE function. In ungulates, secretions of GE are hypothesized to support conceptus growth and development, whereas secretions of LE are thought to be involved in mechanisms that prevent invasion of the endometrium by the conceptus and promote adhesion and epitheliochorial placentation (5, 6, 7, 8, 9, 21). Molecular mechanisms regulating tissue and cell type specificity of epithelial gene expression in the endometrium are not well characterized, but are undoubtedly complex and are likely to involve cell type-specific transcription factors.

Northern blot and in situ hybridization analyses indicated that steady state levels of mRNA for most DD and SSH clones were affected by the day of the estrous cycle and/or pregnancy status. In general, expression of cloned mRNAs was low on day 1, increased to maximal levels between days 9 and 11, and then declined in endometrium from normal pregnant ewes. Although the conceptus removes much of the LE during superficial implantation, expression of most DD and SSH cloned mRNAs remained detectable in endometrial LE and GE in early pregnant ewes. These results suggest that transcription of the corresponding epithelial genes may be affected primarily by circulating progesterone and the epithelial content of PR. In cyclic and pregnant sheep, peripheral concentrations of progesterone increase after day 3 with formation of the corpus luteum and are maximal after day 9. In cyclic sheep, progesterone concentrations decrease between days 13 and 17 during luteolysis, whereas progesterone levels are maintained in pregnant sheep (38). Although progesterone levels are maintained in pregnant sheep, progesterone negatively autoregulates the expression of the PR in endometrial epithelium of both cyclic and pregnant sheep (38). In endometrial LE and shallow GE, expression of PR is low on day 1, maximal on day 5, and undetectable after days 11–13. In the deep GE of the stratum spongiosum, PR expression is reduced during late diestrus and early pregnancy, but mRNA and protein remain detectable at low levels until day 19. Neither the identity of novel mRNAs characterized here, nor the nature or function of proteins produced by their translation are known. However, epithelial-specific transcriptional activity regulated by progesterone is likely to result in the production of important maternal mediators of periimplantation conceptus development and survival. Such transcripts, and the proteins derived from them, may also serve as unique markers of progesterone action and uterine receptivity (2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 39).

Sequence analyses revealed that some of the cloned mRNAs expressed by endometrial epithelium displayed significant homology to existing sequences, whereas some clones had no homology to known mRNAs and were considered novel, albeit two of the SSH cloned cDNAs were similar to human ESTs for uncharacterized genes. Identification of mRNAs by DD and SSH shown previously to be expressed by endometrial glands in other mammalian uteri validates the utility of these techniques combined with the UGKO model system for the identification and cloning of epithelium-specific mRNAs. In this study, several genes known to be expressed by endometrial glands of other species were identified, including alkaline phosphatase, {alpha}2-PEG, ß-lactoglobulin, and gp330/megalin. {alpha}2-PEG and ß-lactoglobulin are expressed in the endometrial GE of the human and baboon uterus and are hypothesized to function in the transport of retinol and fatty acids (40). In this study, SSH clone 134 was found to have sequence homology to alkaline phosphatase and was specifically expressed in the endometrial LE and GE. Alkaline phosphatase has been localized to the endometrial epithelium in a number of mammalian uteri (41, 42) and may be involved in protein transport.

Both DD70 and SSH179 cDNA clones displayed high sequence homology to gp330/megalin. Antisense cRNA probes generated from these cDNAs were used to detect a 14-kb transcript in endometrial total RNA. In situ, this transcript was localized in endometrial LE and GE as well as in the conceptus. Using a rabbit antihuman gp330 antibody, positive immunostaining was also observed in apical aspects of these same ovine uterine and placental cell types (Spencer, T. E., unpublished observations). The gp330 glycoprotein has also been localized in human endometrial GE (43) and was detected in a number of murine epithelia (44). The gp330 protein is a member of the low density lipoprotein receptor family (45) and is generally concentrated on and restricted to apical portions of the cell surface. It binds multiple ligands in vitro such as calcium, plasminogen, extracellular matrix components, lactoferrin, clusterin, and lipoprotein lipase (45). Thus, gp330 may be an important mediator of membrane protein and ion trafficking in specialized epithelia found in the endometrium and conceptus.

Interestingly, several of the known DD and SSH cloned mRNAs are expressed in the epithelium of epitheliomesenchymal organs, such as the uterus, lung, and mammary gland. The DD clone 63 was similar to epithelial microtuble-associated protein 115 (E-MAP-115) (26). This microtubule-stabilizing protein appears to play an important role during reorganization of microtubules during polarization and differentiation of epithelial cells. The DD-PCR clone 67 was similar to mitogen-activated response kinase, a novel family of protein kinases that phosphorylate microtubule-associated proteins and trigger microtubule disruption (27). The DD-PCR clone 21 displayed a region of high sequence homology with glycosylation-dependent cell adhesion molecule 1 (GlyCAM-1) (23). GlyCAM-1 is an endothelial secreted ligand for L-selectin involved in lymphocyte extravasation. Immunoreactive GlyCAM-1 protein was found in the LE and GE of the ovine uterus and in uterine lumenal fluid (46). The function of this protein in the ovine uterus is not clear, although it may be involved in periattachment processes regulating trophectoderm adhesion to the endometrial epithelium.

The SSH clone 82 shares sequence homology with matrix Gla protein (MGP) (34). Expression of this gene has not been reported in the uterus. The antisense cRNA probe generated from the SSH 82 cDNA clone detected endometrial transcripts of the expected size (0.8 and 1.5 kb) and revealed transcriptional activity in LE, GE, stroma, and smooth muscle of the endometrial vasculature and myometrium. The MGP is a vitamin K-dependent extracellular matrix protein with wide tissue distribution and is found in the epithelium of most epitheliomesenchymal organs, such as the kidney (47), as well as in vascular smooth muscle (48). In the present study, MGP mRNA was located in all uterine cell types. However, spatial patterns of MGP expression were affected by day and pregnancy status in a cell type-specific manner. Interestingly, MGP mRNA first increased in the LE and GE. Strong signal for MGP was not detected in stroma until days 17 and 19 of pregnancy. The function of MGP is obscure, but MGP expression is correlated with development and maturation processes involving cell matrix interactions, such as lung branching morphogenesis (47, 49). Loeser and Wallin (50) reported that MGP is a cell adhesion molecule that promotes adhesion to the extracellular matrix through a receptor that requires {gamma}-carboxy-glutamic acid (Gla) residues. Therefore, this protein may play an important role in the development and differentiation of the endometrium during superficial implantation and synepitheliochorial placentation.

Also detected here was evidence of endometrial epithelial mRNAs for endogenous type B and D sheep retroviruses. Seven of the DD-PCR and three of the SSH clones identified by differential screening displayed high sequence homology with this retrovirus. This is not surprising given the abundance of ovine retroviral mRNA detected in the endometrium by Northern blot and in situ hybridization analyses. Indeed, steady state levels of this mRNA in the endometrium increased 24-fold between days 1 and 13 of the estrous cycle (Stagg, A. G., and T. E. Spencer, unpublished results). The JSRV is thought to be a causative agent of ovine pulmonary carcinoma (28) and can be found widely distributed in the genomic DNA of ungulate mammals, including cattle, sheep, and goats (51). The genome of this virus does not appear to contain an oncogene, and the mechanism by which it causes disease is still unknown. The function of this retrovirus in the sheep uterus is unknown, although the retrovirus can be detected in DNA of ovine pulmonary carcinoma-affected and unaffected sheep (51). Endogenous retroviral sequences have also been found in the human and mouse embryo, fetus, and placenta and in mouse testis, but their physiological and functional significance remains unknown (52). Another interesting finding was the identification of differentially expressed mRNAs that corresponded to products of the mitochondrial genome (SSH clones 61, 105, and 170). SSH 61 was homologous to the cytochrome c-oxidase subunit, whereas SSH 105 and 170 were homologous to NADH subunits 2 and 3. In situ hybridization localized these three mRNAs to all uterine cell types, although expression was very high in the endometrial epithelium (Stagg, A. G., and T. E. Spencer, unpublished results). Given that mitochondrial mRNAs have polyadenylated tails, the SSH procedure allowed for identification of these mRNAs by comparison of endometrium from control and UGKO ewes. These results suggest that the glandular epithelial cells of the ovine uterus contain more mitochondria than other uterine cell types.

Five of the SSH clones were found to have no sequence homology in the nonredundant sequence databases and were considered novel. The SSH 97 mRNA was novel and specifically expressed in endometrial GE. Two other novel mRNAs (SSH 100 and 117) were expressed in the endometrial LE and superficial GE. These cDNAs displayed significant sequence homology with several human ESTs. The remaining two novel mRNAs (SSH 133 and 196) were expressed in LE as well as GE in the stratum compactum and stratum spongiosum. The cloning of these novel mRNAs expressed by various types of epithelium in the endometrium is an important first step in the identification and characterization of genes controlling endometrial function during the cycle and pregnancy. The novel epithelial cDNAs cloned in this study also provide functionally cloned ovine ESTs. The ESTs are useful reagents for constructing a detailed comparative and physical map of novel uterine epithelium-expressed genes and can be used to develop polymorphic markers suitable for genetic fine mapping, interval analysis, and marker-assisted selection (53). In addition, the identified and cloned cDNAs/ESTs can be used as reagents for obtaining the complete sequence of the identified mRNAs and regulatory regions of the corresponding genes. Future research will be aimed at defining the nature and function of the known and novel mRNAs in the ovine uterus and should provide new factors and pathways regulating mammalian endometrial function and markers of progesterone action and uterine receptivity.


    Acknowledgments
 
The authors thank Mr. Todd Taylor and Dr. W. Shawn Ramsey of the Texas A&M Sheep and Goat Center for care and management of ewes; Dr. Robert C. Burghardt for assistance with photomicrography; and Dr. Nancy H. Ing and members of her laboratory for surgical assistance.


    Footnotes
 
1 This work was supported in part by National Research Initiative Competitive Grants Program/USDA Grants 98–35203-6322. Photomicrographs were prepared using facilities at the Texas A&M College of Veterinary Medicine Image Analysis Laboratory, which is supported in part by NIH Grant P30-ES-09106. Back

Received December 30, 1998.


    References
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 

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