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Endocrinology Vol. 142, No. 1 49-58
Copyright © 2001 by The Endocrine Society


ARTICLES

Yin Yang 1 Protein Negatively Regulates High-Density Lipoprotein Receptor Gene Transcription by Disrupting Binding of Sterol Regulatory Element Binding Protein to the Sterol Regulatory Element1

Wendy Shea-Eaton, Dayami Lopez and Mark P. McLean

Departments of Obstetrics and Gynecology and Biochemistry and Molecular Biology, University of South Florida, College of Medicine, Tampa, Florida 33606

Address all correspondence and requests for reprints to: Dr. Mark P. McLean, Departments of Obstetrics and Gynecology, 4 Columbia Drive, Room 529, Tampa, Florida 33606. E-mail: mmclean{at}com1.med.usf.edu


    Abstract
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
Because the high-density lipoprotein receptor (HDL-R) is a key element in cholesterol homeostasis and a potential therapeutic target for hypercholesterolemic drugs, an understanding of HDL-R regulation is essential. The sterol regulatory element (SRE) binding protein-1a (SREBP-1a) was shown to positively regulate HDL-R gene expression through two SREs. SREBP-1a requires the presence of a coactivator like simian-virus-40-protein-1 (Sp1) to promote maximum activation of the HDL-R promoter. Negative regulatory factors are also known to play a role in cholesterol homeostasis, and the ubiquitous Yin Yang-1 zinc finger transcription factor (YY1) has been shown to repress several sterol-responsive gene promoters. A search of the rat HDL-R promoter revealed two putative YY1 binding sites (distal, -1329 to -1321; proximal, -1211 to -1203). Upon removal of both YY1 binding sites, YY1 was unable to repress HDL-R activation under basal (unstimulated) promoter conditions. However, YY1 was still an efficient transcriptional repressor for SREBP-1a-induced activation. YY1 was able to attenuate the transcriptional synergy caused by the combined actions of SREBP-1a and Sp1. Two-hybrid studies confirmed that YY1 bound with high affinity to SREBP-1a, and mobility shift assays demonstrated that YY1 could disrupt SREBP-1a binding to both SREs. The molecular consequence of YY1 intervention seems to override any positive interactions between Sp-1 and SREBP-1a and results in the disruption of SREBP-1a binding to the SREs in the HDL-R promoter.


    Introduction
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
THE LEVEL OF high-density lipoprotein (HDL) cholesterol circulating in the plasma has been shown to have an inverse relationship with the incidence of atherosclerosis and coronary heart disease (1). This protective effect is related to the ability of an HDL particle to transport excess cholesterol from cells in the arterial wall to the liver for disposal as bile acid (reverse cholesterol transport) (2, 3). In addition, HDL has been shown to provide cholesterol to nonplacental steroidogenic tissues (such as the adrenal, ovary, and testis) for steroid hormone synthesis (4, 5). HDL-cholesterol uptake into cells (primarily in the form of cholesteryl esters) involves the recently identified HDL receptor (HDL-R), or scavenger receptor class B type I (SR-BI) (6, 7, 8, 9, 10). Apolipoproteins A-I and A-II (the protein components of HDL) are then released back into the extracellular fluid after the cholesterol moiety has been deposited in the cell, and HDL is available to participate in the transportation of additional cholesterol molecules (11, 12, 13, 14). Because HDL-R has been shown to be essential in cholesterol homeostasis (6, 7, 8, 9, 10, 11, 12), and because the HDL-R may have potential as a target for hypercholesterolemic drugs (15, 16), elucidating the molecular mechanisms involved in its regulation is crucial.

Cholesterol homeostasis in rat luteal cells is regulated through an intricate feedback mechanism that can detect the amount and availability of cellular cholesterol (17). Decreased cholesterol availability results in the specific proteolysis of the precursor form of the sterol regulatory element (SRE) binding protein (SREBP) from the endoplasmic reticulum and the subsequent translocation of the smaller mature NH2-terminal segment to the nucleus, where it can bind to SREs and eventually cause activation of the genes involved with cholesterol uptake and biosynthesis (18, 19). Results of earlier studies in our laboratory (20) found that the rat HDL-R promoter contains two SREs through which SREBP-1a is able to activate transcription. SREBP proteins are inefficient activators by themselves and require additional coregulatory factors for maximum transcription. For the human fatty acid synthase promoter and the low-density lipoprotein receptor (LDL-R), simian-virus-40-protein-1 (Sp1) has been found to be the coactivator for SREBP-1a (21, 22). Nuclear factor Y and SREBP-1a have been shown to cause synergistic activation of the rat farnesyl diphosphate synthase gene (23).

The multifaceted Yin Yang-1 zinc finger transcription factor (YY1) has been shown to be capable of both positive and negative regulation of transcription (24, 25, 26, 27, 28, 29). In a recent study, YY1 was shown to bind to the 3-hydroxy-3-methylglutaryl coenzyme A (HMG-CoA) synthase, farnesyl diphosphate synthase, and LDL-R promoters and result in the displacement of nuclear factor Y (30). In an additional study using the LDL-R promoter, YY1 was able to repress the LDL-R promoter by disruption of SREBP-1a- and Sp1-positive stimulation (31).

In the current studies, we proposed to determine whether YY1 could inhibit transcription of the rat HDL-R promoter and to investigate whether this repression was the result of cis-acting factors, protein-protein interactions, or a combination of both mechanisms. For these experiments, electrophoretic mobility shift assays (EMSAs), the Mammalian Two-hybrid system, and luciferase reporter constructs were used to investigate activation of the rat HDL-R promoter. These studies investigate the importance of the Sp1/SREBP-1a interactions in HDL-R gene regulation and demonstrate the ability of YY1 to disrupt SREBP-1a binding in the presence or absence of Sp1, with subsequent attenuation of HDL-R promoter activity.


    Materials and Methods
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
Materials
All oligonucleotides and primers were synthesized by Integrated DNA Technologies, Inc. (Coralville, IA). The pGL3 basic luciferase vector, renilla luciferase vector, all restriction and modifying enzymes, Passive Lysis Buffer, T4 polynucleotide kinase, Mammalian Two-hybrid System, and the Dual Luciferase Reporter Assay System were obtained from Promega Corp. (Madison, WI). Fugene 6 transfection reagent was purchased from Roche Molecular Biochemicals (Indianapolis, IN). The human bladder HTB-9 cell line was obtained from ATCC (Rockville, MD); Drosophila SL2 cells and the plasmid pPacSp1 that contains the Drosophila actin 5C promoter upstream of the coding sequence for human Sp1 were a gift from Al Courey (Department of Chemistry and Biochemistry, University of California at Los Angeles). Additional pPac vectors, used in transfection studies, and Drosophila SL2 cells were obtained as part of the Drosophila Expression System from Invitrogen (Carlsbad, CA). The NH2-terminal segment (active fragment) of SREBP-1a under the control of the cytomegalovirus (CMV) promoter (SREBP-1a-pCMV5) was kindly provided by Dr. Tim Osborne (Department of Molecular Biology and Biochemistry, University of California, Irvine, CA). The GST-YY1 and pCMV-YY1 expression plasmids were a gift from Thomas Shenk (Department of Molecular Biology, Princeton University, Princeton, NJ). [{gamma}32P]-adenosine 5'-triphosphate (6000 Ci/mmol) was obtained from DuPont/NEN Life Science Products (Wilmington, DE). DMEM:nutrient mixture F-12 (DMEM/F12) was obtained from Life Technologies, Inc./BRL (Grand Island, NY). FBS was purchased from Summit Biotechnology (Ft. Collins, CO). Polydeoxyinosinic-deoxycytidylic acid was obtained from Pharmacia Biotech (Piscataway, NJ). BioMax-MR films were obtained from Fisher Scientific (Norcross, GA). The rabbit polyclonal anti-SREBP-1 and the horseradish peroxidase-conjugated goat antirabbit antibodies were purchased from Santa Cruz Biotechnology, Inc. (Santa Cruz, CA). The YY1 Nushift Plus Kit containing K562 cell nuclear extract, YY1 specific oligonucleotides, and specific YY1 supershift antibody was obtained from Geneka Biotechnology Inc. (Montréal, Québec, Canada). The SuperSignal ULTRA Chemiluminescent Substrate was obtained from Pierce Chemical Co. (Rockford, IL). Nitrocellulose membrane was obtained from Schleicher & Schuell, Inc. (Keene, NH). All other chemicals were purchased from Fisher Scientific or Sigma (St. Louis, MO).

GST-fusion protein production
Glutathione S-transferase-YY1 or -Sp1 fusion proteins or histidine-tagged SREBP-1a proteins were over expressed in Escherichia coli by induction of midlogarithmic-phase cultures with 1 mM isopropyl-ß-D-thiogalactopyranoside. After incubating for 6 h at 27 C, cells were sedimented by centrifuging at 7,700 x g for 10 min at 4 C. For GST-protein purification, the cell pellet was resuspended in PBS and sonicated using a Sonic Dimembrator 60 (Fisher Scientific) with a 1/4-inch tip, at full strength, in 10-sec bursts, until cells were lysed. Triton X-100 was then added to a final concentration of 1%, and the sample was incubated for 30 min at 4 C. The suspension was centrifuged at 12,000 x g for 10 min at 4 C. Affinity purification of the fusion protein was performed using the GST-fusion Purification Kit (Pharmacia Biotech) as per the manufacturer’s recommendations. Briefly, cleared lysate was passed through the glutathione Sepharose 4B column. After washing with PBS, the fusion protein was digested with thrombin (YY1) or precision (Sp1) protease to remove the GST moiety and was used in gel mobility shift assays. For histidine-tagged SREBP-1a protein purification, the cell pellet, after the initial centrifugation, was resuspended in guanidium lysis buffer provided in the XPRESS System (Invitrogen) and eventually eluted off an immobilized metal affinity column according to the manufacturer’s recommendations. Recombinant protein samples were concentrated approximately 4- to 6-fold using Centricon-10 concentrators (Millipore Corp., Bedford MA). Protein concentrations were determined using the Bio-Rad Laboratories, Inc. protein assay (Bio-Rad Laboratories, Inc., Hercules, CA).

Mammalian two-hybrid assay
The pBIND and pACT plasmids used in these assays were provided by the Mammalian Two-Hybrid System (Promega Corp.). The plasmid pSREBP-1a-pACT was constructed using full-length human SREBP-1a complementary DNA inserted into the EcoRI and KpnI sites. To construct the YY1-pBIND plasmid, the full-length mouse YY1 complementary DNA was inserted into the XbaI and ScaI/EcoRV sites. To examine luciferase activities, HTB9 cells were cotransfected with the pG5-luciferase vector, either in the presence or absence of pSREBP-1a-BIND or pYY1-ACT. For these experiments, transfections were performed on 3 x 106 HTB9 cells/well with 2 µg of each plasmid using the Fugene 6 transfection method according to the manufacturer’s instructions. After transfection, cells were incubated for 48 h at 37 C before harvesting. Transfection efficiencies were corrected using renilla activity expressed by the pBIND plasmid.

Plasmids for luciferase assays
All HDL-R promoter-luciferase gene constructs were derivatives of the pGL3-basic luciferase vector and used for transfections involving mammalian cells or insect cells. Standard molecular biology techniques were used for preparation of nested deletions, PCR and cloning procedures to generate the entire HDL-R promoter or subsequent deletion constructs were described in detail elsewhere (20).

Cell transfections
For mammalian cell transfections, HTB9 cells were transfected with the specified HDL receptor promoter-luciferase reporter gene construct, either in the presence or absence of SREBP-1a-pCMV5 or YY1-pCMV5, using Fugene 6 according to the manufacturer’s specifications. Cells were first plated out in 6-well (3 x 106 cells per well) or 12-well (7.5 x 104 cells per well) tissue culture plates and incubated for 24 h at 37 C (5% CO2). Fresh DMEM/F12 medium + 10% FBS was added 2 h before transfections. Forty-eight hours after transfection, the cells were washed twice with PBS, treated with Passive Lysis Buffer for 20 min, and then scraped with a rubber policeman. Lysates were transferred to a microcentrifuge tube and stored at -80 C until determination of luciferase activity was performed. Cotransfection of a plasmid, containing the renilla luciferase gene under control of the SV40 early enhancer/promoter region, was used as a control to correct for differences in transfection efficiencies. For Drosophila transfections, Drosophila SL2 cells were transfected with the specified HDL receptor promoter-luciferase reporter gene construct, either in the presence or absence of SREBP-1a-pPac, Sp1-pPac, or YY1-pPac, using Fugene 6 according to the manufacturer’s specifications. Cells were plated out at a density of 3 x 106 cells per 6-well plate and incubated for 24 h at 37 C (5% CO2) before transfection. The cells were transfected using Fugene 6; and after 48 h, the cells were pelleted by centrifugation and treated with Passive Lysis Buffer and processed as listed above.

Luciferase assays
Luciferase assays were performed using the Dual Luciferase Reporter Assay System according to the manufacturer’s instructions (Promega Corp.). Briefly, 100 µl luciferase substrate was added to 20 µl lysate, and luciferase activity was measured using a 20/20 luminometer (Turner Designs, Sunnyvale, CA).

Gel mobility shift assay
Complementary oligonucleotides corresponding to the HDL receptor promoter regions from -1966 to -1940 [distal SRE (dSRE): 5'-CTGCCCCCCTCACACCCTCCTCTGTAG-3'] and from -246 to -220 [plasmid SRE (pSRE): 5'-CCATCAGAGCACCGCCCACTCCCCGCC-3'], or -1335 to -1312 (distal YY1 BS1 binding site: 5'CTGCTGAGCCATCTCTCCAGCCCT-3') and -1217 to -1194 (proximal YY1 BS2: 5'- ACTCTGGGTCATGTTGCTGAAGGT) were synthesized and annealed in 10 mM Tris-HCl (pH 7.5), 1 mM EDTA, 25 mM NaCl, 10 mM MgCl2, and 1 mM dithiothreitol. A control oligo containing a consensus YY1 binding site (5'-GGGGATCAGGGTCTCCATTTTGAAGCGGGATCTCCC-3') was provided with the Nushift Kit. The oligonucleotide probe was then labeled using polynucleotide kinase and [{gamma}32P]-adenosine 5'-triphosphate (6000 Ci/mmol). To determine binding specificity, the appropriate unlabeled double-stranded oligonucleotides were used as competitors. Five micrograms of nuclear proteins (or 500 ng each of recombinant protein unless otherwise indicated) were incubated, either in the presence or absence of competitor, for 30 min at room temperature in binding buffer [12 mM HEPES (pH 7.9), 12% glycerol, 60 mM KCl, 1 mM EDTA, 1 mM dithiothreitol, and 4 mM Tris-HCl (pH 8.0)], 2 µg polydeoxyinosinic-deoxycytidylic acid, and 1 µg BSA. After incubation, 50,000–100,000 cpm of the radiolabeled probe was added, and the mixture was incubated for 20 min at 15 C. To demonstrate a supershift, antibody was added after incubation with the labeled probe, and the incubation was continued for 15 min at room temperature. The DNA-protein complexes were resolved on a 4% nondenaturing acrylamide gel at 4 C in 1x Tris-borate buffer (TBE, 0.05 M Tris, 0.05 M boric acid, and 0.001 M EDTA). Gels were then vacuum-dried and exposed to Bio-Max-MR films at -80 C for 12–24 h or developed using a Cyclone Storage Phosphor System (Packard Instrument Co., Meriden, CT).

Western blot analysis
After electrophoresis, under EMSA conditions, one unlabeled EMSA gel was electroblotted onto nitrocellulose membranes (0.2-µm pore) in buffer containing 0.25 M Tris hydrochloride (Tris-HCl) (pH 8.3) and 1.92 M glycine and 20% methanol at 4 C overnight using 200 mA. Western blot analysis of YY1 protein was carried out with a 1:1000 dilution of the rabbit polyclonal antiserum to YY1 (Santa Cruz Biotechnology, Inc.) in 3% milk. Immunoreactive proteins were then visualized using a 1:6000 dilution of horseradish peroxidase-conjugated goat antirabbit antisera (Santa Cruz Biotechnology, Inc.) in 3% milk and the SuperSignal ULTRA Chemiluminescent Substrate method.

Data analysis
Luciferase data were expressed as the mean ± SEM. Each luciferase assay experiment was performed in triplicate. Statistical significance was determined using the two-tailed ANOVA method followed by the Student-Newman Keuls multiple-comparison test when applicable (32). P < 0.05 was considered significant for all tests.


    Results
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
Using oligonucleotides corresponding to a control consensus YY1 binding site (Fig. 1AGo) or the distal YY1 binding site (BS1) found in the HDL-R promoter (Fig. 1BGo), EMSA was performed to ascertain whether YY1 protein could bind specifically to these sites. Nuclear extracts from K562 cells, a cell line expressing high levels of YY1 protein, were incubated with [{gamma}32P]-labeled oligonucleotides. The EMSA results demonstrate that YY1 bound specifically to both the control YY1 binding site and to the distal YY1 BS1 found in the HDL-R promoter. The specificity of the binding reaction was measured by incubation of the YY1 protein/DNA complex with YY1 antibody and resulted in the disappearance of the major protein/DNA complex, with the subsequent appearance of a supershifted band (lanes 4 and 8). Additional EMSA studies were performed with the proximal YY1 BS2 run on the same gel with similar results, although it was apparent that the distal YY1 BS1 bound YY1 protein with higher affinity than the proximal YY1 BS2 (data not shown).



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Figure 1. Characterization of YY1 DNA-protein interactions by EMSA. YY1 nuclear proteins (5 µg) extracted from K562 cells (K562NE) binding to (A) control [{gamma}32P]-labeled oligonucleotide containing a consensus YY1 binding site or (B) the [{gamma}32P]-labeled oligonucleotide containing the distal consensus YY1 binding site found in the rat HDL-R promoter. 50-fold excess unlabeled oligonucleotides were used as competitors, where indicated. The major YY1 DNA-protein complex formed is indicated, as well as the YY1 antibody (YY1ab) supershifted complex. These experiments were repeated twice, and a typical EMSA gel is shown.

 
To determine the effect of YY1 on HDL-R promoter activity, cotransfections with the YY1-pCMV expression vector were carried out in HTB9 cells (which lack significant levels of endogenous YY1 or SREBP-1a under the culture conditions used in this study), in the absence (Fig. 2AGo) or presence (Fig. 2BGo) of the SREBP-1a-pCMV5 expression vector. The basal luciferase activity under the control of the HDL-R promoter decreased significantly when YY1 concentrations of 300 ng or greater were used (Fig. 2AGo). In the presence of an equimolar ratio (500 ng each) of HDL-R promoter to SREBP-1a (Fig. 2BGo), the luciferase activity of the HDL-R promoter was stimulated 8-fold. Cotransfections of increasing amounts of YY1-pCMV had no significant inhibitory effects until concentrations of 150 ng or greater were used.



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Figure 2. YY1 represses basal (A) and SREBP-1a-induced (B) luciferase activity of the HDL-R promoter in a dose-dependent manner. HTB9 cells (7.5 x 104/well) were cotransfected with the p2267 promoter construct containing the entire HDL-R promoter (500 ng/well) in front of the luciferase gene, as described in Materials and Methods, and 500 ng pCMV5 plasmid expressing SREBP-1a (B) and/or YY1 protein [increasing YY1 DNA concentrations (nanograms) indicated on the ordinate]. Luciferase activity was measured in cell lysates 48 h after transfection. The data are from a typical experiment performed in triplicate. The fold inhibition of HDL-R promoter activity attributable to cotransfection of YY1 is listed in the box to the right of the graph (*, P < 0.05). This experiment was repeated twice.

 
To determine the location of specific binding sites involved in the YY1-induced negative regulatory process, nested deletions of the HDL-R promoter were prepared and cloned into the pGL3-Basic luciferase vector as described in Materials and Methods. These constructs were then transfected into HTB9 cells, in the presence or absence of SREBP-1a-pCMV5 expression vector. As shown in Fig. 3AGo, removal of both YY1 binding sites along with the dSRE (p-719) caused a reduction in basal luciferase activity (empty bars), when compared with basal activity in the full-length p2267 construct (52%), but did not have a noticeable effect on SREBP-1a-induced luciferase activity (hatched bars). SREBP-1a was still able to significantly stimulate HDL-R promoter luciferase activity in the absence of any known SRE, Sp1, or YY1 binding site (p-170, hatched bars, 6-fold), which could be attributable to binding of positive regulatory transcription factors like SREBP-1a to a single remaining E-box in this construct, as suggested by previous studies (20, 33). YY1 was still able to repress this SREBP-1a-induced activity in the p170 construct by 44%, suggesting that YY1 protein is able to function in the absence of any known YY1 binding sites.



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Figure 3. Effect of deletion of YY1 binding sites on YY1-repression of luciferase activity under the control of the HDL-R promoter. HDL-R constructs were prepared by deletion analysis as described in Materials and Methods. A, Effect of deletion of YY1 binding sites on YY1-repression of SREBP-1a-induced activation of the HDL-R promoter. HTB9 cells (3 x 106/well) were transfected with the indicated constructs (2 µg/well) in the presence or absence of pCMV5 expression vectors (2 µg each/well) for SREBP-1a and/or YY1. Luciferase activity was measured in cell lysates 48 h after transfection. The data are represented as relative luciferase units ± SEM from a typical experiment performed twice. The numbers in parentheses next to the YY1 bars represent the fold inhibition, compared with SREBP-1a-induced luciferase level. B and C, Deletion of YY1 binding sites attenuates the repression of luciferase activity in HDL-R promoter activity under basal conditions. HTB9 cells (7.5 x 104/well) were transfected with the p2267 (B) or the p719 construct (C) (500 ng/well) in the presence or absence of pCMV5 expression vectors (500 ng each/well) for SREBP-1a and/or YY1. Luciferase activity was measured in cell lysates 48 h after transfection. The data are from a typical experiment performed in triplicate. This experiment was repeated twice, and the data are represented as relative luciferase units ± SEM. *, Significant decrease in luciferase activity (P < 0.05) after addition of YY1 to the SREBP1a-induced HDL-R promoter luciferase value.

 
To further identify the importance of YY1 binding sites in the HDL-R promoter, another series of cotransfections studies were performed using the full-length p2267 promoter construct and the p719 deletion mutant that lacks both YY1 binding sites and the dSRE in the HDL-R promoter (Fig. 3Go, B and C). When both YY1 binding sites are present (Fig. 3BGo), YY1 represses both basal and SREBP-1a-induced HDL-R promoter luciferase activity by 30% and 80%, respectively. In the absence of YY1 binding sites (Fig. 3CGo), YY1 was unable to reduce basal promoter activity but was still capable of significantly inhibiting SREBP-1a-induced activation by 68%. This data suggested that the presence of YY1 binding sites did have a role in YY1-induced repression under basal conditions. However, these YY1 binding sites are not required for YY1-induced repression in the presence of exogenously added SREBP-1a, suggesting that, under these conditions, an additional repressive regulatory mechanism must be active.

Further EMSA studies were performed to characterize YY1 protein interaction with the SREBP-1a protein/DNA complex using the HDL-R dSRE (Fig. 4Go). Increasing concentrations of rYY1 were able to inhibit SREBP-1a/DNA complex formation in a dose-dependent manner. This was not attributable to a general inhibition of complex formation caused by the addition of small (nanogram) quantities of rYY1, because BSA was present in microgram amounts in each binding reaction as a nonspecific-blocking agent. In addition, there was no inhibition of SREBP-1a/DNA complex formation when increasing concentrations of recombinant Sp1 (rSp1) were added. The rYY1 inhibition of SREBP-1a binding to the dSRE was more efficient if rYY1 was incubated with rSREBP-1a protein before addition of the SRE. The YY1-induced inhibition was attenuated if rYY1 was added after SREBP-1a was bound to the SRE (data not shown). The binding pattern of rYY1 alone to the pSRE and dSRE of the HDL-R promoter was examined in a separate EMSA, and rYY1 was shown to have very low affinity for the SREs (data not shown).



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Figure 4. Recombinant YY1 inhibits SREBP-1a binding to the dSRE in the rat HDL-R promoter in a dose-dependent manner, as determined by EMSA. Increasing concentrations of recombinant YY1 were allowed to bind to recombinant SREBP-1a (400 ng) before the addition of [{gamma}32P]-labeled oligonucleotides containing the dSRE binding site found in the rat HDL-R promoter. A 50-fold excess of unlabeled dSRE oligonucleotide was used as a competitor, where indicated. The major DNA-protein complex is indicated by the arrow, whereas the antibody-supershifted complex is indicated by the arrowhead. The percent inhibition was calculated by comparing the density of the major protein/DNA band seen with SREBP-1a alone with the band formed in the presence of SREBP-1a/YY1. This experiment was repeated twice with both the proximal (data not shown) and dSREs, with similar results.

 
The luciferase data showing repression of SREBP-1a-induced activity in the absence of any known YY1 binding site, suggested that regulation of the HDL-R promoter by YY1 must have been the result (at least partially) of protein-protein interactions, although cis-acting factors cannot be discounted completely because YY1 could bind to other (as yet, unidentified) sites. A recent paper demonstrated that SREBP and YY1 could bind to overlapping nonconsensus sites in the rat steroidogenic acute regulatory gene promoter (34). To establish a direct protein-protein interaction between YY1 and SREBP-1a, HTB9 cells were cotransfected with the pG5-luciferase vector and the pBIND vector ± SREBP-1a, in the presence or absence of the pACT vector ± YY1 (Fig. 5Go). The 6-fold induction of luciferase activity (P < 0.001) in the presence of pBIND/SREBP-1a and pACT/YY1 confirmed that these proteins interact with high affinity, because maximal luciferase activity of the VP-16 and Gal4 proteins used in the Two-hybrid system necessitate a direct protein-protein interaction to force the promoters into close contact. These data confirm earlier studies that demonstrate an interaction between YY1 and SREBP-1a protein using GST-pulldown columns (31). In these studies, binding of YY1 to SREBP-1a was shown to prevent subsequent interactions between SREBP-1a and Sp1.



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Figure 5. Interaction between YY1 and SREBP-1a, identified using a Mammalian Two-hybrid Assay. HTB9 cells (3 x 106/well) were transfected with the pG5-luciferase vector, in the presence or absence of the vectors (2 µg each/well), as indicated. The data are presented as relative luciferase units ± SEM (*, P < 0.001). The number in parentheses next to the last bar represents the fold stimulation, compared with the luciferase level seen with pACT/YY1 alone (second bar). This experiment was performed in triplicate and was repeated twice.

 
To determine how these protein-protein interactions could possibly disrupt SREBP-1a/SRE complex formation, EMSA was performed using the dSRE (Fig. 6Go). Duplicate EMSA gels were run as follows: samples for the gel on the right were incubated with the normal amount of [{gamma}-32P]-labeled dSRE, whereas samples for the gel on the left were incubated with a similar amount of unlabeled dSRE. Standard autoradiography was performed using the gel on the right, whereas the left gel was transferred to nitrocellulose membrane and treated as a Western blot and probed with YY1 antibody. Note that YY1 protein was found as part of the major SREBP-1a/dSRE complex (Fig 6Go, lanes 6 and 12), as well as part of a large aggregate of YY1/SREBP1a proteins, which tie up SREBP-1a proteins and prevent the formation of the SREBP-1a/dSRE complex (Fig. 6Go, lanes 4–6 vs. lanes 10–12). The addition of similar amounts of rYY1 or rSREBP-1a alone did not cause this aggregation near the sample wells (data not shown).



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Figure 6. Recombinant YY1 interacts with SREBP-1a protein and interferes with SREBP-1a binding to the dSRE in the rat HDL-R promoter. A standard mobility shift assay with duplicate gels was run on the dSRE from the rat HDL-R using recombinant SREBP-1a (500 ng) with increasing concentrations of YY1 (250–1000 ng). A 50-fold excess of unlabeled (cold) dSRE was used as competitor. The gel on the right represents the normal autoradiogram from the mobility shift assay, whereas the gel on the left was transferred to nitrocellulose membrane, treated as a Western blot, and probed with YY1 antibody. The double arrows on the Western blot mark the positions of YY1 proteins in the gel, whereas the arrow pointed to the right marks the position of the major SREBP-1a-protein/labeled-dSRE complex.

 
Cotransfection studies were performed to examine the ability of YY1 to disrupt SREBP-1a/Sp1-induced synergistic activation of the HDL-R promoter (Fig. 7Go). Drosophila SL2 cells were chosen because they lack endogenous SREBP-1a and Sp1 but possess all the cofactors necessary to respond to exogenously expressed transcription factors. There was a significant decrease in HDL-R promoter activity after addition of YY1, when compared with luciferase activity in the presence of the HDL-R promoter, Sp1, and SREBP-1a.



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Figure 7. Ability of YY1 to repress SREBP-1a/Sp1-induced synergistic activation of luciferase expression under the control of the HDL-R promoter. Drosophila SL2 cells (3 x 106/well in triplicate) were transfected with the full-length HDL-R promoter (2 µg/well), in the presence or absence of pPac5.1 expression vectors (2 µg each/well) for SREBP-1a, Sp1, and/or YY1, in 6-well plates. Luciferase activity was measured in cell lysates 48 h after transfection. The data are represented as relative luciferase units ± SEM (*, P < 0.001) from a typical experiment performed twice. The fold stimulation of HDL-R promoter activity is listed in the box to the right of the graph.

 
EMSA studies were performed to determine whether YY1 was interfering with synergistic activation of the HDL-R promoter by SREBP-1a and Sp1. First, it was necessary to characterize the binding patterns of SREBP-1a incubated with Sp1 vs. that with YY1, by EMSA (Fig. 8Go). As shown in Fig. 8Go, lane 1, rSp1 did not bind directly to the dSRE or significantly affect SREBP-1a/dSRE complex formation (lane 2 vs. lane 3). However, Sp1 proteins are present in the major SREBP-1a/dSRE complex in small amounts, as evidenced by the slight decrease in complex formation after addition of Sp1 antibody (Fig. 8Go, lane 5), but do not prevent supershift of the complex by SREBP antibody (lane 6). The presence of equimolar amounts of rYY1, however, prevents complex formation (Fig. 8Go, lane 4); and addition of SREBP antibody, after rYY1 and rSREBP-1a are allowed to interact with the dSRE, resulted in the formation of two distinct complexes (SY complexes) midway between the major SREBP-1a/dSRE complex and the normal SREBP antibody-supershifted complex (Fig 8Go, lane 7). Similar results were seen with the proximal SRE under the same conditions (data not shown). The formation of uniquely sized (SY) complexes suggested SREBP-1a/YY1 heterodimer formation or that YY1 was preventing SREBP-1a protein from binding to the SRE as a multimer, because previous EMSA data failed to demonstrate any appreciable binding to the pSRE or dSRE by rYY1 alone (data not shown). Finally, EMSA was performed to examine the ability of rYY1 to disrupt any positive interactions between rSp1 and rSREBP-1a on SREBP-1a/dSRE complex formation (Fig. 9Go). rSp1 alone did not bind to the dSRE (Fig. 9Go, lane 7); however, it did slightly increase the amount of the major SREBP-1a/dSRE complex (lanes 8–10) and, in addition, overexposure of the autoradiogram resulted in the appearance of a higher-molecular-weight complex in the presence of SREBP-1a and Sp1. Addition of rYY1 (Fig. 9Go, lane 11) in the presence of rSREBP-1a and rSp1 resulted in a dramatic loss of the major complex and the complete disappearance of the higher-molecular-weight complex. This is not a nonspecific inhibition of binding caused by protein overloading, because lanes 10 and 11 in Fig. 9Go both have the same amount of recombinant protein/well (1500 ng total). rYY1 and rSp1 in the absence of rSREBP-1a do not bind to the dSRE (Fig 9Go, lane 12). Similar results were found with the HDL-R pSRE (data not shown).



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Figure 8. Interactions between recombinant Sp1 and YY1 affect the interaction of SREBP-1a protein and the dSRE in the rat HDL-R promoter, as seen in EMSA. Recombinant SREBP-1a (500 ng) was incubated with recombinant Sp1 protein (500 ng) or recombinant YY1 protein (500 ng) before addition of a [{gamma}32P]-labeled oligonucleotide containing the dSRE. A quantity of 2 µg of antibody against Sp1 or SREBP was used for the supershift. The major DNA-protein complex is indicated by the left arrow, whereas the antibody supershifted complex is indicated by the right arrowhead. The SY supershifted complex, designated by the two connected arrows, marks the location of two bands between the major protein/DNA complex and the normal SREBP antibody supershifted complex that are consistently seen in the presence of SREBP-1a, YY1, and SREBP-1a antibody. A typical mobility shift gel is shown. This experiment was repeated twice with both the proximal and dSRE, with similar results.

 


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Figure 9. The ability of recombinant YY1 to affect the interaction between SREBP-1a/Sp1 protein and the dSRE in the rat HDL-R promoter, as seen in a mobility shift assay. Recombinant SREBP-1a (500 ng) and recombinant Sp1 protein (250–1000 ng) or recombinant YY1 protein (250–1000 ng) were incubated for 20 min at room temperature before addition of a [{gamma}32P]-labeled oligonucleotide containing the dSRE. A 50-fold excess of unlabeled (cold) dSRE was used as competitor. The left arrow marks the major SREBP-1a protein/DNA complex. The top arrow located on the right marks the location of a protein/DNA band formed in the presence of SREBP-1a and Sp1. The SY complex, designated by the two lower connected arrows, marks the location of protein/DNA complexes seen exclusively in the presence of SREBP-1a and YY1. This experiment was repeated twice for both the proximal and dSREs, with similar results.

 

    Discussion
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 
The availability of adequate amounts of intracellular cholesterol is crucial for numerous physiological cell functions, including steroidogenesis and membrane biosynthesis. Earlier studies found that tropic hormone stimulation resulted in a decrease in cholesterol levels in the ovary, with a corresponding increase in HDL-R gene expression (35, 36). A recent paper from this laboratory demonstrated that a decrease in ovarian cholesterol levels correlated with an increase in mature SREBP-1a protein, along with an increase in HDL-R mRNA and a subsequent increase in HDL-R protein (20). If HDL-R levels are not increased, as in the case of HDL-R knockout mice (37), there is insufficient cholesterol available to support proper oocyte development and a healthy fetus. These studies clearly demonstrated that SREBP-mediated regulation of the HDL-R gene is sensitive to cholesterol status and that this regulation is tissue-type specific and necessary for ovarian reproductive function. Previous studies in our laboratory (14) have shown that ovarian HDL-R expression was down-regulated 4 h after PGF2{alpha} injection, in parallel with a significant decrease in serum progesterone levels. The use of cholesterol for steroidogenesis is inhibited in the ovary after treatment with PGF2{alpha}, which results in an elevation in intracellular cholesterol, along with an elevation in YY1 protein (data not shown) that could contribute to the subsequent decline in HDL-R expression.

SREBPs lack the capacity to elicit maximum gene activation on their own and, instead, require the presence of one or more coactivators. In the case of the LDL-R and fatty acid synthase promoter, the coactivator was Sp1 (22). Earlier studies by this laboratory have shown that the two Sp1 sites surrounding the pSRE have the highest affinity for Sp1 (data not shown). In the present study, we found that, although rSp1 protein did not bind directly to either SRE in the HDL-R promoter, rSp1 was present in the major SREBP/DNA complex, as evidenced by the ability of Sp1 antibody to cause a small (but definite) supershift in a portion of the major complex. This study provides additional information on the complexity of Sp1/SREBP synergism. Sp1 enhances SREBP-1a-induced activation in at least two distinct ways; first, by SREBP-enhancement of Sp1 binding to its Sp1 binding site, proposed by Bennett et al. (31); and second, Sp1 acts as a stabilizing component of the SREBP-1a/SRE complex (current study). This enhancement of transcription factor binding subsequently leads to synergistic activation of the promoter.

Maintenance of cholesterol homeostasis requires the presence of negative regulatory factors in addition to coactivators to provide a means of turning off gene expression when sufficient amounts of cholesterol are available for steroidogenesis. One candidate for negative regulation of HDL-R promoter activity is the transcription factor YY1, which was previously shown to cause repression of three SREBP-regulated genes (30). In the current study, YY1 was shown to bind specifically to YY1 binding sites in the HDL-R promoter. When both sites were available for binding, YY1 was able to repress basal and SREBP-1a-induced increases in HDL-R promoter activity. Deletion of these YY1 binding sites attenuated repression under basal conditions but still resulted in a decrease in SREBP-1a-induced activation, suggesting that repression was not dependent on YY1 DNA binding. The same pattern of repression was evident after mutational analysis of the YY1 binding sites in the HDL-R promoter (our unpublished observations). This data suggested that YY1 was capable of using multiple cofactor-specific mechanisms to exert a negative regulatory effect on the HDL-R promoter. Two-hybrid and EMSA data confirm that YY1 and SREBP-1a proteins interact. Under EMSA conditions, SREBP-1a complexed with YY1 could not efficiently bind to its SRE, suggesting that disruption of SREBP-1a binding by YY1 is one possible mechanism to down-regulate HDL-R. Sp1 was able to complex with SREBP-1a as well, but this complex did not reduce DNA binding and enhanced HDL-R transcription, demonstrating that negative regulation only occurred in the presence of the proper cofactor. Therefore, the interaction of cofactors with SREBP-1a provides an additional level of control to regulate SREBP-1a-sensitive genes. YY1 was still able to reduce SREBP-1a/SRE binding if SREBP-1a was allowed to bind to the DNA first and then YY1 protein was added, although the decrease in complex formation was much less than if the two proteins were allowed to interact directly before the addition of DNA (data not shown). RNA polymerase II is known to bind to the promoter adjacent to specific transcription factor binding sites (38), and this binding is dependent on the recognition of the protein bound at that site, not on any specific DNA sequence. It is possible that YY1 interaction with SREBP-1a protein bound to the SRE occludes the recognition domain on SREBP-1a for RNA polymerase II (or an additional member of the transcriptional apparatus), leading to the subsequent inhibition of transcription. YY1 seems to be a dominant regulator of SREBP-1a function, because it was able to disrupt SREBP-1a binding and reduce SREBP-1a-induced HDL-R transcription in the presence of the coactivator Sp-1. Unexpectedly, YY1 repression of the HDL-R promoter, in the absence of SREBP-1a (basal levels), involved a different regulatory mechanism. In this case, YY1-mediated repression was found to be dependent on YY1 binding to specific sites on the HDL-R promoter, perhaps because YY1 protein recruits a potential corepressor to the site. Recently, YY1 was shown to interact with a histone deacetylase (39). Deacetylation of DNA leaves the chromatin in a more tightly wound configuration and thus discourages protein factor binding and transcription, which could explain the decrease in basal HDL-R promoter activity after transfection with YY1. However, HTB9 cells do contain endogenous Sp1, and YY1 seems to inhibit Sp1 activity somewhat; therefore, it is possible that the decrease in HDL-R promoter activity was mediated by interference with Sp1-induced activation. Whether these binding patterns are true in vivo still needs to be determined. To do this, it will be necessary to address the question of HDL-R promoter transcription factor binding site availability using in vivo footprinting. It will be interesting to compare interactions between SREBP-1a and YY1 with the HDL-R promoter and the HMG-CoA reductase promoter, because both are SREBP-1a/sterol-responsive genes; and yet, YY1 did not inhibit the HMG-CoA reductase promoter reporter gene (30).

These data are the first to report on the negative transcriptional regulation of the rat HDL-R promoter by YY1 and to demonstrate that YY1 uses multiple mechanisms to elicit repression of HDL-R promoter activity. Under basal conditions, YY1 binding to the promoter is necessary for YY1-induced repression. YY1 repression of SREBP-1a-mediated activation does not require YY1 binding to the promoter but, instead, uses an indirect mechanism involving interaction of YY1 and SREBP-1a, which leads to the eventual disruption of SREBP-1a/SRE binding.


    Footnotes
 
1 This work was supported by grants from the National Institute of Health, R29-HD-31644 and RO1-HD-35163 (to M.P.M.); and an American Heart Association Florida Affiliate Post-Doctoral Fellowship, 9703004 (to D.L.). Back

Received July 14, 2000.


    References
 Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 References
 

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