Endocrinology Vol. 141, No. 7 2410-2421
Copyright © 2000 by The Endocrine Society
Dissection of Differentially Regulated (G+C)-Rich Promoters of the Human Parathyroid Hormone (PTH)/PTH-Related Peptide Receptor Gene1
Masanori Minagawa2,3,
Mei Yee Kwan2,
J. David Bettoun4,
Fady W. Mansour,
Justine Dassa,
Geoffrey N. Hendy,
David Goltzman and
John H. White5
Departments of Physiology (J.D.B., M.Y.K., F.W.M., J.D., G.N.H.,
D.G., J.H.W.) and Medicine (M.M., G.N.H., D.G., J.H.W.), McGill
University, Montréal, Québec H3G 1Y6, Canada; Calcium
Research Laboratory and Royal Victoria Hospital (M.M., G.N.H., D.G.),
McGill University, Montréal, Québec H3A 1A1, Canada; and
Department of Human Genetics (G.N.H.), McGill University,
Montréal, Québec H3A 1B1, Canada
Address all correspondence and requests for reprints to: Dr. John H. White, Department of Physiology, McGill University, McIntyre Building, 3655 Drummond Street, Montréal, Québec H3G 1Y6, Canada. E-mail: jwhite{at}med.mcgill.ca
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Abstract
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The PTH/PTH-related peptide (PTHrP) receptor (PTHR) is required for
normal skeletal development, and a wide array of physiological
responses mediated by PTH and PTHrP. We have previously identified
three promoters, P1-P3, which control human PTHR gene transcription. P2
and P3 are (G+C)-rich, function in a number of tissues, lie within the
same CpG island, and display many hallmarks of housekeeping promoters.
However, they are differentially regulated during development as P2,
but not P3, functions in fetal tissues. Here, we have used both stably
and transiently transfected human osteoblast-like cells to delineate
regions of P2 and P3 required for promoter activity. Deletion analyses
performed in stably transfected cells indicated that sequences
extending from -91 to -12 relative to the transcription start site
were required for function of the P2 promoter. No negative regulatory
elements were detected in P2. In contrast, deletion of an A-rich region
of P3 extending from -147 to -115 was required for optimal basal
activity, suggesting that this sequence acts as a repressor of P3.
Strikingly, however, whereas the A-rich region also functioned as a
negative element when inserted upstream of the (G+C)-rich P2 promoter,
it enhanced expression from the thymidine kinase promoter, suggesting
that its function depends on other transcription factors bound to
promoter sequences. Fine deletion of P3 sequences proximal to -115
implicated Sp1 motifs and downstream initiation sites in P3 function.
These studies indicate that function of P2 and P3 is controlled by
ubiquitously expressed transcription factors and raise the possibility
that P3 activity is repressed during fetal development.
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Introduction
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MANY OF THE physiological responses of PTH
and PTH-related peptide (PTHrP) are transmitted through a common
receptor (PTHR). The PTHR is required for normal skeletal development
(1), is widely expressed, and transmits a wide range of physiological
signals propagated by both PTH and PTHrP. PTH acts to tightly maintain
circulating concentrations of calcium ions. PTH is released
specifically from the parathyroid glands in response to a decrease
in plasma calcium levels and acts on receptors expressed in kidney and
bone to stimulate calcium reabsorption and increase phosphate excretion
(2, 3). PTHrP can mimic many of the effects of PTH when overexpressed
by cancers. However, in contrast to PTH, PTHrP is thought to act in a
paracrine/autocrine manner under physiological conditions. Moreover,
PTHrP is widely expressed and functions to modulate cellular growth and
differentiation (4, 5, 6, 7). Binding of PTH or PTHrP to the PTHR has been
shown to stimulate the production of intracellular cAMP and inositol
1,4,5 trisphosphate (8, 9, 10).
The PTHR is a G protein-coupled receptor containing seven putative
transmembrane domains. Genetic studies have shown that the PTHR is most
closely related to a subfamily of receptors for peptide hormones,
including GH-releasing hormone, calcitonin, vasoactive intestinal
peptide, and glucagon (11, 12, 13, 14, 15, 16). The 5' regulatory regions of the mouse,
rat, and human PTHR genes are complex, and multiple promoters have been
identified giving rise to differentially spliced transcripts (12, 17, 18, 19). Expression of the mouse PTHR gene is controlled by an upstream
promoter P1, whose activity is mainly restricted to kidney. RNase
protection analyses have suggested that P1 activity accounts for
approximately 90% of renal PTHR transcripts in the mouse (17, 20). The
downstream promoter P2 is ubiquitously active and likely accounts for
the broad tissue distribution of the PTHR (12, 17, 20).
Regulation of the PTHR gene expression in human is more complex than in
mouse. The P1 and P2 promoter regions and the corresponding 5'
untranslated region exons are well conserved between mouse and human
(18). However, the activity of P1 in human kidney is lower than in the
mouse. We identified a third promoter P3 that is highly active in
kidney in human, but not mouse (21). Moreover, P3-specific transcripts
were also expressed in a number of human tissues other than kidney.
None of the PTHR gene promoters identified in mouse or human contain a
TATA box homology. Mouse and human P1 promoters contain a number of
start sites spread over at least 100 bp (17, 18), and a (G+C) content
of approximately 50%. Mouse and human P2 promoters are highly
(G+C)-rich and contain single start-sites in regions containing Sp1
motifs (12, 18). The human P3 promoter is superficially similar to P2,
as it is (G+C)-rich and contains a number of Sp1 motifs. Indeed, the
human P2 and P3 promoters lie within the same CpG island. However, the
two promoters are clearly regulated differently as P2 but not P3 (or
P1) is active at the mid-gestational period of human development
(21).
We were interested in comparing the regulatory elements required for
expression of the human P2 and P3 promoters. Osteoblasts express the
PTHR and are major sites of the calcium regulatory activity of PTH (2, 3, 10). In this report, we have performed a series of studies analyzing
the regions of P2 and P3 required for expression in stably transfected
cells human osteoblast-like cell lines HOS and SaOS-2. Increasing
evidence has shown that chromatin can control the access of factors to
promoter regions and that transcriptional regulators can modulate
chromatin structure (22, 23, 24, 25). Other work has suggested that chromatin
structure is not fully recapitulated on transiently transfected
templates (26). PTHR promoter-reporter cassettes were therefore stably
propagated in episomal vectors that have been shown to replicate
autonomously in the form of nucleosomes (27). Our results show that
minimal regions of P2 and P3 are required for activity in stably
transfected cells. However, the regulation of P3 is more complex, as
the proximal promoter region is composed of both positive and negative
regulatory elements, which may provide insights into the complex
regulation of P3 function.
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Materials and Methods
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Plasmid recombinants
The luciferase gene was excised from pXP2 (28) by complete
digestion with BamHI and partial digestion with
XbaI, and subcloning of the 1.8-kb luciferase gene fragment
into BamHI-XbaI-digested pSK+
(Stratagene). In parallel, the
BamHI-SalI fragment from pGRE5, containing a
polyadenylylation signal (29), was subcloned in pSK+, to create
pBSSK+. The luciferase gene was excised from pSK+ by digestion with
EagI, end-filling with Klenow fragment, and digestion with
BamHI. This fragment was inserted in pBSSK+, which had been
digested with BgIII, end-filled with Klenow fragment and digested with
BamHI. The luciferase gene-polyadenylylation signal was then
excised with BamHI and SalI and inserted into the
Epstein-Barr virus (EBV) episomal vector p220.2 (30) digested with
BamHI and SalI to create pLuc-EBV. To construct a
P1-luciferase reporter plasmid, a 1.6-kb
BamHI-BglII fragment of P1 (-1428 to +174) was
excised from a modified version of Bluescript SK+ (pSKb), in which the
XbaI site was destroyed by insertion of an oligonucleotide
containing a BglII site, and subcloned into the polylinker
of pLuc-EBV. A P2-luciferase recombinant was obtained by excising a
1.1-kb SacI fragment (-954 to +96) from Bluescript SK+,
removing the 3' protruding ends by T4 DNA polymerase treatment, and
insertion into the SpeI site of pSKb (see above). The
orientation of the insert was confirmed by restriction digestion and
DNA sequencing. The insert was then excised as a
BamHI-BglII fragment and subcloned into the
polylinker pLuc-EBV. pP3Luc-EBV was created by rendering a 1.1-kb
NcoI-AvrII fragment of P3 (-842 to +244) blunt-ended with
Klenow fragment and subcloning it into pSKb. Insert orientation was
checked by restriction digestion and DNA sequencing, and the fragment
excised as a BamHI-BglII fragment and subcloned
it into pLuc-EBV.
Truncated P2 and P3 promoter fragments were created by exonuclease III
digestion as follows: promoter fragments in pSKb (2.5 µg) were
digested upstream of promoter regions with EcoRI, and
end-filled using Klenow fragment and
-phosphorothioate nucleoside
triphosphates. Fragments were then digested with BamHI,
which cuts downstream of EcoRI, at the 5' end of
promoter fragments. Digested DNA was purified by phenol-chloroform
extraction and ethanol precipitation, and resuspended DNA was treated
with 300 U of exonuclease III (Amersham Pharmacia Biotech,
Arlington Heights, IL) at 37 C in 60 µl final volume according
to the manufacturers instructions. Aliquots (5 µl) were removed
every 30 sec and added to 7.5 µl of S1 nuclease mix (Amersham Pharmacia Biotech) on ice. After all samples were taken,
aliquots were incubated at room temperature for 30 min, and then
incubated at 70 C for 10 min. DNA was purified by phenol-chloroform
extraction and ethanol precipitation, and end-filled with Klenow
fragment. Truncated promoter fragments were then excised with
EcoRV and BglII and inserted in pLuc-EBV,
which had been digested in the polylinker with Asp718 and treated with
Klenow and then digested with BglII. Finer deletion
analysis of the P3 promoter downstream of -115 was performed by PCR
amplification of appropriate promoter fragments using 5'
oligonucleotides containing Asp718 sites and a 3' oligonucleotide
containing a BglII site. PCR products were digested with
Asp718 and BglII and products were ligated into
similarly digested pLuc-EBV. The recombinant A-rich region (ARR)-tk-Luc
was constructed by inserting an ARR oligonucleotide spanning -147 to
-110 and flanked by BamHI and BglII ends
into the BamHI site upstream of the tk promoter in
tk-Luc. All recombinants were verified by DNA sequencing.
Tissue culture and transfections
HOS and SaOS-2 cells were propagated in DMEM + 10% FBS. One day
before transfection, cells were seeded in 6-well plates at
approximately 35% confluence. Transfections were performed with
Lipofectin (Life Technologies, Inc., Gaithersburg, MD)
using 2.5 µg of plasmid DNA. If cells were transfected transiently,
cells were harvested 48 h later, and extracts were prepared by
resuspending cells in 200 µl of Reporter lysis buffer (Promega Corp.). If cells were maintained for stable transfections,
hygromycin (170 µg/ml for HOS, or 80 µg/ml for SaOS-2) was added
72 h after transfection. Medium was changed every 48 h for 14
to 18 days. At this time, untransfected cells cultured in the presence
of hygromycin were killed, and surviving transfected cells were
transferred to a T75 flask, where they were grown under selective
conditions until 40% confluence. At this stage, cells were split into
six-well plates and grown until 80% confluence. Cells from one well
were used to perform Hirt extractions (see below), and cells from three
to five remaining wells were assayed individually for luciferase
activity, by preparing cell extracts in 200 µl of Reporter lysis
buffer (Promega Corp.). Luciferase assays were normalized
for variations in protein concentration between extracts.
Analysis of plasmid copy number by Hirt extraction
Cells from one well of a six-well plate were washed twice with 4
ml of PBS, and scraped into 350 µl of water. One hundred microliters
of resuspended cells were used to determine protein concentration. Hirt
extractions were performed by adding 200 µl of resuspended cells to
200 µl of 20 mM Tris-HCl (pH 8.0), 2 mM EDTA,
2% SDS, 400 µg/ml proteinase K, and incubating at 37 C for 2 h.
Incubations were chilled to 4 C on ice, 100 µl of 5 M
NaCl were added, and incubations were continued overnight on ice.
Incubations were centrifuged at 17,000 x g for 20 min
at 4 C, and 400 µl of supernatant was extracted 3 times with 1:1
phenol/chloroform, ethanol precipitated, and resuspended in 100 µl of
water. DNA was digested with BamHI and SalI to
excise promoter-luciferase cassettes and electrophoresed on a 1%
agarose gel. Southern blotting was performed as described (18) using a
540 bp probe generated from an XbaI-EcoRI
fragment of the luciferase gene.
Primer extension analysis
Ten picomoles of primer P3Up2 (5'CTATGGGACCCCGGCGTCC3'), which
is complementary to sequences starting 61 bp upstream of the SS exon,
were labeled for 1 h at 37 C with
32P-
-ATP using T4 polynucleotide kinase. One
tenth of this reaction was incubated with 10 µg of kidney total RNA
or 50 µg of HOS total RNA, or 10 µg of yeast transfer RNA as a
control, overnight at 55 C in 300 mM KCl, 20 mM
Tris-HCl (pH 8.3), 2 mM EDTA in a final volume of 26 µl.
Samples were then put on ice, and 4 µl of 25 mM Tris-HCl
(pH 8.0), 60 mM MgCl2, 10
mM DTT, 5 mM dNTPs, 2 U of RNAguard
(Amersham Pharmacia Biotech), and 100 U of M-MLV reverse
transcriptase (Life Technologies, Inc.) were added. After
90 min at 43 C, the enzymes were inactivated for 10 min at 75 C, and
the reaction was extracted once with phenol and ethanol precipitated.
One quarter of the reaction was denatured for 2 min at 80 C and run on
a 6% denaturing polyacrylamide gel along with a sequencing reaction as
molecular weight markers.
RT-PCR analysis
Three micrograms of total RNA were precipitated, resuspended in
6 µl of 1 x DNase 1 digestion buffer (Promega Corp.) containing 0.5 U of DNase I, incubated for 15 min at 37 C
and for 10 min at 75 C, and put immediately on ice. Two microliters
were immediately added to 18 µl of a RT mix containing 0.5 mmol/liter
of each dNTP, 5 mmol/liter of DTT, 1 mmol/liter of 6mer random primers,
75 mmol/liter of KCl, 3 mmol/liter of MgCl2 in 50
mmol/liter of Tris-HCl (pH 8.3), and the reaction was allowed to
proceed for 1 h at 37 C, followed by 75 C for 10 min. For PCR
detection of P1 specific transcripts, 2 µl of the RT reaction were
subjected to a first round of 30 cycles of amplification consisting of
95 C for 30 sec, 56 C for 1 min, 72 C for 20 sec, using
5'AGGGAATTCAGGTCTTTTCTTGTCCCCAGC3' as the forward primer and
5'GACGTCATCTGCATCCACCAGCGC3' (hE1rev) as the reverse primer. One
microliter of the first reaction was then subjected to 30 more cycles
of amplification consisting of 95 C for 30 sec, 58 C for 1 min, and 72
C for 5 sec, using forward primer 5'AGTTGTGTGTCCTGGACACTACCA3' and
reverse primer 5'GCCTCCCCGTGGCCAACTTGAGTC3'. PTHR and ß-actin coding
sequences were detected by submitting 2 µl of the RT reaction to 24
cycles of amplification consisting of 95 C for 30 sec, 56 C for 1 min,
72 C for 25 sec. The forward primer for the PTHR was
5'CACCACTACTACTGGATTCTGGTG3', the reverse primer used was
5'GATTTCTTGATCTCGCTTGTACC3'. For ß-actin, the forward primer was
5'GCTGTGCTATCCCTGTACGC3', and the reverse primer was
5'GCCATGGTGATGACCGGC3'. All the above described reactions were
performed in a 50 µl volume in 1.5 mmol/liter
MgCl2, 50 mmol/liter KCl, and 10 mmol/liter
Tris-HCl (pH 9.0) using 2.5 U of Taq DNA polymerase
(Amersham Pharmacia Biotech). P3-specific transcripts were
detected using 28 cycles of PCR, consisting of 95 C for 30 sec, 58 C
for 45 sec, and 72 C for 15 sec, performed using 2 µl of RT reaction
in a 50 µl volume in 0.8 mmol/liter MgCl2, 50
mmol/liter KCl and 20 mmol/liter Tris-HCl (pH 8.3) using 2.5 U of
Taq DNA polymerase (Amersham Pharmacia Biotech). The forward primer was
5'ACGGAATTCCAGCCTGACGCAGCTCTGCACC3', and hE1rev (see above) was used as
the reverse primer. Amplification of P2-specific transcripts was
performed by subjecting 1 µl of the RT reaction to a touch-down PCR
under the following conditions, 45 sec denaturation at 95 C, 20 sec
elongation at 72 C and 1 min annealing starting at 58 C, down 1 C per
cycle to 51 C, under which conditions 25 cycles of amplification were
performed. The reaction was in 20 µl volume in 1.5 mmol/liter
MgCl2, 50 mmol/liter KCl, and 10 mmol/liter
Tris-HCl (pH 9.0) and in 5% formamide using 5 U of Taq DNA
polymerase (Amersham Pharmacia Biotech). The forward
primer was 5'GCCCGACATCCTGCAAGGC3', and the reverse primer was hE1 rev
(see above). PCR reactions (2/5th to 1/10th) were run on a 2% agarose
gel, transferred overnight to a nylon Hybond N+ membrane
(Amersham Pharmacia Biotech) and the DNA was covalently
attached by baking the membrane at 80 C under vacuum for 2 h.
Membranes were prehybridized for 30 min in 6 x NET (100
mM Tris-HCl pH 7.5, 0.9 M
NaCl, 6 mM EDTA), 10 x Denhardts, 0.5%
SDS, 10 mg/ml denatured salmon sperm DNA at 62 C, and then hybridized
in 6 x NET, 5 x Denhardts, 0.5% SDS, 1 mg/ml denatured
salmon sperm DNA with 106 cpm of end-labeled
oligonucleotides for 5 h at 62 C. The oligonucleotides used for
probing were: 5'CCCTAGGCGGTGGCGATGGGGACC3', for P2- and P3-containing
sequences, 5'CTGCAGCTTTAGGCCCGACTTG3' for P1-specific sequence, and
5'TGGCCATGAAGACAATGTAGTGGACG3' for coding sequence.
Electrophoretic mobility shift assays (EMSAs)
Nuclear extracts of HOS cells were prepared from four confluent
75 cm2 flasks using the protocol of Andrews and
Faller (31). Ten picomoles of oligonucleotide were end-labeled with
-32P-ATP with T4 polynucleotide kinase
(Amersham Pharmacia Biotech). For each EMSA, 2.5 µg of
nuclear extract in 1 µl was incubated in 10 µl final volume of 25
mM Tris-HCl (pH 8.0), 1 mM DTT, 50
mM KCl, 0.1% NP40, 20% glycerol, and 1 µg poly
deoxyinosine-deoxycytidine for 15 min at 4 C. Aliquots were further
incubated for 20 min at 25 C with 105 cpm (40 fmol) of
radiolabeled oligonucleotide and unlabeled competitor as indicated in
the figures. Samples were electrophoresed on 5% polyacrylamide gels
equilibrated in 0.5 x TBE. Gels were dried before
autoradiography.
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Results
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Promoter activities of the endogenous PTHR gene in human
osteoblast-like cell lines HOS and SaOS-2
The 5' regulatory region of the human PTHR gene contains 3
promoter regions, P1, P2, and P3 (Fig. 1A
). This arrangement gives rise to
transcripts containing 5' untranslated regions (5'UTRs) UI/U2, U3, and
U4 that are specific to P1, P2, and P3 promoters, respectively. The
activities of all three promoters in kidney and human osteoblast-like
cell lines HOS and SaOS-2 were surveyed by RT-PCR using primers
specific to the 5'UTRs of each promoter, along with primers specific to
coding sequences (see Materials and Methods for details).
Amplification products were obtained with primers specific to coding
sequence and P2- and P3-specific transcripts in all cases, whereas
P1-specific products were detected only in kidney (Fig. 1B
). These data
show that the PTHR gene is expressed in HOS and SaOS-2 cells only from
the P2 and P3 promoters.

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Figure 1. Expression of PTHR promoters in HOS and SaOS-2
cells. A, Structure of the 5' regulatory region of the human PTHR gene.
The P1, P2, and P3 promoters are shown, along with exons and splice
patterns up to E1. The regions encompassed by PTHR promoter-luciferase
recombinants tested in Fig. 2 are indicated by open
bars. B, RT-PCR analysis of promoters driving expression of the
endogenous PTHR gene in kidney, and in HOS and SaOS-2 cells using PCR
primers complementary to 5'UTR sequences specific to each promoter. PCR
reactions were electrophoresed on a 1% agarose gel, and amplification
products were analyzed by Southern blotting using
32P-labeled internal oligonucleotides (see Materials
and Methods for details). PCR amplification was performed in
the absence (-), or presence (+) of RT reactions.
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Analysis of the activity of PTHR promoter-luciferase recombinants
in transiently and stably transfected HOS and SaOS-2 cells
P1 activity is restricted to kidney, whereas P2- and P3-specific
transcripts are widely expressed. We were interested in determining
whether cell-specific expression from the three promoters could be
recapitulated by transfection into HOS and SaOS-2 cells. Therefore,
PTHR promoter-luciferase recombinants were constructed (Fig. 2A
) by inserting fragments from P1, P2,
and P3 promoter regions upstream of the promoter-less luciferase gene
in the EBV episomal vector p220.2 (30; and see below). Transient
transfection of these recombinants gave rise to significant levels of
luciferase activity expressed from pP2954-220.2
and pP3842-220.2, whereas
pP11428-220.2 stimulated lower levels of
expression in both HOS and SaOS-2 cells (Fig. 2B
).

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Figure 2. Analysis of expression of PTHR promoter luciferase
recombinants in transiently transfected HOS and SaOS-2 cells. A, PTHR
promoter-luciferase recombinants tested in these studies. Only the
promoter-luciferase portion of the vector is illustrated. B, Expression
of PTHR promoters in transiently transfected HOS and SaOS-2 cells.
Relative luciferase activities (±SEM) obtained from three
to five independent sets of transfections are presented. Values were
normalized to expression driven by P3, which was given a value of
100%.
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Recent experiments have suggested that activators of transcription
function in part by recruiting factors to transcriptional preinitiation
complexes that act to remodel chromatin structure (22, 23, 24, 25).
Preinitiation complex formation on active templates in transiently
transfected cells may not require remodeling of chromatin structure
(26), and, therefore, may not be fully representative of
transcriptional initiation on endogenous genes. We were interested in
analyzing the function in stably transfected cells of the PTHR promoter
luciferase recombinants studied in Fig. 2
. Episomal vectors have been
shown to be propagated in the form of nucleosomes (27). We have
successfully used the EBV episomal vector p220.2 (30) and its
derivatives to stably transfect human cell lines (29, 32). Therefore,
HOS and SaOS-2 cells were transfected with
pP11428-220.2,
pP2954-220.2, or
pP3842-220.2 to test for PTHR promoter function,
or the promoterless pXP2220.2 as a negative control.
Hygromycin-resistant cell lines were selected, and tested for
expression levels of episomal plasmids by Hirt extraction (see
Materials and Methods for details). Southern analysis of
Hirt extracts of HOS cell lines showed that vector copy numbers were
similar, with the exception of pP2954-220.2,
which was propagated at somewhat lower levels than the other plasmids
(Fig. 3A
). Plasmid levels were more
variable in SaOS-2 cells, with pP11428-220.2 and
pP2954-220.2 being propagated at the highest and
lowest copy numbers, respectively.

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Figure 3. Analysis of expression of PTHR promoter-luciferase
recombinants in stably transfected HOS and SaOS-2 cells. A, Expression
levels of episomal plasmids in HOS and SaOS-2 cells. Plasmid DNA was
isolated by Hirt extraction of extracts of HOS and SaOS-2 cells stably
transfected with promoter-luciferase recombinants shown in Fig. 2A .
Plasmid DNA was purified from aliquots of extract, normalized for
protein concentration (see Materials and Methods),
digested with BamHI and SalI to excise
PTHR promoter-luciferase fragments, and subjected to agarose gel
electrophoresis and Southern blotting (see Materials and Methods for
details). B, Luciferase activity (±SEM) expressed in
stably transfected HOS and SaOS-2 cells. Activity was normalized
according to the relative copy numbers of episomal plasmids analyzed in
A. Results are from four independent sets of luciferase assays.
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Analysis of luciferase expression in the HOS and SaOS-2 lines gave
similar results. Low levels of P1 activity observed in transient
transfections was completely abolished in both SaOS-2 and HOS cells
(Fig. 3B
), whereas lines propagating P2 and P3 promoter sequences
expressed luciferase activity. Thus, these experiments reproduce the
pattern of promoter activities observed in the endogenous PTHR gene
these cells, and show that the P2 and P3 regions used are sufficient to
drive promoter activity in stably transfected cells.
Deletion analysis of the P2 promoter
Exonuclease III deletion analyses were performed to define the
regions of P2 that contribute to promoter activity observed in HOS and
SaOS-2 cells (Fig. 4A
). Truncated
P2-luciferase fragments were inserted upstream of the luciferase gene
in pLuc-EBV. Stable HOS cell lines propagating each of the recombinants
listed in Fig. 4A
were selected as described above and analyzed by Hirt
extraction for expression levels of plasmids (Fig. 4B
). While relative
levels of plasmids detected fluctuated somewhat from one extraction to
the next, the results showed that the truncated P2-luciferase plasmids
were propagated at similar copy numbers (Fig. 4B
, and data not
shown).

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Figure 4. Deletion analysis of the P2 promoter region of the
PTHR gene. A, Truncated P2 promoter recombinants generated by
exonuclease III digestion (see Materials and Methods for
details). B, Southern blotting analysis of expression levels of P2
promoter recombinants stably expressed in HOS cells. DNA extraction and
Southern blotting were performed as in Fig. 3 . C, Analysis of
luciferase activity (four experiments) in extracts of HOS cells stably
expressing truncated P2 promoter recombinants. D, Analysis of
luciferase activity (±SEM) in extracts of HOS cells
transiently transfected with the recombinants listed in A. Results of
four independent experiments are shown. E, Activity of P2
promoter-luciferase recombinants in transiently transfected SaOS-2
cells. SaOS-2 cells were transiently transfected with P2 promoter
recombinants and extracts of cells were assayed for luciferase activity
(±SEM; 3 independent sets of experiments). F, Sequence of
the proximal P2 promoter region. The 5' extremities of deletions in
this region are indicated by bent arrows. The
transcription initiation site is indicated by an
arrowhead.
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Analyses of luciferase activities showed that deletion of P2 sequences
from -954 to -91 had little effect on P2 promoter activity (Fig. 4C
).
However, deletion from -91 to -12 largely abolished luciferase
expression, indicating that sequences within region are of primary
importance for promoter activity. Similar results were obtained in
transiently transfected cells. However, a gradual loss of luciferase
activity of approximately 2-fold was observed in transiently
transfected HOS and SaOS-2 cells with successive deletions (Fig. 4
, D
and E). The importance of the -91 to -12 region was
underlined by transient transfections in SaOS-2 cells (Fig. 4E
), where deletion beyond -91 largely abolished promoter activity.
These results indicate that a 79-bp region upstream of P2 is required
for promoter activity (Fig. 4F
). Moreover, the results suggest that
region lying between -959 and -91 lacks sequences required for basal
P2 activity in osteoblast-like cells.
Identification of a promoter-specific repressor sequence in the
proximal P3 promoter
A similar deletion analysis to that presented in Fig. 4
was
performed on the P3 promoter (Fig. 5A
).
Truncated P3- luciferase recombinants were inserted in pLuc-EBV and
stably transfected in HOS cells. Southern analysis of Hirt
extracts showed that plasmids were propagated at similar copy numbers
(Fig. 5B
). Analysis of luciferase expression showed that deletion of
sequences from -842 to -147 had no significant effect on promoter
activity in stably transfected HOS cells (Fig. 5C
). This suggested that
no regulatory elements important for P3 activity lie in this region.
Results from transient transfections of HOS cells largely agreed with
these findings (Fig. 5D
). However, there was a progressive loss of over
2-fold in luciferase activity observed with successive deletions
from -842 to -147, which was not observed in stably transfected
cells. A similar phenomenon was seen when recombinants were transiently
transfected in SaOS-2 cells (Fig. 5E
).

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Figure 5. Deletion analysis of the P3 promoter region of the
PTHR gene. A, Truncated P3 promoter recombinants generated by
exonuclease III digestion (see Materials and Methods for
details). B, Southern blotting analysis of expression levels of P3
promoter recombinants stably expressed in HOS cells. DNA extraction and
Southern blotting were performed as in Fig. 3 . C, Analysis of
luciferase activity (±SEM; four experiments) in extracts
of HOS cells stably expressing truncated P3 promoter recombinants. D,
Analysis of luciferase activity in extracts of HOS cells transiently
transfected with the recombinants listed in A. Results of four
independent experiments (±SEM) are shown. E, Activity of
P3 promoter-luciferase recombinants in transiently transfected SaOS-2
cells. SaOS-2 cells were transiently transfected with P3 promoter
recombinants and extracts of cells were assayed for luciferase activity
(± SEM; three independent sets of experiments).
|
|
Deletion of an ARR from -147 to -115 led to a 2- to 2.5-fold increase
in luciferase activity, suggesting that this region can act as a
repressor. This was observed both in stably transfected HOS cells and
in transiently transfected HOS and SaOS-2 cells (Fig. 5
, CE). EMSAs
showed that the ARR sequence (Fig. 6A
)
bound a series of factors. Three complexes, designated 1 to 3, were
identified (Fig. 6B
; arrowheads), and binding of complexes 1
and 2 to the ARR was competed by a 100-fold excess of unlabeled ARR
oligonucleotide, but not a nonspecific oligonucleotide, providing
evidence for specific factor(s) that recognize the ARR (Fig. 6B
, lanes
35). Further analysis with a series of mutated ARR sequences (Fig. 6A
) suggested that a string of A residues was important for formation
of complexes 1 and 2, but not complex 3 (Fig. 6B
, lanes 623).
Complexes 1 and 2 were formed on mut1 and mut2 oligonucleotides, but
not on the mut 3 oligonucleotide (Fig. 6B
, lanes 7, 13, and 19).
Similarly, unlike wild-type, mut1 and mut2 oligonucleotides, a 100-fold
excess of mut3 sequences failed to completely compete for formation of
complexes 1 and 2 on mut1 and mut2 (Fig. 6B
, lanes 811 and
1417).

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Figure 6. Electrophoretic mobility shift assay of factors
binding to an ARR oligonucleotide in nuclear extracts of HOS cells. A,
The sequence of the ARR oligonucleotide is indicated, along with a
series of three mutated ARR sequences. Competition experiments were
performed with the ARR and mutated oligonucleotides (lanes 3, 4) or
with a nonspecific oligonucleotide with the sequence
5'-GTAAAACGACGGCCAGT-3' (lane 5). Binding and competition experiments
were also performed on mutated ARR sequences mut1 (lanes 611), mut2
(lanes 1217) or mut3 (lanes 1823) as indicated.
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|
Function of the ARR was further analyzed by subcloning it upstream of
P2, which is also (G+C)-rich, and upstream of a truncated Herpes
Simplex virus thymidine kinase (tk) promoter (Fig. 7A
). The tk promoter is not (G+C)-rich
and displays significant basal activity in a wide variety of
transfected cells. As a control the ARR was reinserted upstream of a P3
promoter truncated at -115 (Fig. 7A
). The ARR significantly repressed
activity of P2 and P3 promoters (Fig. 7B
). Surprisingly, however, the
ARR stimulated activity of the basal tk promoter approximately 2-fold
(Fig. 7C
), suggesting that its function depends on promoter
context.

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Figure 7. Analysis of the function of an ARR of P3 lying
between -147 and -115. A, Schematic representation of recombinants
containing ARR oligonucleotides inserted upstream of P2-, P3- or
tk-luciferase recombinants. BD, Results of six independent transient
transfection experiments with P3- (B), P2- (C) and tk-luciferase
recombinants (D) in HOS cells. Values were analyzed using a Students
t test. Significant repression or activation
(P < 0.01) is indicated by an
asterisk.
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Identification of downstream initiation sites and a functional SP1
site in the proximal P3 promoter
Unexpectedly, deletion from -115 to +42 of P3 only reduced
luciferase activity in HOS and SaOS-2 cells to 3040% of that
observed with the pP3842-220.2 construct,
suggesting the existence of additional start-sites downstream of +42
(Fig. 5
, CE). Therefore, we performed primer extension analysis using
a primer that hybridizes within the U4 exon (see Materials and
Methods for details). The upstream primer generated a pair of
major extension products of 140 and 147 bases on RNA from both kidney
and HOS cells (Fig. 8A
), in excellent
agreement with previous results obtained with kidney RNA (21). In
addition, extension products of 38 and 28 bases were detected, which
lie approximately 109 and 119 bases downstream of the site (+1)
corresponding to the 147-base band, and are consistent with residual
activity in promoter fragments deleted to +42 (see Fig. 9A
for summary).

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Figure 8. Analysis of downstream P3 promoter initiation
sites by primer extension. A, Results of primer extension analysis of a
transfer RNA control (10 µg) and RNA purified from human adult kidney
(10 µg) and HOS cells (50 µg) using a primer whose 5' end lies 61
bp upstream of the U4/SS junction. Major extension products of 28, 38,
140, and 147b are indicated. Note that the relative intensities of
extension products does not necessarily reflect relative initiation
site usage in vivo as longer products are extended less
efficiently that shorter ones.
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Figure 9. Fine deletion analysis of the P3 promoter
downstream of -115. A, Proximal sequence of the P3 promoter downstream
of -147. Positions of 5' promoter deletions are indicated by
bent arrows, and transcription initiation sites by
arrowheads. The positions of consensus sequences for
Sp1, MAZ, and ETF classes of transcription factors are indicated. The
ARR between -147 and -115 of the P3 promoter is indicated in
bold. B and C, Analysis of luciferase activity
(±SEM; four experiments) in extracts of HOS cells
transiently expressing P3 promoter recombinants truncated downstream of
-115.
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|
The region of P3 downstream of -115 was examined in more detail for
regulatory elements. A series of finer deletions were made between
-115 and +58 (Fig. 9A
), and function of these sequences was examined
in transiently transfected HOS cells. Serial deletion of P3 sequences
produced a gradual loss of reporter gene expression (Fig. 9
, B and C)
to 20% of that observed with the -115 recombinant. A similar gradual
loss of activity has been seen in other CpG island promoters (33). The
most significant drops in activity were observed upon deletion from
-27 to +16, the region containing the upstream initiation sites, and
from -115 to -83. This region contains a consensus MAZ site and a
series of Sp1 sites. The role of these sites in P3 function was further
investigated by EMSA of oligonucleotides derived from the -115 to -83
region with HOS cell nuclear extracts (Fig. 10
). These studies provided evidence
for binding of Sp1, but not MAZ to this region. Competition experiments
with the wild-type -115 to -83 sequence (Fig. 10A
), selectively
inhibited formation of a complex of low mobility (Fig. 10B
, lanes
24). This complex was similarly disrupted with an oligonucleotide
containing mutations in the MAZ consensus sequence, but not with
sequences mutated in the consensus Sp1 site (Fig. 10B
, lanes 58). The
presence of Sp1 in the slow migrating complex was supported by addition
of an anti-Sp1 antibody, which blocked its formation (Fig. 10C
, lanes 1
and 2). EMSA with the oligonucleotide containing a mutated MAZ sequence
gave results essentially identical to those obtained with the wild-type
oligonucleotide (Fig. 10C
, lane 3). Taken together these data provide
evidence for binding of Sp1, but not MAZ, to the -115 to -83 region
in HOS cell extracts, and suggest that Sp1 is important for controlling
activity of the P3 promoter in HOS cells. Note also that no significant
loss in residual promoter activity was observed by deletion of
overlapping MAZ sites lying between +42 and +58 (Fig. 9B
), consistent
with a lack of function of MAZ sites in HOS cells.

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Figure 10. EMSA of P3 promoter sequences -115 to -83 with
extracts of HOS cells. A, Sequences of oligonucleotides used in these
experiments containing either the wild-type sequence, or sequences
containing point mutations in the consensus MAZ or Sp1 motifs. B, EMSA
performed with nuclear extracts of HOS cells. Competition experiments
were performed with excess unlabeled wild-type, MAZ mutant, or Sp1
mutant oligonucleotides as indicated. C, EMSA as in B performed with
the wild-type sequence in the absence (lane 1) or presence (lane 2) of
an anti-Sp1 antibody, or with the oligonucleotide containing the
mutated MAZ motif (lane 3).
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|
In conclusion, these studies have analyzed a region of approximately 2
kb of the human PTHR gene extending from 954 bp upstream of P2 to 250
bp downstream of P3 and have shown that sequences proximal to P2 and P3
are sufficient for promoter activity. The constructs used in the
experiments presented did not include a 60-bp region of U3 that lies
between the P2 and P3 recombinants tested here. Note, however, that an
extended construct containing 1.8 kb of continuous P2 and P3 promoter
sequence did not provide any evidence for enhancer sequences lying
within U3 (data not shown). Thus, apart from the proximal promoter
sequences defined above, our data do not provide any evidence for the
existence of autonomously acting enhancer sequences lying between 954
upstream of P2 and 250 bp downstream of P3.
 |
Discussion
|
|---|
Stable transfection of human PTHR promoter-luciferase reporter
plasmids in human osteoblast-like cells HOS and SaOS-2 recapitulated
the pattern of activity of endogenous PTHR gene promoters. RT/PCR
analyses showed that the widely expressed P2 and P3 promoters, but not
the kidney-specific P1 promoter, were active in these cells (Fig. 1
).
Similarly, HOS and SaOS-2 lines propagating the P2- or P3-reporters
expressed luciferase activity, whereas luciferase reporter plasmid
carrying 1.6 kb of the P1 promoter was not functional in these cells
(Fig. 3
). Deletion analysis of the P2 and P3 promoters showed that
proximal sequences within approximately 100 bp of transcription start
sites were sufficient for expression of luciferase activity in stably
transfected cells (
Figs. 47


). No evidence was found for the action of
elements lying between -91 and -954 of P2, or -115 and -842 of P3
in stimulation of promoter activity in stably transfected HOS cells
propagated in normal serum (
Figs. 47


).
The results of transient transfection studies with promoter deletion
constructs were generally in agreement with those obtained in stably
transfected cells. However, we observed a gradual loss of luciferase
expression with successive 5' deletions of P3, and to a lesser degree
with P2, in transiently transfected HOS and SaOS-2 cells. This suggests
that the apparent contribution of distal sequences to promoter function
in transiently transfected cells could arise through the nonspecific
activity of transcription factors binding to naked, but not
nucleosomal, DNA. As yet, few promoter sequences have been studied in
this manner. These results raise the possibility that contributions to
promoter activity of some putative promoter elements identified in
transient transfection studies may not be significant in stably
transfected cells.
Comparison of the sequences of P2 and P3 between -100 and +75 shows a
remarkable similarity of organization (Figs. 4
and 8
). Both proximal
promoter regions contain Sp1 sites along with sequence motifs
recognized by the ETF family of transcriptional regulators (34, 35, 36),
and the myc-associated zinc finger protein, MAZ (37, 38). Sp1 was found
to be important for function of the proximal P3 promoter in HOS cells
(Figs. 8
and 9
), whereas no evidence was found for significant function
of the adjacent MAZ sequence or the ETF motif in these cells. However,
it is possible that these sequences may be important for function in
other cell types. Combinations of Sp1 and MAZ, or Sp1 and ETF have been
found to be required for function of a number of TATA-less G+C-rich
promoters required for the expression of genes encoding proteins of
diverse biological function. For example, ETF and Sp1 sites have been
found in the widely expressed genes encoding L-isoaspartyl
methyltransferase (34), and human perlecan, which encodes a large
basement membrane proteoglycan (35). MAZ has been shown to interact
with the TATA-less promoters of genes encoding the serotonin 1a
receptor (37), and the T-cell glycoprotein CD4 (38), as well as the
TATA-containing promoters of the c-myc and insulin genes
(39, 40, 41). The presence of these elements in the P2 and P3 promoters of
the human PTHR gene would be consistent with the broad expression
patterns of P2- and P3-specific transcripts.
While P2 and P3 share many characteristics, there are distinct
functional differences between the two sequences. P3 is an unusual
regulatory region as it has characteristics of both tissue specific and
housekeeping promoters. P3-specific transcripts are widely although not
ubiquitously expressed in the adult (21). The promoter is moderately
active in most adult tissues and cell lines tested, but highly active
in kidney. This raises the possibility of a tissue-specific enhancer
driving elevated P3 activity in kidney. However, it is not clear in
which renal cell types P3 functions. Our previous studies in rodent
kidney have detected moderate levels of PTHR gene transcripts in
tubular epithelial cells and in glomerular podocytes, and high levels
in capillary endothelial cells and vascular smooth muscle (20). Most of
these transcripts were driven by P1, the major renal promoter in mouse
and rat, whereas moderate levels of P2-specific transcripts were
restricted to tubular epithelial cells. It is noteworthy that only
P2-specific transcripts were detected in the human renal epithelial
cell line HK2 (21), and other studies have shown that P3 functions
poorly in these cells in gene transfer experiments (data not
shown).
The other striking difference between the two promoters lies in their
different patterns of expression during development. P2-specific
transcripts were detected in all tissues tested between 12 and 19 weeks
fetal age of development, whereas P3 was inactive at this stage of
gestation (21). This is an important stage of organ development and
skeletal ossification (42). The apparent absence of P3 function in
fetal osteoblasts is striking, given that P3-specific transcripts were
detected in both SaOS-2 and HOS osteoblast-like osteosarcoma cell
lines. This suggests that the late onset of P3 function requires either
the expression of specific activator(s) expressed late in development
or relief from repression. It is noteworthy in this regard that P2 and
P3 lie within the same CpG island (Fig. 1
). Generally, CpG island
promoters remain free of the de novo genomic methylation
that occurs at the pregastrula stage, and remain unmethylated
throughout development (43). Indeed, while P3 function can be repressed
in gene transfer experiments by methylation in vitro,
analysis of fetal genomic DNA samples has shown that P3 is unmethylated
at midgestation (44).
The observation that broadly expressed transcription factors such as
Sp1 control P3 function provides support for the notion that P3 may be
repressed in fetal tissues. Sp1 is expressed widely during development
and controls the activity of a number of housekeeping promoters
(45, 46, 47). The identification of a negative regulatory ARR lying between
-147 and -115 of P3 may provide a clue to the differential regulation
of P2 and P3 (Fig. 6
). It is possible that repressor(s) binding to this
element may act to block the action of widely expressed transcription
factors on the P3 promoter. EMSAs with HOS cell nuclear extracts
provided evidence for one or more factors interacting with the ARR
(Fig. 7
). The ARR also acts as a repressor when placed upstream of P2,
which, apart from the ARR, is similar in sequence and organization to
P3. Intriguingly, however, insertion of the ARR upstream of a truncated
thymidine kinase promoter gave rise to a 2-fold increase in reporter
gene expression, suggesting that function of the element in the context
of the endogenous gene may depend on other factors binding to promoter
sequences. These results also suggest that the ARR does not function
like other repressor sequences that recruit histone deacetylase
activity to promoters (48). If this were the case, the ARR would be
expected to function as a repressor independent of promoter context.
Moreover, it is unlikely that the A-rich nature of the sequence imparts
a change in structure to flanking DNA that is inhibitory to
transcription.
In summary, we have shown that sequences required for function of the
human PTHR gene P2 and P3 promoters in stably transfected human
osteoblast-like cells lie within approximately 100 bp of transcription
initiation sites, and have identified a downstream initiation site of
the P3 promoter. The proximal regions of P2 and P3 are similarly
organized, and contain consensus motifs for Sp1, MAZ, and ETF
transcription factors. However, the proximal region of P3 also contains
a repressor element, which may play a role in the complex developmental
regulation of P3.
 |
Footnotes
|
|---|
1 This work was supported by Operating Grants MT-12896 (to J.H.W.),
MT-5775 (to D.G.), MT-9315 (to G.N.H.), and a grant from the National
Cancer Institute (to D.G.). 
2 These authors should be considered as equal first authors. 
3 Recipient of a fellowship from the Royal Victoria Hospital
Research Institute. Present address: Department of Pediatrics, Chiba
University School of Medicine, Inohana, Chuo-ku, Chiba, Japan. 
4 Present address: Weizmann Institute of Science, 76100 Rehovot,
Israel. 
5 Chercheur-Boursier of the Fonds de la Recherche en Santé du
Québec. 
Received September 30, 1999.
 |
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M. Minagawa, T. Yasuda, T. Watanabe, K. Minamitani, Y. Takahashi, D. Goltzman, J. H. White, G. N. Hendy, and Y. Kohno
Association between AAAG Repeat Polymorphism in the P3 Promoter of the Human Parathyroid Hormone (PTH)/PTH-Related Peptide Receptor Gene and Adult Height, Urinary Pyridinoline Excretion, and Promoter Activity
J. Clin. Endocrinol. Metab.,
April 1, 2002;
87(4):
1791 - 1796.
[Abstract]
[Full Text]
[PDF]
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M. Minagawa, T. Watanabe, Y. Kohno, H. Mochizuki, G. N. Hendy, D. Goltzman, J. H. White, and T. Yasuda
Analysis of the P3 Promoter of the Human Parathyroid Hormone (PTH)/PTH-Related Peptide Receptor Gene in Pseudohypoparathyroidism Type 1b
J. Clin. Endocrinol. Metab.,
March 1, 2001;
86(3):
1394 - 1397.
[Abstract]
[Full Text]
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