| HOME | HELP | FEEDBACK | SUBSCRIPTIONS | ARCHIVE | SEARCH | TABLE OF CONTENTS |
REPRODUCTION-DEVELOPMENT |
Center for Reproductive Biology, School of Molecular Biosciences, Washington State University, Pullman, Washington 99164-4231
Address all correspondence and requests for reprints to: Dr. Michael K. Skinner, Center for Reproductive Biology, School of Molecular Biosciences, Washington State University, Pullman, Washington 99164-4231. E-mail: skinner{at}mail.wsu.edu
| Abstract |
|---|
|
|
|---|
, had a cryptic basic helix-loop-helix (bHLH) domain, but no start codon. When a start codon was engineered into the 5'-end of the cDNA, an in vitro translation product of SERZ-
was obtained. The longest second open reading frame with an ATG start site at 304 bp from the 5'-end coded for a 308-amino acid SERZ-ß polypeptide. Motif analysis and BLAST search of SERZ-ß showed significant homology to the DHHC domain of conserved zinc finger proteins. A number of potential phosphorylation sites were observed in the SERZ-ß polypeptide sequence. The long 5'-untranslated region of SERZ-ß prompted an investigation of both potential alternate polypeptide products, SERZ-
and SERZ-ß. Both SERZ-
and SERZ-ß proteins were detected with specific antibodies to SERZ-ß and the 5'-end open reading frame SERZ-
in a Western blot analysis of total Sertoli cell proteins. The presence of the SERZ-ß polypeptide was also confirmed by in vitro translation of the cDNA, but SERZ-
was not translated in vitro in the absence of an engineered start codon. The expression pattern of SERZ mRNA was observed in all tissues examined. The transcript size of SERZ as determined by Northern blot analysis is approximately 2.7 kb. An antisense oligonucleotide to SERZ was found not to influence basal levels of transferrin promoter activation, but significantly blocked FSH-induced transferrin promoter activation. SERZ mRNA expression was not regulated by FSH treatment of Sertoli cell cultures. In summary, a novel gene product, SERZ, was identified that appears to have a role in maintaining Sertoli cell differentiated functions and mediating FSH actions. Translation of SERZ may give rise to two gene products; however, the SERZ-ß containing the zinc finger domain is probably the principal product of the SERZ gene. | Introduction |
|---|
|
|
|---|
To identify bHLH transcription factors in Sertoli cells, RT-PCR was carried out using degenerate oligonucleotides designed toward the highly conserved basic and helix II domain of bHLH proteins (19). All of the PCR products obtained were of the ubiquitously expressed bHLH proteins E47 (19) and REB (20, 21). Screening of a rat Sertoli cell cDNA library with REB bHLH domain PCR product resulted in the identification of full-length REB gene and an additional clone with no homology to REB (22). Sequence analysis of this clone, termed Sertoli cell gene with a zinc finger domain (SERZ), demonstrated no sequence homology to any known cDNA sequence in GenBank.
The current study reports the nucleotide sequence of SERZ, its predicted amino acid sequences, and possible motifs. Two potential products of the SERZ transcript were investigated, SERZ-
with a potential bHLH domain and SERZ-ß with a conserved zinc finger motif. The expression profile based on Northern blot analysis and RT-PCR suggests that SERZ is expressed by all tissues examined. A transiently transfected reporter construct driven by the transferrin promoter was inhibited by the presence of an antisense to SERZ, suggesting SERZ may be important in regulating Sertoli cell function and hormone responsiveness.
| Materials and Methods |
|---|
|
|
|---|
RNA preparation
Freshly isolated or cultured Sertoli cells were lysed directly using Tri- Reagent (Sigma, St. Louis, MO). The cell lysate was then passed several times through a Pasteur pipette to form a homogenous lysate. The freshly dissected tissue (skeletal muscle, brain, and detunicated testis) was homogenized in Tri-Reagent (5%, wt/vol) with a tissue homogenizer (Tissue Tearor, BioSpec Products, Inc., Bartlesville, OK). To avoid any possible contamination of extracellular material and high mol wt DNA in the final RNA samples, the homogenate was centrifuged at 12,000 x g for 10 min at 4 C. Total RNA was then isolated from the cell lysate and whole tissue homogenate according to the manufacturers protocol for RNA isolation using Tri-Reagent. The final RNA pellet was dissolved in distilled water at a concentration of 1 mg/ml.
PCR
Total RNA (2 µg) was reverse transcribed in a final volume of 20 µl containing 20 U RNasin (Promega Corp., Madison, WI); 200 µM each of dATP, dCTP, dTTP, and dGTP; 1 µg oligo(deoxythymidine) (Pharmacia Biotech, Piscataway, NJ), 10 µM dithiothreitol, and 200 U Moloney murine leukemia virus (MMLV) reverse transcriptase (Life Technologies, Inc.) in the MMLV reverse transcriptase first strand synthesis buffer supplied by the manufacturer (Life Technologies, Inc.). The RNA and oligo(deoxythymidine) primer in the buffer were first denatured for 5 min at 65 C, then cooled on ice before addition of nucleotides and enzyme. The reverse transcriptase reaction was carried out at 37 C for 1 h. PCR was performed using the GeneAmp kit (Perkin-Elmer Corp./Cetus, Emeryville, CA) with 30 cycles as follows: 94 C for 1 min (denaturation), 50 C for 2 min (primer annealing), and 72 C for 1 min (primer extension). Each PCR contained 250 pg reverse transcribed DNA, 1 µM of each 5'- and 3'-oligonucleotide primer, 2.5 U Taq polymerase (AmpliTaq, Perkin-Elmer Corp.), and 200 µM of each dATP, dCTP, dGTP, and dTTP. The 5'-primer was derived from the amino acid sequence RR(K/M/I)(AN)(AN)(TN)(M/L/A)RER(RL) of the basic domain, whereas the 3'-primer was derived from the degenerate amino acid sequence (L/V)(L/E)(IT)L(HQ)(QN)(AT)(VL)(QN)(YC)(VA) of the Helix II domain. The sequences used for the primers were based on the comparison of at least 20 human, rat, and mouse bHLH proteins.
Cloning and sequencing
The PCR fragments were run on 1.5% agarose gels, stained with ethidium bromide, and visualized. The bands were then dissected out, and the DNA was isolated from the gel using the Glass MAX DNA isolation system (Life Technologies, Inc.). The purified DNA fragments were subcloned into pBluescript (Stratagene, La Jolla, CA) plasmid. The cloned DNA fragments were sequenced using standard M13 forward and reverse primers in an automated fluorescence-based sequencer (PE Applied Biosystems, Foster City, CA). The sequences were then analyzed against the known sequences in GenBank using a FASTA and BLATSn search.
Sertoli cell cDNA library
The rat Sertoli cell cDNA library was constructed in HybriZapII by Stratagene from poly(A)+ RNA isolated from purified Sertoli cells of 20-d-old rats. The HybriZap library is primarily designed for use in the yeast two-hybrid screening, but also allows for nucleic acid screening. The standard procedures for nucleic acid screening were followed as mentioned previously (27). The REB probe was digested from the pBluescript plasmid using EcoRI, dephosphorylated, and end labeled with [
-32P]ATP and T4 polynucleotide kinase (Life Technologies, Inc.). Individual plaques (1.5 x 106) were screened with the 170-bp REB
PCR fragment. The positive clones were excised from the HybriZap library to obtain pAD plasmid-containing clones. The pAD plasmids were analyzed by restriction mapping and sequencing. The sequences were subjected to a FASTA and BLASTn search against known sequences in GenBank.
The primer pair sequences used to investigate the presence of SERZ in various tissues by RT-PCR were determined empirically and synthesized from commercial sources. Primer pairs were designed to amplify an approximately 523-bp region of SERZ (14902013 bp). The possible contamination of RNA with DNA was determined by performing an RT reaction without MMLV reverse transcriptase. The absence of any product in the amplification reaction using such a reverse transcribed preparation indicated the absence of any contaminating DNA in our RNA samples. The sequence and position of the primers were as follows: SERZ 5'-primer, 5' (14901510)-AGC ACA GCA GCT GCT GGG GTC; and SERZ 3'-primer, 5' (20131993)-AGT GCT GGG TCT CAG CAC AGG.
Each RT reaction was performed using three different samples. The PCR-based amplification reactions were carried out in duplicate on each reverse transcribed RNA sample. Simultaneous PCRs were also carried out using primers designed to rat cyclophilin to monitor the efficiency of the PCR (28). Cyclophilin was faithfully amplified in all PCRs, indicating consistency in the quality of RT and PCRs. The data presented are representative of three different RT-PCRs carried out in duplicate.
Northern analysis
Total RNA from Sertoli cells or tissues were isolated as described above using Tri-Reagent (Sigma). Approximately 10 µg total RNA were fractionated on a 1% formaldehyde-agarose gel. After fractionation, the RNA was transferred onto Nylon membrane (Hybond N+, Amersham Pharmacia Biotech, Arlington Heights, IL) in 10x SSC buffer and UV cross-linked as described previously (27). The membranes were then prehybridized in Quick Hybridization buffer (Stratagene) for 30 min at 60 C. The hybridization was carried out at 60 C for 1 h with 32P-labeled SERZ probe. The membrane was subsequently stripped and rehybridized with rat cyclophilin. All probes were labeled using the Prime-It II kit from Stratagene.
Antibodies to SERZ-
and SERZ-ß
Peptides (15 amino acids) were synthesized (Center for Reproductive Biology, Molecular Biology Core Laboratory, Washington State University, Pullman, WA) toward the N-terminal (SERZ-
) and C-terminal (SERZ-ß) of the predicted SERZ protein sequences (Fig. 1
). Antibodies to SERZ-
and -ß were generated in the rabbits by Strategic Bio-Solutions (Ramona, CA). To generate an immune response SERZ-
was coupled to BSA, and SERZ-ß was coupled to keyhole limpet hemocyanin. Antibody titers were determined with ELISAs using the peptide antigens (Strategic Bio-Solutions). Antibodies were aliquoted and stored at -20 C until use.
|
or SERZ-ß. The specific antigen-antibody complex was visualized using an alkaline phosphatase chemiluminescent detection kit (Bio-Rad Laboratories, Inc.).
In vitro translations
To perform in vitro translation, the SERZ gene was subcloned into pBluescript plasmid downstream of the T7 promoter. The plasmid was linearized downstream of the SERZ gene, and in vitro translations were performed using Promega Corp.s TNT coupled system in the presence of [35S]methionine (NEN Life Science Products, Boston, MA). The reactions were run on SDS gels and fluorographed. An aliquot of the reaction was also blotted with SERZ
and -ß antibodies after gel fractionation.
Transfections
The chloramphenicol acetyltransferase (CAT) reporter plasmid (pUC8-CAT) containing -581 bp (-581 bp mTf-CAT) of the proximal mouse transferrin promoter was provided by Dr. G. Stanley McKnight (University of Washington, Seattle, WA) (29). The mouse transferrin promoter used in the present study included the transcriptional initiation site of the transferrin gene, which is 54 bp upstream of the translation start site. Sertoli cells cultured in 24-well cell culture plates for 48 h were transfected with the reporter gene construct by the calcium phosphate method coupled with hyperosmotic shock (10% glycerol) as previously described (30, 31). In each experiment the transfection efficiency was monitored by transfecting the Sertoli cells by the plasmid containing ß-galactosidase gene driven by a cytomegalovirus promoter. Subsequent staining and counting the cells expressing ß-galactosidase (blue color) resulted in 25% transfection efficiency. The antisense to SERZ was synthesized using phosphorthiote modification. The antisense oligonucleotide to SERZ (4 µM) was added to the Sertoli cells 4 h after transfection. The cells were subsequently treated with FSH. The antisense oligonucleotide was added to the culture wells every 12 h for a total period of 48 h, after which the cells were harvested for the CAT assay as described previously (31). The average conversion of CAT substrate for treated cells ranged between 2030%. This assay was linear with the protein concentration used.
Sequence motif analysis
GCG DNA analysis software was used to generate the restriction map and translation to the corresponding protein sequence. FASTA and BLASTn (NCBI BLAST) against GenBank, Entrez, and SRS links were used to generate a homology table of SERZ. The MOTIF and PATTERNS analysis package available on the worldwide web was used to identify motifs in the SERZ sequence. Phosphorylation patterns in SERZ were determined by PROSITE analysis.
| Results |
|---|
|
|
|---|
gene, a spliced variant of the REB gene (20), and an additional clone, termed SERZ. SERZ showed no homology to the REB nucleotide sequence at the nucleotide level. The nucleotide sequence of SERZ revealed an insert of 2690 bp with a consensus poly(A)* site (AAUAAA) present toward the 3'-end of the sequence, followed by a poly(A) region (Fig. 1
|
|
|
|
. As shown in Fig. 1
had a sequence with some homology to a bHLH domain.
The absence of a start codon sequence for the SERZ-
sequence shown in Fig. 1
suggests that the SERZ sequence may be incomplete at the 5'-end. The presence of a consensus ATG translational initiation codon 305 bp downstream of the 5'-end of the sequence suggests that either SERZ-ß has a long 5'-untranslated region or a possible sequencing error or there is an additional sequence at the 5'-end. The sequence error possibility prompted a repeat of the sequencing using a different set of internal primers every 200 bp in both the forward and reverse directions to confirm the absence of any sequencing error. Using 20 different primers in forward and reverse directions, no sequence error was observed that would either change the reading frame or extend the length of the longest open reading frame. Rapid amplification of 5-'-cDNA ends (5'-RACE) on Sertoli cell RNA was performed with primers designed 300 bp downstream of the 5'-end. No additional sequence using 5'-RACE was obtained (data not shown). Observations suggest that either the reported SERZ sequence is complete, or there is a GC-rich region that was not being transcribed in the 5'-RACE reaction. Similar results were obtained when the 5'-RACE was performed using two different kits from different vendors [i.e. Ambion, Inc. (Austin, TX) and Invitrogen]. No additional sequences were obtained at the 5'-end. To further explore the possibility that additional sequences may be present at the 5'-end, the mouse genomic sequence AF059580 was explored for the presence of additional upstream exons. PCR 5'-primers were designed in the two predicted exons, and PCR was performed with the 3'-primers used in the RACE reaction on reverse transcribed Sertoli cell mRNA. No specific PCR products were observed. Taken together, these results suggest that either the SERZ sequence reported in this study is complete or the presence of strong secondary structure/high CG content is detrimental to the PCRs used, including RACE.
Northern blot analysis of the whole testis RNA with SERZ as a probe suggested that the SERZ transcript size is approximately 2.7 kb (Fig. 5
). This 2.7-kb SERZ transcript was expressed in the testis as well as all other tissues examined, such as prostate, muscle, brain, kidney, lung, and heart. The Northern blots for expression of SERZ in Sertoli cells cultured with or without FSH were subjected to a densitometric scan to determine whether SERZ expression is regulated by FSH. Quantitation of the Northern blot densitometric scans suggested the expression of SERZ by Sertoli cells is not regulated by FSH (Fig. 5
). To further analyze the expression of SERZ, an RT-PCR with SERZ-specific primers using RNA obtained from the testis and various other tissues was performed. As shown in Fig. 6
, SERZ expression (520-bp band) was observed in Sertoli cells and all other tissues examined (Fig. 6
). This observation compliments the Northern blot data.
|
|
|
may be an alternate or second product of SERZ prompted an investigation of the possibility that the SERZ mRNA may code for an additional protein SERZ-
. A 15-amino acid long peptide fragment within the SERZ-
polypeptide (amino acid, CLPHTCRAGPSRTEL; Fig. 1
IgG was used to probe total Sertoli cell proteins. As shown in Fig. 8
peptide used to generate the antibody was coupled to BSA. Since the 25-kDa protein band was consistently observed, the SERZ-
antibody was preabsorbed with BSA. Results demonstrate that the SERZ-
antibody recognized a Sertoli cell protein at 25 kDa. Analysis of the SERZ in vitro translation product with the SERZ-
antibody showed no detectable SERZ-
protein (data not shown). Therefore, the SERZ-
protein was detected in Sertoli cell extracts, but was not translated by the full-length SERZ clone in vitro.
|
|
| Discussion |
|---|
|
|
|---|
within the highly conserved bHLH domain (20, 22). The absence of any similarity between the SERZ sequence and the REB
gene sequence suggested that the identification of SERZ was possibly due to a bHLH motif sequence interaction in the SERZ transcript.
The nucleotide sequence of SERZ revealed an insert of 2698 bp that corresponds to the estimated transcript size of approximately 2.7 kb from Northern blot analysis. The presence of a consensus poly(A) site followed by a poly(A) region at the 3'-end of the SERZ sequence was identified. The longest open reading frame of 924 bp coding for a 308-amino acid protein was observed in the first reading frame, followed by 550 bp of 3'-untranslated region. The ATG start site for this open reading frame is at 304 bp. This open reading frame and its product were termed SERZ-ß. 5' to this SERZ-ß open reading frame is an alternate open reading frame that starts at the SERZ 5'-end and has a stop codon at 271 bp. No start site was found for this open reading frame that is termed SERZ-
. 5'-RACE analysis demonstrated the SERZ sequence is complete. These two products of the SERZ transcript, SERZ-
and SERZ-ß, are further characterized in the current study.
Sequence analysis of the two potential SERZ products revealed interesting amino acid motifs. SERZ-
has a potential bHLH domain that clarifies why the SERZ transcript was isolated from the cloning strategy and suggests that this protein product may be a bHLH transcription factor (35). The SERZ-ß sequence has a consensus zinc finger motif (32) as well as phosphorylation, glycosylation (33), and myristolation (34) sites. These SERZ products appear to have the potential to influence signaling pathways and transcriptional events.
The expression pattern of SERZ as observed by Northern blot analysis suggests that SERZ is ubiquitously expressed with maximum expression being in the kidney. The Northern blot data and its quantitation in Sertoli cells suggest SERZ expression is not regulated by the gonadotropin FSH that is known to regulate many Sertoli cell functions (4, 5). Therefore, SERZ mRNA is widely expressed and may be important for a variety of cell types and tissues.
An antisense oligonucleotide approach was used to investigate the functional significance of SERZ in Sertoli cells. It was previously shown that the activity of the mouse and human transferrin promoter is regulated by FSH in Sertoli cells (8, 11, 36). A significant reduction in the FSH-induced activation of the transferrin promoter was observed with the SERZ antisense oligonucleotide. Observations suggest that SERZ has a role in maintaining Sertoli cell differentiated function and influences FSH activation of Sertoli cell function.
Based on Western blotting data, it is speculated that the SERZ gene may generate two translation products, SERZ-
and SERZ-ß. The identification of two translational products from a single gene is a relatively novel observation and suggests a possible mechanism by which genetic information can be conserved to generate diverse functional proteins. Similar mechanisms have been previously reported in viral systems (37, 38, 39) and more recently in mammalian systems (40, 41). The data from in vitro studies partially support this observation. A distinct SERZ-ß antibody-reactive product was identified when SERZ was translated in vitro, but no SERZ-
product was observed. However, addition of an ATG start codon site at the 5'-end of the SERZ sequence resulted in the identification of a SERZ-
antibody-reactive product in the in vitro translation product (data not shown). These observations support the potential that SERZ may code for at least two different proteins. Whether SERZ-
is a functional bHLH protein remains to be determined. The presence of the highly conserved Cys4 zinc finger-like DHHC domain in the SERZ-ß sequence suggests that it may have an important function in the cell, possibly related to protein-protein or protein-DNA interactions. The down-regulation of the transferrin promoter by the SERZ antisense oligonucleotide further confirms the significance of these proteins in Sertoli cells. The SERZ antisense oligonucleotide inhibited FSH activation of the transferrin promoter, but did not affect basal activity. FSH is critical for maintenance of optimal Sertoli cell differentiation and function. FSH also regulates a wide variety of Sertoli cell functions. SERZ appears to have a role in the regulation of Sertoli cell function in mediating in part FSH actions.
Sequence analysis and comparisons identified a partial restriction digest Sau3A fragment of the mouse genome C (GenBank accession no. AF059580) with a strong homology to SERZ. The alignment of the SERZ sequence with the Sau3A mouse genomic fragment spanned approximately 15 kb and included 10 exons. A detailed comparison of the sequence demonstrated strong conservation of SERZ-ß in mouse, rat, and human. However, no conservation in SERZ-
and the bHLH domain was found between rat SERZ-
and mouse SERZ. This suggests that SERZ-ß is probably the principal product of the SERZ gene, and this zinc finger-containing protein may influence the functions of a wide variety of cells.
In summary, we report the isolation and sequence of a novel gene, SERZ, with a principal product with strong homology to the zinc finger-like DHHC domain that may be involved in maintaining Sertoli cell function and FSH actions. Our observation that the rat SERZ may produce two translation products is intriguing and requires further investigation. The potential that a single gene transcript may generate multiple protein translation products through alternate open reading frames needs to be considered as an efficient utilization of genomic sequences. This phenomenon has been found in viral and bacterial transcripts. This provides a useful process for energy conservation and evolutionary strategy to link gene functions. The impact this would have in our analysis and understanding of the current genomic database suggests that serious consideration of multiple open reading frame use on individual transcripts should be further investigated.
| Acknowledgments |
|---|
| Footnotes |
|---|
1 Current address: Atairgin Technologies, Inc., 101 Theory Suite 150, Irvine, California 92612-3045. ![]()
Abbreviations: bHLH, Basic helix-loop-helix; CAT, chloramphenicol acetyltransferase; MMLV, Moloney murine leukemia virus; RACE, rapid amplification of cDNA ends; SERZ, Sertoli cell gene with a zinc finger domain.
Received July 26, 2001.
Accepted for publication October 15, 2001.
| References |
|---|
|
|
|---|
in rat testicular cell. Biol Reprod 60:12441250This article has been cited by other articles:
![]() |
C. Fang, L. Deng, C. A. Keller, M. Fukata, Y. Fukata, G. Chen, and B. Luscher GODZ-Mediated Palmitoylation of GABAA Receptors Is Required for Normal Assembly and Function of GABAergic Inhibitory Synapses J. Neurosci., December 6, 2006; 26(49): 12758 - 12768. [Abstract] [Full Text] [PDF] |
||||
![]() |
C. Fernandez-Hernando, M. Fukata, P. N. Bernatchez, Y. Fukata, M. I. Lin, D. S. Bredt, and W. C. Sessa Identification of Golgi-localized acyl transferases that palmitoylate and regulate endothelial nitric oxide synthase J. Cell Biol., July 31, 2006; 174(3): 369 - 377. [Abstract] [Full Text] [PDF] |
||||
![]() |
C. E. Ducker, L. K. Griffel, R. A. Smith, S. N. Keller, Y. Zhuang, Z. Xia, J. D. Diller, and C. D. Smith Discovery and characterization of inhibitors of human palmitoyl acyltransferases. Mol. Cancer Ther., July 1, 2006; 5(7): 1647 - 1659. [Abstract] [Full Text] [PDF] |
||||
![]() |
J. T. Swarthout, S. Lobo, L. Farh, M. R. Croke, W. K. Greentree, R. J. Deschenes, and M. E. Linder DHHC9 and GCP16 Constitute a Human Protein Fatty Acyltransferase with Specificity for H- and N-Ras J. Biol. Chem., September 2, 2005; 280(35): 31141 - 31148. [Abstract] [Full Text] [PDF] |
||||
![]() |
C. A. Keller, X. Yuan, P. Panzanelli, M. L. Martin, M. Alldred, M. Sassoe-Pognetto, and B. Luscher The {gamma}2 Subunit of GABAA Receptors Is a Substrate for Palmitoylation by GODZ J. Neurosci., June 30, 2004; 24(26): 5881 - 5891. [Abstract] [Full Text] [PDF] |
||||
![]() |
J. J. Buzzard, N. G. Wreford, and J. R. Morrison Thyroid Hormone, Retinoic Acid, and Testosterone Suppress Proliferation and Induce Markers of Differentiation in Cultured Rat Sertoli Cells Endocrinology, September 1, 2003; 144(9): 3722 - 3731. [Abstract] [Full Text] [PDF] |
||||
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| HOME | HELP | FEEDBACK | SUBSCRIPTIONS | ARCHIVE |