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RECEPTORS |
Receptron, Inc. (T.N., R.I.K., J.L., K.W., A.B., L.O.), Mountain View, California 94043; Biovitrum, previously a Division of Pharmacia Corporation (D.H.), SE11276 Stockholm, Sweden; Department of Pharmaceutical Sciences (K.Y.C.F., M.W.D.), University of Colorado Health Sciences Center, Denver, Colorado 80262; Department of Chemistry (N.A.), University of Washington, Seattle, Washington 98195; and Stanford University (A.G.), Stanford, California 95305
Address all correspondence and requests for reprints to: Lennart Olsson, Receptron, Inc., 835 Maude Avenue, Mountain View, California 94043. E-mail: . lolsson{at}mcimail.com
| Abstract |
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| Introduction |
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It was previously reported that a peptide, designated EPOR peptide (ERP), with sequence identical to a site on the EPOR, activates receptor signaling in the absence of EPO and can also act in synergy with EPO (14).
We now report on characteristics of the binding site for ERP on EPOR and of the complex formed by EPOR-ERP. The ERP sequence (amino acids 194216 of human EPOR) is contained in the same extracellular domain of EPOR as that known, from x-ray crystallographic studies, to participate in dimerization of activated receptor chains (10, 11, 15). Further, bindings studies show that ERP binds to a membrane proximal region on EPOR, between amino acids 174223. The binding sites for EPO and ERP on the EPOR are different, with the ERP site being more membrane proximal than EPO.
EPOR activation is now described to be a result of ERP binding in the region where two receptor chains normally interact in a scissor-like model in response to hormone binding. The stable complex between ERP and EPOR has a 1:1 stoichometry. ERP binding to EPOR results in receptor- mediated signal transduction, cell proliferation, and CFU-e colony formation.
| Materials and Methods |
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PY) and rabbit polyclonal antibodies against EPO, STAT5, and EPOR were from Santa Cruz Biotechnology, Inc. (Santa Cruz, CA). Western blots were scanned, and intensity of the protein bands was quantitated.
Cell proliferation
TF-1 cells were grown as described previously. Before proliferation experiments, the cells were starved overnight in media with 5% FCS, washed, and resuspended to a density of 5 x 105 cells/ml in a media with 5% serum. Fifty thousand cells were used per well; triplicates were performed per experimental condition. Peptide or EPO was added in desired final concentrations. Plates were incubated for 68 h at 37 C, 5% CO2. Proliferation solution (tetrazolium salt solution, CellTiter 96, Promega Corp., Madison, WI) was added, and cell proliferation was evaluated by reading at A 490 nm.
CFU-e formation
Bone marrow cells were isolated from mouse femurs. Cells were washed twice with PBS and resuspended to a density of 6.5 x 106 cells/ml in media; 300 µl of cells were mixed with 3.0 ml of methylcellulose media (StemCell Technologies, Vancouver, British Columbia, Canada), to which the desired concentration of ERP (130 µM) or the EPO (10 U/ml) was added. The mixture was poured onto 35-mm dishes; all the conditions are performed in duplicates. The incubation was for 8 d at 37 C, 5% CO2. The colonies were scored on d 7, and cells were stained with May-Grunwald-Giemsa (StemCell Technologies) solution for cell lineage determination.
ERP binding to TF-1 cells
Cells were maintained in RPMI-1640 supplemented with 5 mM glutamine, 100 U/ml penicillin, 10 mg/ml streptomycin, 10% FBS (HyClone Laboratories, Inc., Logan, UT), and 1 ng/ml GM-CSF. Cells were grown in RPMI-1640 (supplemented as above) to a density of approximately 1 x 106/ml, centrifuged (200 x g, 5 min), and resuspended in medium with 5% serum and no GM-CSF. Cells were starved 1216 h at 37 C in 5% CO2, centrifuged, and resuspended to 2 x 107/ml in medium without serum and GM-CSF. Cell suspension (1 ml) was incubated with 1 x 107 cpm [125I]ERP in the presence or absence of 10 µM ERP, or alternatively with 1 x 106 cpm [125I]EPO in the presence or absence of 10 U/ml EPO. Cell suspension was incubated with end-over-end rotation overnight at 4 C. Cells were washed three times with PBS and lysed in 200 µl of a 2x lysis buffer for 30 min at 4 C. SDS sample buffer (without reducing agent) was added to cleared cell lysates, and the proteins were separated on 7% SDS-PAGE. Gels were exposed to film.
ERP binding to purified receptor
Extracellular binding protein (EBP) (recombinant human soluble receptor (sR), EPO-sR) was purchased from R&D Systems (Minneapolis, MN). Binding of ERP and of EPO to EBP was performed in PBS buffer overnight at 4 C. Unless specified otherwise, 160 nM EBP was incubated with 300 pM [125I]EPO (specific activity 300 Ci/mmol; Amersham Pharmacia Biotech) in the absence or presence of 10 U/ml EPO. Alternatively, EBP was incubated with 200 pM [125I]ERP in the absence or presence of 1 µM ERP. ERP was synthesized, characterized, and 125I-labeled (specific activity 1015 Ci/mmol) as previously described (14). After overnight incubation, SDS sample buffer without reducing agent was added to the mixture, and samples were separated on SDS-PAGE 8%, 10%, or 12%, depending on which complexes were to be separated. Gels were exposed on film.
Expression of EBP in Escherichia coli
The cDNA encoding human EPOR gene was constructed as previously described (14). The extracellular domain of the human receptor was amplified by PCR from a full-length human EPOR, using the following 5' and 3' primers, respectively: 5'-GGAATTCCATCGAAGGTCGTGCGCGCCCCCGCCTAAC and 5'-GGGGCGGCCGCCTAGGGGTCCAGGTCGCT. The amplified DNA was digested with EcoRI and NotI and ligated into the corresponding sites in pGEX-4T-3 vector. The extracellular portion of the EPOR recombinant protein was expressed in E. coli as a glutathione S-transferase (GST) fusion protein, and purified on GSH-Sepharose beads. This construct allows induction of a GST-EPOR extracellular domain (EBP) fusion protein by IPTG. Factor Xa cleavage site was engineered between GST and EPOR extracellular domain. Fusion protein was first eluted from GSH beads, than cleaved with Factor Xa overnight at 4 C in buffer (10 mM Tris, pH 7.6, 10 mM CaCl2, 100 mM NaCl). After cleavage of GST protein with Factor Xa, the remaining EBP is a mature 226-residue protein (amino acids 25250, SwissProt numbering). Purification of EBP was done by affinity chromatography on GSH-beads to remove GST protein, and streptavidin beads to remove biotinylated Factor Xa. The binding of [125I]EPO and [125I]ERP to the purified protein expressed in E. coli was comparable with the binding obtained with purchased fully glycosylated EBP (R&D Systems, Minneapolis, MN).
Calorimetric analysis
The isothermal titration calorimetry (ITC) experiments were performed in a Thermal Activity Monitor (Thermometric AB, Järfälla, Sweden), equipped with nanowatt-amplifiers and 1-ml titration vessels. The experiments were performed at 15 C, 20 C, 30 C, and 35 C. The calorimeters were calibrated electrically using both static and dynamic calibrations. EBP was dialyzed against 50 mM sodium phosphate and 100 mM sodium chloride at pH 7.4. ERP was dissolved in water and diluted with the dialyzing buffer to 150200 µM. The EBP was diluted with water to have the same buffer condition for titrant and titrand. Concentration determination of EBP was done by absorbance at 280 nm, using extinction coefficient
= 41400 M-1cm.
An EBPsolution (0.9 ml; 10 µM) was placed in the titration cell, which was stirred at a rate of 60 rpm. At each titration, 2535 additions of ERP (150200 µM) where made at intervals of 48 min between each addition. Experimental control, data collection, and data analysis were done using the Digitam Software (Scitech Software, Järfälla, Sweden).
Matrix-assisted laser desorption ionization (MALDI)-TOFMS (time-of-flight mass spectrometer) analysis
The experiments were performed after incubation of ERP with EBP, overnight at room temperature. In these experiments, all buffers were free of albumin and other proteins that may interfere with the assay. Recombinant EPO-sR (EBP) was incubated overnight (Tris buffer, pH 8.0), at room temperature, with varying amounts of ERP in the ratios of 1:0.5; 1:1; 1:3; 1:6; and 1:12. All were in aqueous solution. EBP/ERP, incubated in the ratios 1:6 and 1:12 (100 pmol EBP with 600 pmol ERP or with 1200 ERP), provided evidence of formation of EBP-ERP complexes. EBP without addition of ERP was used as control. Mass analyses of EBP only, of ERP only, and of EBP-ERP complex were performed on a Voyager DE-STR MALDI-TOFMS analyzer (Perspective Biosystems, Framingham, MA). Mass determinations were made in positive ion linear mode with delayed extraction. Sinapinic acid (Sigma) was used as matrix (5 mg/ml; 80% CH3CN, 0.1% trifluoroacetic acid). The average mass of the ERP was determined by internal 2-point calibration to substance P (Sigma) and bovine insulin (Sigma). The average molecular mass of EBP, both pre- and post incubation, was determined by external 2-point calibration to lysozyme and BSA (Fisher Scientific, Houston, TX).
CNBr (cyanogen bromide) digest
Approximately 50 µg E. coli-purified EBP were incubated with 10 µM ERP, overnight at 4 C, in PBS. Protein was digested in 75% formic acid with 0.2M CNBr, for 24 h at room temperature, in the dark. Digested protein solution was dried and resuspended in 50 µl PBS. SDS sample buffer (without reducing agent) was added, and the proteins were separated on 715% gradient or 10% NuPAGE BT/MES gels (Novex). Duplicate halves of the gel were prepared. After transfer, one half of the Immobilon-P membrane was blocked and then incubated with anti-ERP antibody (1:1000 dilution), and the other half of the membrane was stained with Coomassie Blue. The Western blot served as a guide in identifying the Coomassie Blue band containing the EBP fragment with bound peptide. That band was cut out of the stained membrane and sequenced, at Molecular Structure Laboratory at the University of California, Davis, on the ABI 477 (Foster City, CA) sequencing machine.
| Results |
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ERP) recognizes the peptide whether it is bound to EPOR or free. The
ERP antibody, however, does not bind to the receptor in Western blots, despite the presence of the ERP sequence in the receptor molecule. This is presumably caused by different conformations in the free peptide compared with the corresponding sequence when it is part of the receptor. The lower band (
80 kDa, lanes 2, 3, and 6) corresponds to ERP associated with phosphorylated receptor monomer (16) alone, the upper band (
120 kDa, lanes 3 and 6) to a ternary complex of the ERP associated with a complex of EPO (ligand) and EPOR.
In Fig. 1B
, the gel was again run under nonreducing, nondenaturing conditions. The Western blotting antibody (
EPO) binds to EPO. The bands in lanes 34 correspond, as expected, to one EPO molecule binding to a dimerized receptor. The band at approximately 120 kDa, representing a complex of EPO and monomer chain of EPOR, is much weaker; this may be attributable to low stability of the 1:1 complex of EPO and EPOR, to lower affinity of the
EPO antibody, or to a dominant amount of dimer complexes at low EPO concentrations. Figure 1B
, lanes 56, also illustrates the well-known reduction of signaling (measured by phosphorylation) by a high concentration of EPO (bell-shaped dose-response curve). In this case, only a weak band is seen at the molecular mass of a complex of EPO+2EPOR, and no band is seen for a complex of EPO+EPOR.
Analysis of phosphorylation of the EPOR itself is seen in Fig. 1C
, using an antibody specific for EPOR. Thus, because only phosphorylated molecules were immunoprecipitated, the Western blot shows phosphorylated EPORs. The gel for Western blot was in contrast to panels A and B, run under reducing and denaturing conditions. It is seen that stimulation of TF-1 cells with either ERP or EPO results in phosphorylation of the EPOR.
Finally, phosphorylation of the intracellular substrate STAT5 was studied in panel D, using an antibody to STAT5 for the Western blot. Again, both ERP and EPO result in phosphorylation of STAT5. Lane 5 also shows, as expected, a reduction in phosphorylation of STAT5 at high EPO concentrations, in agreement with the bell-shaped dose-response curve. It is interesting, and in line with previous results (14), that ERP eliminates any sign of a bell-shaped curve effect of EPO (lane 6), i.e. high concentrations of EPO do not result in decreased substrate phosphorylation when ERP is present. This abolition of the bell-shaped form of the dose-response curve of EPO-induced EPOR activation suggests that ERP binding results in stabilization of the active conformation of the EPOR chain, even when EPO is bound to a single receptor chain.
Cell proliferation and colony formation
The ability of ERP to stimulate cell proliferation was evaluated. Figure 2A
shows that ERP promotes TF-1 cell proliferation in a dose-responsive manner. ERP promotes cell proliferation but with a significant right shift in a dose-response curve (about 10-fold), compared with its effects on substrate phosphorylation. The difference in ERPs effectiveness in these two systems may be caused by the fact that almost all of the peptide is degraded within 24 h (data not shown). In the system used to measure cell signaling via substrate phosphorylation, the cells are incubated with peptide for only 2060 min. Cell proliferation, on the other hand, requires that the cells be incubated with peptide for 4872 h. Peptide degradation almost certainly plays a role in this assay.
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Colonies were scored 7 d after the seeding and were stained with May-Grunwald-Giemsa, and formation of erythroid colonies was confirmed morphologically. Maximal numbers of colonies were approximately the same for EPO and ERP at their maximal effect.
ERP binding to EPOR
The interaction between ERP and EPOR was analyzed by several methods. First, binding of [125I]EPO and [125I]ERP to intact receptor was studied in whole cells. Upon binding of the labeled ligand to whole cells, the latter were lysed and analyzed by PAGE (Fig. 3A
) under nonreducing conditions. Radiolabeled EPO binds to a molecule of apparent molecular mass corresponding to that of dimerized EPOR, whereas radiolabeled ERP binds to a molecule of size corresponding to that of an EPOR monomer chain. Competition by nonradioactive EPO and ERP (lanes 2 and 4) shows that the binding of both ligands is specific. Surprisingly, SDS does not affect the complex. Bound 125I-labeled ERP can be competed out with unlabeled peptide (see further below), excluding covalent binding through cysteine bridges. On the other hand, the strong binding of ERP concurs with the extremely slow off-rate of the peptide upon binding to the receptor. It should be noted that the PAGE-gel system used to separate proteins in lysates of whole cells was different (12%) from the PAGE-gel system for immunoprecipitated proteins in Fig. 1
(8% PAGE). Such differences may have caused apparent differences in mobility of otherwise identical protein complexes.
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The competition curve presented in Fig. 3C
was performed by incubating 160 nM EBP with 125I-ERP and cold ERP at the concentrations indicated. The competition binding curve for [125I]ERP to EBP (Fig. 3C
) indicates an apparent dissociation constant (Kd) of approximately100 nM. The inset in Fig. 3C
shows that similar peptides (used at 10 µM concentrations), derived from GH receptor (GRP), thrombopoietin receptor peptide (TRP), and IL-4 receptor (IL4P), did not compete with [125I]ERP for binding to EBP, although each of these peptides competes with its own cognate peptide when binding to its respective native receptor (data not shown). Therefore, the binding of ERP to the EPOR binding protein is selective. Cross-linking experiments between ERP and either EPOR (whole cells) or EBP also demonstrated the presence of one dominant complex corresponding to a 1:1 ratio between ERP and the receptor (data not shown). Homobifunctional sulhydryl-reactive cross-linking reagent, 1,4-di-[3'-(2'-pyridyldithio)-propionamido]butane (DPDPB) (3), was used.
Binding of ERP to EBP was also studied by ITC. At 35 C, the calorimetric data could be rationalized to a 1:1 binding model (Fig. 3D
). The apparent Kd is 240 ± 100 nM, calculated from nonlinear regression; and the enthalpy of binding,
H°, = 31.6 ± 1.4 kJ mol-1. The entropy of binding at this condition is positive with the value
S° = 229 ± 6 J K-1 mol-1. Both entropy and enthalpy data suggest that hydrophobic interactions are dominating features of the binding. Heat capacity data (
Cp) for the binding could not be obtained, because ITC experiments at lower temperatures (5 C and 20 C) were hampered by dominating nonideality effects of ERP in solution. These effects could not be rationalized into any simple model. Consequently, a calorimetric analysis of ERP binding to EBP was not feasible at lower temperatures. Interestingly, the nonideality of ERP was not present at 35 C, permitting a calorimetric study at that temperature. In agreement with this, analysis of ERP by NMR in PBS at pH 7.4 revealed a distinct line broadening of the 1H-NMR spectra at lower temperatures (data not shown). This line broadening, attributable to slow tumbling of the peptide in solution, is consistent with formation of peptide aggregates at low temperature.
Finally, as seen in Table 1
, MALDI-TOFMS analysis demonstrated that ERP binds to a monomer form of EBP (a complex of 1:1 ratio between peptide and EBP), and that this complex persists in the gas phase. No evidence was observed for formation of an EBP-ERP complex when the same samples were analyzed by electrospray liquid chromatography-mass spectroscopy. This result is consistent with a noncovalent association between ERP and EBP, forming a complex that dissociates during chromatography. Similar noncovalent interactions of this type have recently been established by MALDI (17).
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5 kDa) was detected by Coomassie Blue staining. This new band yielded the same N-terminal EBP sequence, but the peptide sequence was now no longer present. The 5-kDa fragment corresponds to a region of EBP between amino acid residues 174216, whereas the ERP sequence corresponds to a region of EBP defined by residues 194216. It is therefore speculated that ERP binds to EBP by interacting with its identical sequence, because the peptide molecules of ERP self-interact. This shows unambiguously that, under nonreducing conditions, ERP binds to EBP in the receptor domain exactly where the sequence of homology is detected. However, because the Edman procedure only detects the sequences of the peptide and the 5-kDa fragment from the N-terminal end, and residue by residue, the alignment of ERP with the 5-kDa fragment cannot be established. ERP seems to bind only to the 5-kDa fragment in a 1:1 ratio. The residues of crucial importance for this binding are not yet established but are currently being studied through structural and mutagenesis experiments.
Experiments with radiolabeled ERP (data not shown) confirmed that the size of the CNBr fragment to which [125I]ERP binds corresponds to the same fragment identified by Western analysis using antibody to ERP. The dependence of ERP binding on nonreducing conditions indicates the possibility of a disulfide bond between the cysteine residues of ERP and EBP (see sequences). Although such covalent association could not be excluded as a secondary interaction, our data indicate that it is not necessary for peptide binding, because radiolabeled or biotinylated ERP can be displaced with unlabeled peptide in pulse and chase experiments.
| Discussion |
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Here, we describe the activation of EPOR by ERP, a small peptide that binds to the receptor at a site that is different from the hormone binding site: 1) this bioactive peptide does not affect the binding (either in terms of number of binding sites or of affinity) of the natural ligand (EPO) to the receptor; and 2) ERP and EPO act in synergy in in vitro signaling (14), in vivo experiments, and on CFU-e formation from bone marrow. In contrast, EPO mimetic peptides with binding sites identical to the ligand binding site have been reported (reviewed in Ref. 18).
Sequence analysis of the EPOR/ERP complex suggests that the peptide is binding to an extracellular portion of the receptor close to the membrane. The binding site is between amino acid residues 174223, and the transmembrane domain starts at amino acid residue 250. The 8-kDa band (lane 5 in Fig. 4A
), representing a complex of the 3-kDa ERP with the 5-kDa EBP fragment, indeed contained the ERP sequence, as shown by the Edman degradation analysis. It is of considerable interest that the 5-kDa EBP fragment is localized precisely in the receptor region (aa 174223) that also contains the sequence of the ERP (aa 194216). Therefore, it seems most likely that the binding site for ERP to the receptor is in this region. Further, the ERP molecules self-interact, and we therefore speculate that ERP binds to the 5-kDa fragment by interacting with its identical sequence in this fragment. This is supported by cross-linking experiments, as well as by data from a previous report on other similar peptides (19). The 5-kDa receptor fragment comprises a region that is part of the receptor dimerization domain. It is suggested that the ERP binding site on EPOR also has a functional role in the activation of EPOR in the presence of normal ligand, because this site is localized in the dimerization region of the receptor.
The binding studies indicate a slow on-rate and a particularly slow off-rate for the ERP/EBP interaction. In fact, ERP remains bound to the receptor, even upon lysis of the cells and PAGE analysis. Radiolabeled ERP can be displaced from the receptor with unlabeled ERP in a bind-and-chase experiment (data not shown), indicating that the binding is noncovalent. The affinity of ERP to the receptor seems to be in the nanomolar range but is difficult to determine precisely because of: 1) self-aggregation, whereby ERP is not available for binding to the receptor; 2) different conformations of ERP, where some may be active and others inactive; and 3) uncertainty as to whether equilibrium is achieved. The calorimetric measurements indicate a Kd of approximately 200 nM. This value for binding affinity is in line with previous data from binding studies of labeled ERP to purified EPOR binding protein or to cells (14). The estimated EC50 value for biological activity, as measured by activation of signaling, is approximately 100 nM.
ERP has a self-interacting property. The ITC and 1H-NMR data suggest that the degree of aggregation is strongly temperature-dependent and that the aggregation process has cooperative features. The cooperative properties are manifested by the dominating contributions of heat of dilution of the peptide in the binding ITC experiments at lower temperatures, but there are no (or nondetectable) contributions at higher temperatures. We therefore speculate that the same features resulting in peptide-peptide interaction also are important for binding of ERP to EPOR binding site that contains the same sequence as ERP.
The peptide (ERP) can, by itself, initiate the signal transduction cascade as generally understood for EPO, i.e. phosphorylation of EPOR, of STAT-5 or JAK-2 (14), stimulation of cell proliferation, and CFU-e formation in bone marrow. It is unclear, however, whether the ERP induces dimerization of the receptor. In fact, the following lines of evidence suggest that the traditional dimerization may not occur: 1) Binding of 125I-labeled peptide suggests a stable 1:1 ratio. Minor presence of 2:1 or 2:2 complexes shows the possibility of 2:1 complex formation. The calorimetric (and, to some extent, also MALDI-TOFSM) analyses indicate a ratio of 1:1 between ERP and the receptor, i.e. one ERP binds to one EPOR chain. 2) In vitro signaling experiments suggest that the activated complex contains one receptor chain (immunoprecipitation and Western blot analysis under the nondenaturing conditions). 3) ERP eliminates the bell-shaped curve for activation of the receptor by EPO (14). The bell-shaped curve is assumed to be caused by a lack of dimerization, because each receptor chain is occupied by a ligand, thereby preventing formation of an active dimer. However, if each chain is in a stable active conformation because of the binding of ERP, the bell-shaped curve is eliminated, even at high concentrations of EPO.
This seems to somewhat contradict the notion that the EPOR must be homodimeric to signal. However, it may not be a significant contradiction. One may envision that ERP binds to one or both chains in the dimerization region. This could bring one or both chains into an active conformation in the absence of EPO, and signaling may take place because the two chains are in proximity to each other. Depending on the concentration of ERP, and assuming that the EPOR preexists as an inactive dimer, ERP may activate just one chain in the inactive dimer. In that case, it is possible that the active conformation of one chain will drive the other chain toward an active conformation, and thereby result in formation of a homodimer receptor conformation, associated with one peptide. The synergy between EPO and ERP could, in that case, be explained by the assumption that EPO binding to such a complex results in a highly stable dimer in its active conformation.
The method to identify receptor agonist or antagonist peptide sequences such as ERP was first reported several years ago (14, 20). To our surprise, the major histocompatibility complex class I-derived peptides (19, 21, 22) were discovered to have significant homology to sequences in the extracellular region of numerous receptors; such regions are almost exclusively close to the cell membrane. For each receptor, a different sequence has been identified (14, 20).
We do not yet understand the evolutionary principles underlying the observations that the
1-domain of major histocompatibility complex class I can be used to identify such receptor sequences, but we do note the generality of our findings. Evidently, the method of homology search is widely applicable; we have applied it successfully to 33 other receptors, including some in the 7-helix family of receptors (unpublished observations). The identification of such extracellular receptor sites with a significant role in regulation of receptor function (and different from the binding site of the natural hormone) are of essential importance for our understanding of molecular and conformational processes during receptor activation and deactivation.
The findings reported here also have important practical implications in drug discovery and in the use of such drugs in novel, receptor-directed pharmacotherapies.
| Acknowledgments |
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| Footnotes |
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Received November 6, 2001.
Accepted for publication February 21, 2002.
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