Endocrinology, doi:10.1210/en.2003-0435
Endocrinology Vol. 144, No. 9 3742-3748
Copyright © 2003 by The Endocrine Society
Circadian Clock Genes and Photoperiodism: Comprehensive Analysis of Clock Gene Expression in the Mediobasal Hypothalamus, the Suprachiasmatic Nucleus, and the Pineal Gland of Japanese Quail under Various Light Schedules
Shinobu Yasuo,
Miwa Watanabe,
Naritoshi Okabayashi,
Shizufumi Ebihara and
Takashi Yoshimura
Division of Biomodeling, Graduate School of Bioagricultural Sciences, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8601, Japan
Address all correspondence and requests for reprints to: Takashi Yoshimura, Ph.D., Division of Biomodeling, Graduate School of Bioagricultural Sciences, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8601, Japan. E-mail: takashiy{at}agr.nagoya-u.ac.jp.
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Abstract
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In birds, the mediobasal hypothalamus (MBH) including the infundibular nucleus, inferior hypothalamic nucleus, and median eminence is considered to be an important center that controls the photoperiodic time measurement. Here we show expression patterns of circadian clock genes in the MBH, putative suprachiasmatic nucleus (SCN), and pineal gland, which constitute the circadian pacemaker under various light schedules. Although expression patterns of clock genes were different between long and short photoperiod in the SCN and pineal gland, the results were not consistent with those under night interruption schedule, which causes testicular growth. These results indicate that different expression patterns of the circadian clock genes in the SCN and pineal gland are not an absolute requirement for encoding and decoding of seasonal information. In contrast, expression patterns of clock genes in the MBH were stable under various light conditions, which enables animals to keep a steady-state photoinducible phase.
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Introduction
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REPRODUCTION OF MANY temperate-zone birds is under photoperiodic control. Although melatonin has an important role for the regulation of the photoperiodic time measurement (PTM) in mammals, no effect of melatonin manipulations is observed in birds (1). Japanese quail is an appropriate model system for the investigation of the PTM because of its rapid and dramatic response to photoperiod. Therefore, a considerable number of studies have been made on Japanese quail over the past few decades. Numerous reports have suggested that the mediobasal hypothalamus (MBH), including the infundibular nucleus (IN), inferior hypothalamic nucleus (IH), and median eminence (ME), is an important center controlling the PTM. For example, lesions of the IN, ME, or nucleus hypothalamicus posterior medialis, also known as nucleus medialis hypothalami posterioris or nucleus ventromedialis hypothalami, within the MBH can block the rise of LH and testicular growth under long photoperiods (2, 3, 4). In the lesion study, block of the photoperiodic response is effective, even though the GnRH system has been left intact (5). In addition, electrical stimulation of the IN and IH increases LH secretion (6) and induces testicular growth (7). Furthermore, Meddle and Follett (8, 9) have shown the expression of Fos-like immunoreactivity in the IN, IH, and ME by photostimulation of one long day.
It is an established fact that the circadian clock is involved in the PTM (10). Recently homologs of mammalian circadian clock genes including Clock, Per2, Per3, Bmal1, Cry1, Cry2, and E4bp4 have been cloned in birds, which provided a way to examine a molecular link between circadian clock and photoperiodism in birds (11, 12, 13, 14, 15, 16).
In the present study, we examined the expression of all known avian circadian clock genes (Clock, Per2, Per3, Bmal1, Cry1, Cry2, and E4bp4) under long days, short days, and night interruption schedules in the MBH, a center for the PTM and putative suprachiasmatic nucleus (SCN), the pineal gland that constitutes the circadian pacemakers (17), to understand the relationship between clock genes and the PTM.
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Materials and Methods
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Animals and housing
Four-week-old Japanese quail (Coturnix coturnix japonica) were obtained from a local dealer and housed in light tight-boxes in which light cycles were provided. The boxes were placed in a room at a temperature of 24 ± 1 C. Birds were maintained under 8:16 h light/dark cycle (LD) to examine the effect of long-day and short-day condition or LD 4:20 cycles to examine the effect of night interruption schedule until the experiment. Light was supplied by fluorescent lamps with a light intensity of 200 lux measured at the level of the birds head. Food and water were available ad libitum and were replenished at least once a week. Animals were treated in accordance with the guidelines of Nagoya University.
Expression patterns of clock genes under long day and short day
We examined the expression of clock genes under short days and long days. In the case of long days, birds were maintained under LD 16:8 for at least 2 wk before sampling, and under short days, they were raised under LD 8:16 from 49 wk of age. We examined expression patterns of clock genes in the MBH, SCN, and pineal gland.
Expression patterns of clock genes under night interruption schedules
Birds were raised under LD 4:20 from 49 wk old and divided into three groups randomly. Light pulses of 30 min were given during the dark periods for 10 consecutive days: group 1, zeitgeber time (ZT) 7 (LDLD 4:3:0.5:16.5); group 2, ZT14 (LDLD 4:10:0.5:9.5); group 3, ZT21 (LDLD 4:17:0.5:2.5). Birds were killed on the d 11 at several time points, and the weight of paired testes was measured. Because activity of animals given light pulses at ZT21 starts from ZT21 (18), we regarded the light pulse at ZT21 as the light onset of the day and compared the results.
In situ hybridization
Birds were killed by decapitation, and the brains were immediately removed to avoid acute changes in gene expression. Sampling was conducted at ZT 2, 6, 10, 14, 18, and 22 in all experiments. In situ hybridization was carried out according to a previous report (11). Antisense 45 mer oligonucleotide probes (qPer2: nucleotides 19041948 of GenBank accession no. AB029890; qPer3: 13821426 of AB029891; qClock: 861905 of AB29889; cBmal1: 5195 of AF205219; cCry1: 17421786 of AY034432; cCry2: 16571701 of AY034433; cE4bp4: 421465 of AF335427) were labeled with [33P]dATP (NEN Life Science Products, Boston, MA) using terminal deoxyribonucleotidyl transferase (Gibco, Frederick, MD). Hybridization was carried out overnight at 42 C. Washing was carried out at room temperature for 30 min and at 55 C for 40 min twice. After washing, they were exposed to Biomax-MR film (Kodak, Rochester, NY) for 2 wk. 14C standards (American Radiolabeled Chemicals, St. Louis, MO) were included in each cassette, and densitometric analysis was carried out using a computed image-analyzing system (MCID, Imaging Research, St. Catherines, Ontario, Canada) to convert signal intensity into the relative OD (ROD). As a background, the ROD of the region of stratum cellulare internum [in cases of the MBH, pineal, and pars tuberalis (PT)] or the nucleus periventricularis magnocelluralis (in cases of the SCN) was measured and subtracted from all RODs.
Statistical analysis
Rhythmicity of each gene expression was analyzed with one-way factorial ANOVA using Fishers least significant difference (LSD) post hoc test (see Figs. 3
, 5
, and 7
). Effect of day length on each genes expression profile was examined by two-way factorial ANOVA (see Figs. 3
and 5A
). When a significant difference was observed using two-way factorial ANOVA (shown by black asterisks), the difference at each time point was analyzed by t test (shown by blue asterisks) (see Figs. 3
and 5A
). Differences between paired testes weight were examined by one-way factorial ANOVA using Fishers LSD post hoc test. Values of each time point under three different light conditions were examined by one-way factorial ANOVA using Fishers LSD post hoc test (see Figs. 5B
and 7
, shown by blue asterisks).

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FIG. 3. Temporal expression profiles of clock genes in the MBH, SCN, and pineal gland under long days (LD 16:8, red open square) and short days (LD 8:16, green closed square). The bar at the bottom of each graph represents the light condition. Significant differences between long and short days revealed by two-way factorial ANOVA (black asterisks, P < 0.05). Difference at each time point is analyzed by t test (blue asterisks, P < 0.05; double blue asterisks, P < 0.01). Each value is the mean ± SEM (n = 36). Note that the scale for each graph is different.
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FIG. 5. Temporal expression patterns of Per2 and E4bp4 in the PT under long and short days (A) and night interruption light schedules (B). The bar at the bottom of each graph represents the light condition. Significant differences between long and short days revealed by two-way factorial ANOVA (black asterisks, P < 0.05). Difference at each time point is analyzed by t test (blue asterisks, P < 0.05). Each value is the mean ± SEM (n = 36). No significant differences were observed between photoinducible light cycles and nonphotoinducible light cycles (one-way factorial ANOVA). Note that the scale for each graph is different.
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FIG. 7. Temporal expression profiles of clock genes in the MBH, SCN, and pineal gland under night interruption light schedules. The light pulse of 30 min was given for 10 d at ZT7 (green up-pointing triangle), ZT14 (red open circle), or ZT21 (green down-pointing triangle) under LD 4:20 cycle. The bar at the bottom of each graph represents the light conditions. Because activity of animals given light pulses at ZT21 starts from ZT21 (18 ), we regard the light pulse at ZT21 as the light onset of the day. Significant differences in mRNA expression between photoinducible light cycle (ZT14) and nonphotoinducible light cycles (ZT7 and ZT21) are shown by asterisks (one-way factorial ANOVA: blue asterisks, P < 0.05; double blue asterisks, P < 0.01). Each value is the mean ± SEM (n = 36). Note that the scale for each graph is different.
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Results
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Localization of clock gene expression in the MBH, SCN, and pineal gland
All clock genes examined in this study (Clock, Per2, Per3, Bmal1, Cry1, Cry2, and E4bp4) were expressed in the MBH including the IN, IH, and ME (Figs. 1
and 2
). In the central to caudal part of the MBH, the expression of the clock genes was observed in the entire part of the IH and IN, and no clear boundary between these nuclei was observed (Fig. 2
, B and C). (Hereafter the region including the IH and IN is designated as the IN-IH.) All genes were also expressed in the PT, which is located just ventral to the ME (only the result of Per2 is shown in Fig. 2
). We also confirmed that all genes were expressed in the SCN and pineal gland (Fig. 1
). Although it is reported that the Per2 gene is expressed in the lateral hypothalamus as well as the SCN in house sparrow (19), we could not detect any signal in this comprehensive analysis, which is consistent with our previous studies (17, 20). Signals were also observed in the cerebellum and the optic tectum.

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FIG. 1. Representative autoradiographs of clock genes expression in the SCN, pineal gland, and MBH in Japanese quail. Samples at ZT6 for Per2, Cry1; ZT2 for Per3, Cry2; ZT10 or 14 for Clock, Bmal1, and E4bp4 were used. Signals were also observed in the cerebellum and optic tectum.
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FIG. 2. Detailed localization of Per2 expression in the MBH. Rostral (A), central (B), and caudal (C) regions of the MBH were shown, respectively. On the left top of each panel, an enlarged picture of the MBH and its schematic drawing are shown, respectively.
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Temporal expression patterns of clock genes in the MBH, SCN, and pineal gland under long and short days
Temporal expression patterns of clock genes in the IN, IH, and ME were examined under long days (LD 16:8) and short days (LD 8:16). Because the expression patterns in the IN-IH and ME were similar, we have shown only the results of the IN-IH and refer to the region as MBH. Under both light cycles, the expression of almost all genes was rhythmic in the MBH (one-way factorial ANOVA, P < 0.05), except for Clock under both light cycles and Cry2 under short days (one-way factorial ANOVA, P > 0.05, Fig. 3
). Per2, Per3, and Cry2 expressions peaked at ZT2, and Bmal1, Cry1, and E4bp4 expressions peaked at ZT10 under long days. Two-way factorial ANOVA failed to find any significant effect of the light conditions on the gene expression of all genes examined in the MBH (Figs. 3
and 4
, n = 36).

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FIG. 4. Per2 mRNA expression in the MBH, pineal gland, and SCN at ZT2 and ZT14 both under long (LD 16:8) and short days (LD 8:16).
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The expression profile of each gene between the SCN and pineal gland was basically the same. In those structures, however, expression patterns (i.e. amplitude, phase angle, wave forms) were different between the two light conditions unlike the MBH (Figs. 3
and 4
). Two-way factorial ANOVA revealed significant differences in the expression of some genes between long and short days (Fig. 3
; P < 0.05, black asterisks, n = 36).
Because the PT is a very small structure, it was difficult to measure the intensity of signals in most genes in this region. However, because the expression of Per2 and E4bp4 was strong enough to be measured, results of these two genes are shown (Fig. 5
). The expression of both genes was rhythmic under both long and short days (one-way factorial ANOVA, P < 0.05, Fig. 5A
, n = 36). The difference in the expression pattern between long and short days was observed in both the Per2 and E4bp4 gene (Fig. 5A
, two-way factorial ANOVA, P < 0.01, black asterisks, n = 36).
Temporal expression patterns of clock genes in the MBH, SCN, and pineal gland under night interruption light schedules
It is reported that a light pulse given within the photosensitive phase induces testicular growth (21). Therefore, we next examined clock genes expression in the MBH, SCN, and pineal gland under the night interruption light schedules. Paired testes weight was significantly increased in birds exposed to a light pulse at ZT14 when compared with those at ZT7 and ZT21 (one-way factorial ANOVA, F(2,69) = 33.27, Fishers LSD test, asterisks P < 0.01), which indicates that ZT14 is within the photoinducible phase as in previous reports (Fig. 6
, n = 2425) (21).

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FIG. 6. Paired testes weight following three patterns of night interruption schedule for 10 d. The light pulse of 30 min were given at ZT7, ZT14, or ZT21 of LD 4:20 cycle. The weight was indicated as the mean of the paired testes weight of all animals in each group. The bar at the bottom of graph represents the light conditions. Asterisk: one-way factorial ANOVA, Fishers LSD test, P < 0.01. Each value is the mean + SEM (n = 2425).
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In the MBH, SCN, and pineal gland, the differences specific to the photoinducible phase were observed in some genes (Fig. 7
: one-way factorial ANOVA; asterisk P < 0.05; double asterisks P < 0.01, n = 36). Among them, the expression of light-sensitive genes such as Per2 and Cry1 in the SCN showed two peaks only in birds exposed to a light pulse at ZT14, and expression level of Clock gene was high in the MBH and pineal gland at several time points (Fig. 7
). Although several other differences specific to the photoinducible phase were observed in this experiment, all the differences did not coincide with the expression patterns under complete long day conditions (Figs. 3
and 7
). In the PT, the difference specific to the photoinducible phase was not observed on Per2 and E4bp4 expression (Fig. 5B
).
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Discussion
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In the present study, we have shown different expression patterns of several clock genes in the SCN and pineal gland between long and short days (prolonged expression of Per2 and Cry1 under long days and phase angle differences of the peak time for Clock, Bmal1, and E4bp4, etc.). However, these differences were not seen under night interruption conditions. Likewise, although there were some differences between photoinducible and nonphotoinducible light cycles under night interruption conditions (two peaks of Per2 and Cry1 in the SCN, high level of Clock, etc.), they did not coincide with the patterns under the complete long and short photoperiods, respectively. Thus, there does not appear to be a unique pattern of temporal clock gene expression rhythms in the SCN and pineal gland associated with photoperiodic response. Because Per2 and Cry1 are known to be light-sensitive genes (11, 13), it is reasonable that expressions of Per2 and Cry1 are prolonged under long days and have second peak by night interruption. However, we do not have a good explanation for the different expression patterns in other genes. Although differences found in the present study are noteworthy, a lesion around the SCN or pinealectomy has no effect on the photoperiodic response of gonad in birds (22, 23). Therefore, functional significance of these differences remains to be clarified. Several groups have shown different circadian clock gene expression under different photoperiods in the SCN and/or PT of hamsters, mice, and ewes and concluded that these differences in clock gene expression may encode and decode the seasonal information in relation with the photoperiodic control of the prolactin secretion (24, 25, 26, 27, 28, 29, 30). Although our results indicated different expression patterns of clock genes under long and short days in the SCN and pineal gland, such differences were not observed in night interruption schedules. It is possible that animals may recognize seasons by different mechanisms between complete photoperiod and incomplete photoperiod (night interruption schedule). However, together with the lesion study, our results indicated that different expression patterns in the circadian pacemaker(s), the SCN and/or pineal gland are not absolute requirements for the PTM, at least in respect of the gonadal response in Japanese quail.
We have shown circadian clock gene expression in the MBH (the IN, IH, and ME). We have also confirmed endogenous expression of circadian clock genes under constant darkness and constant light in the MBH (see supplemental data published on The Endocrine Societys Journals Online web site at http://endo.endojournals.org). This is the first demonstration of the localization of circadian clock in the MBH in which the center regulating the PTM is located. This finding seems to be particularly important because a lesion of the IN and ME blocks photoperiodic response; the immediate early gene expression is photoperiodically induced in the IN, IH, and ME; and now circadian clock, which is required for PTM, are all coincident. In addition, the IN in birds contains extraretinal photoreceptors (31, 32), which are thought to be involved in the photoperiodic light perception (33, 34). This evidence indicates that all the essential machinery for the PTM are localized in the MBH. Interestingly, although photoreceptors are localized in the MBH, expression patterns of clock genes did not appear to be affected by different light conditions. This may indicate that the photoperiodic clock in the MBH remains stable under different photoperiods enabling birds to retain information about temporal changes in light and maintain a photoinducible phase. Light pulses at the photoinducible phase seem to cause some molecular event in the MBH to secrete GnRH. Recently we succeeded in identifying a gene whose expression is induced only by a light pulse at the photoinducible phase in the MBH, and this gene seems to be responsible for the PTM (Yoshimura, T., S. Yasuo, M. Watanabe, T. Yamamura, M. Iigo, K. Hirunagi, A. Nishimura, and S. Ebihara, unpublished observations). Together with the present study, our observation might lead to understanding molecular mechanism of the PTM in birds.
Although in mammals, melatonin is a very important factor controlling the PTM, there is little evidence that melatonin controls the reproductive cycle in birds (1). Recently several researchers focused on the PT because of a great density of melatonin-binding sites in the PT (35), and some differences of the expression pattern of clock genes between long and short days in the PT have been reported (24, 26, 30). In mammals, however, melatonin acts on the PTM in two ways: One involves the regulation of prolactin secretion, and the other involves the LH. The target site of melatonin for lactotropic response is considered to be the PT (35, 36), and that for gonadotropic response is thought to be the MBH (37, 38, 39). It is known that the MBH is the target site for the melatonin action related to LH secretion in mammals (38, 40, 41). In addition, MBH lesions can block the gonadal response to the short photoperiod in Syrian hamsters (39, 42). These reports suggest that the center of mammalian photoperiodic gonadotropic responses is located in the MBH, not in the PT, in the same way as birds, and it may be important to draw attention to the MBH in mammals. The mammalian arcuate nucleus is considered to be the counter part for the avian IN. It is noteworthy that clock genes are expressed in the arcuate nucleus in mice and Syrian hamsters (43, 44). In the present study, we also observed clock gene expression in the PT of Japanese quail. Although expression patterns of Per2 under long and short days were different in the PT, this difference was not observed in night interruption light conditions. The function of these clock genes in the PT remains to be determined. Although IN lesions in Japanese quail result in the block of gonadal development under long days, these lesions do not have effects on the response of prolactin to the long photoperiod (5). Recently similar findings were reported in Syrian hamsters (42). Therefore, it is possible to speculate that the avian PT regulates prolactin secretion as in mammals and that clock gene expression in the PT may contribute to the control of prolactin secretion.
In conclusion, this study describes the expression of circadian clock genes in the SCN, pineal gland, and MBH. Although expression patterns of clock genes were different between long and short photoperiods in the SCN and pineal gland, the results were not consistent with those under night interruption schedules, which cause testicular growth. These results indicate that different expression patterns of clock genes in the circadian pacemakers are not an absolute requirement for encoding and decoding of seasonal information. In contrast, expression patterns of clock genes in the MBH were stable under various light conditions. On the basis of this evidence, we propose that the photoperiodic clock, which might be located in the MBH, enables birds to keep steady-state photoinducible phase for the PTM.
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Acknowledgments
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We thank Nagoya University Radioisotope Center for use of facilities and Dr. T. Okano for providing cCry1 and cCry2 sequence before its availability in GenBank. We also thank Dr. Thomas Vant Hof for helpful discussion.
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Footnotes
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This work was supported by the Program for Promotion of Basic Research Activities for Innovative Biosciences (PROBRAIN), Narishige Zoological Science Award, and Grant-in-Aid for Young Scientist from the Ministry of Education, Culture, Sports, Science, and Technology (to T.Y.) and for Scientific Research (to S.E.).
Abbreviations: IH, Inferior hypothalamic nucleus; IN, infundibular nucleus; LD, light/dark cycle; LSD, least significant difference; MBH, mediobasal hypothalamus; ME, median eminence; PT, pars tuberalis; PTM, photoperiodic time measurement; ROD, relative OD; SCN, suprachiasmatic nucleus; ZT, zeitgeber time.
Received April 8, 2003.
Accepted for publication June 9, 2003.
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