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Department of Biology, Georgia State University, Atlanta, Georgia 30302-4010
Address all correspondence and requests for reprints to: Dr. Chun Jiang, Department of Biology, Georgia State University, 24 Peachtree Center Avenue, Atlanta, Georgia 30302-4010. E-mail: cjiang{at}gsu.edu.
| Abstract |
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| Introduction |
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Although the transgenic and gene-knockout preparations have greatly advanced the understanding of KATP channel functions, several drawbacks have seriously limited applications of these techniques. For instance, such techniques are time-consuming and labor-intensive (13). Sometimes it is impossible to distinguish what produces the phenotype, as the observed systemic consequence can be a result of a loss of function of the targeted gene or a compensatory response of the organism to the lost gene (14). Also, genomic manipulations of certain genes can cause embryonic lethality that prevents establishment of transgenic animals and assessment of gene functions (15). In contrast, these problems can be largely avoided with the catalytic ribozyme techniques that provide an effective alternative in current functional genomic studies (16, 17).
To assess the function of KATP channels in glucose sensing and insulin secretion, we performed experiments by disrupting the pore-forming Kir6.2 subunit using the hammerhead ribozyme-based gene targeting. The effects of the ribozyme treatment on Kir6.2 mRNA, functional KATP channels, and insulin secretion in insulin-secreting RINm5F cells were studied.
| Materials and Methods |
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zukerm) to confirm that the nucleotide sequence at position 233 was accessible for ribozyme cleavage. By homologous recombination, the Kir6.2-ribozyme was transferred from the gateway vector ENTR1A to the adenovirus expression plasmid pAd/CMV/V5-DEST (Invitrogen Life Technologies). The presence of the Kir6.2-ribozyme in the pAd/CMV/V5-DEST vector was confirmed by DNA sequencing and restriction mapping. Similar methods were used to construct the control vector containing green fluorescence protein (GFP) inserted into the ENTR1A vector via two restriction sites, i.e. KpnI and NotI.
Cell culture
The HEK-293A cell line was purchased from Invitrogen Life Technologies, and the RINm5F cells were obtained from American Type Culture Collection (Manassas, VA). The cells were cultured in the DMEM and RPMI 1640 medium, respectively, in the presence of 10% fetal calf serum, 1% penicillin/streptomycin, and 2% glucose. The cells were grown in a humidified incubator containing 5% CO2 at 37 C and were split using 0.05% trypsin-0.02% EDTA (vol/vol) when they became 90% confluent.
Preparation of viral lysate
The amplification of adenoviral stock was produced according to the manufacturers instruction (Invitrogen Life Technologies). The pAd/CMV/V5-DEST plasmid with Kir6.2-ribozyme was digested with the PacI endonuclease to expose the inverted terminal regions. HEK-293A cells at 90% confluence were transfected with the digested plasmid using Lipofectamine 2000 (Invitrogen Life Technologies). The cytopathic effect was observed 1012 d post transfection when the cells were surrendered from further studies. The ribozyme-containing cells were harvested by squirting cells off the dish. To prepare crude viral lysate, cells and media were transferred to a sterile 15-ml capped tube and subjected to several freeze-thaw cycles, followed by centrifugation at 3000 rpm for 15 min. The viral stock was then placed at 80 C. Control studies were performed using the pAd/CMV/V5-DEST vector alone or this vector with the GFP sequence.
Transfection of RINm5F cells with the adenoviral stock
The titer of adenoviral stock was determined by estimating plaque-forming units (pfu) after the transfection of HEK293 cells (21). The titers of the Kir6.2-ribozyme plasmid, GFP control plasmid, and vector alone were about 1 x 108 pfu/ml. RINm5F cells (
3 x 106 cells/dish) were treated with two different doses of the Kir6.2-ribozyme plasmid [2 x 106and 8 x 106 pfu/dish, corresponding to multiplicities of infection (moi) of 0.7 and 2.7, respectively]. Similarly, RINm5F cells were transfected with the GFP control plasmid or vector only in 8 x 106 pfu/dish. The transfected cells were incubated at 37 C for 24 h to allow the expression of Kir6.2-ribozyme and GFP.
Northern blot analysis
The total RNA was isolated from RINm5F cells treated with the Kir6.2-ribozyme and pAd/CMV/V5-DEST vector alone with the RNeasy kit as recommended by the supplier (Qiagen, Valencia, CA; see online Fig. 1
). About 3 x 106 cells were used for each preparation. The riboprobe (202 bp) for the Kir6.2 mRNA was designed to cover a fragment of the 5'-untranslated region (5'UTR) beginning 119 bp upstream of the start codon (ATG) and ending 83 bp in the open reading frame of the Kir6.2 transcript, in which the lowest sequence similarity to other inward rectifier K+ channels was found. The single-strand riboprobe was synthesized using an in vitro transcription kit (Roche, Indianapolis, IN) and was labeled with alkaline phosphatase-coupled digoxigenin (Roche).
For Northern blot analysis, 20 µg total RNA (denatured at 65 C for 10 min) were electrophoresed on a 1.5% agarose gel containing 5% formaldehyde. Equal amounts of RNA were used in different samples, which was further confirmed by equal ethidium bromide stains. The total RNA was blotted onto a nylon membrane (Roche) and then exposed to 50 ng/µl riboprobe. Hybridization was performed in 250 mM sodium phosphate buffer containing 5060% formamide, 250 mM NaCl, and 7% (vol/vol) sodium dodecyl sulfate (SDS) at 68 C for 16 h (pH 7.4). Transcript size calculation was based on the RNA marker (Invitrogen Life Technologies). After hybridization was complete, the membrane was washed twice (10 min each time) at room temperature in low stringency wash buffer (2x standard saline citrate and 0.1% SDS), and then twice (20 min each time) at 68 C in high stringency wash buffer (0.5x standard saline citrate and 0.1% SDS). The membrane was visualized with substrates nitro blue tetrazolium/5-bromo-4-chloro-3-indolyl-phosphate of the alkaline phosphatase.
RT-PCR analysis
Total RNA (4 µg) treated with 2 U deoxyribonuclease at 37 C for 15 min was used to synthesize first-strand cDNAs using random hexamer primers in a 20-µl reaction system. The presence of Kir6.2-ribozyme in the transfected cells was detected with PCR. One primer (5'-GTCCTCACGGACTCATC) targeted at the consensus sequence of the ribozyme, and the other bound to the sequence of the T7 promoter in the pAd/CMV/V5-DEST vector. The PCR products were determined by electrophoresis to be approximately 142 bp.
For detection of the cleavage efficiency of the Kir6.2-ribozyme, another PCR was performed to amplify a 483-bp fragment with a forward primer (5'-ATGCTGTCCCGAAAAGG CTTATCCCTGAGG) and a reverse primer (5'-GGCGTTGATCATTAGCCCTACGATATTC TGC). The PCR products scaling amino acids from the first methionine to Ala161 were analyzed on a 1.0% agarose gel and visualized with ethidium bromide. To assess the variation in first-strand cDNAs, a 842-bp fragment of glyceraldehyde-3-phosphate dehydrogenase (GAPDH) was amplified as an internal control.
Whole-cell patch-clamp
Whole-cell voltage-clamp recording was performed at room temperature as described previously (22, 23). In brief, fire-polished patch pipettes were made from 1.2 mm borosilicate capillary glass (Sutter Instruments, Novato, CA). Tight seals (>1 G
before breaking into the whole-cell mode) were obtained with the transfected cells. The patch electrodes had an open tip resistance of 0.51.0 M
. The series resistance during recording varied from 510 M
and was not compensated. Recordings were terminated whenever a significant increase (>20%) in series resistance occurred. Current records were low pass filtered (2 kHz; Bessel; four-pole filter, 3 dB), digitized (20 kHz, 16-bit resolution), and stored on computer disk for later analysis using the pCLAMP 8 software (Axon Instruments, Foster City, CA). Recordings were performed using solutions containing equal concentrations of K+ applied to the bath and recording pipettes. This solution contained 125 mM potassium gluconate, 10 mM KCl, 1 mM MgCl2, 5 mM EGTA, 2 mM ATP (K+ salt), 10 mM D-glucose, and 10 mM HEPES (pH 7.4). ATP was omitted in the bath solution. Levcromakalim (10 µM) and glibenclamide (10 µM) dissolved in dimethylsulfoxide were sequentially applied to the bath solution.
Insulin secretion
RINm5F cells treated or untreated with Kir6.2-ribozyme were cultured in RPMI 1640 medium. After removal of culture medium, cells were washed twice using a glucose-free Krebs-Ringer bicarbonate (KRB) buffer, followed by a 30-min preincubation with KRB buffer at 37 C. To avoid the loss of cells during sequential supplements with different glucose concentrations, each dish was stimulated with only one glucose concentration for insulin measurement. Insulin secretion was assayed after incubation for 60 min at 37 C using KRB buffer supplemented with 2.8, 5.5, 10.0, 16.7, or 25.0 mM glucose. After glucose stimulation was finished, the medium was collected and centrifuged for 10 min at 5000 rpm, and the supernatant was frozen at 20 C for insulin measurement. The cells were digested with 0.05% trypsin-0.02% EDTA (vol/vol) and centrifuged at 5000 rpm for 5 min. The total cellular DNA was extracted from each dish using the DNeasy tissue kit (Qiagen). Quantitative insulin measurement was conducted using a rat insulin ELISA (Mercodia, Uppsala, Sweden). The insulin concentration was normalized by the DNA levels and expressed as nanograms per microgram of DNA per 60 min.
| Results |
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Inhibition of Kir6.2 expression in RINm5F cells
To determine whether the Kir6.2-ribozyme really produced a disruption of Kir6.2 transcripts, we performed Northern blot and RT-PCR analyses. Experiments were performed on RINm5F cells 3 d post transfection with the Kir6.2-ribozyme. Northern blot analysis of ribozyme function is based upon the cleavage site, i.e. if the ribozyme works effectively, the Kir6.2 mRNA should be cleaved into two fragments at position 233 referring to the start codon, producing two bands of 364 and 1122 bp, respectively (Fig. 2A
). Otherwise, only one band of the full-length (1486 bp) would be seen. Our riboprobe contains the 5'UTR covering from 119 to 83 bp, so that only sequence within this range can bind to the riboprobe and be detected. In fact, the 364-bp fragment and the 1486-bp undigested fragment were stained in RINm5F cells treated with the Kir6.2-ribozyme in 8 x 106 pfu/dish, both of which contained the riboprobe binding sequence. The 1122-bp fragment was not shown because of the lack of riboprobe binding sequence. The 364-bp band was much stronger than the 1486 bp band, although the molecular mass of the cleaved mRNA was much smaller, suggesting that most Kir6.2 mRNA is digested (Fig. 2B
). In contrast, only one 1486-bp band was present in vector-treated control cells (Fig. 2B
).
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Reduction of KATP channel density in Kir6.2-ribozyme-treated RINm5F cells
If the Kir6.2 mRNA is disrupted by the Kir6.2-ribozyme, Kir6.2 gene expression should decrease, leading to a reduction in the density of functional KATP channels in cellular membranes. To test this idea, we studied channel density using whole-cell patch-clamp in the RINm5F cells. Because KATP channels are normally inhibited at physiological concentrations of ATP, we used 10 µM levcromakalim, a KATP channel activator, to reveal the KATP currents. Levcromakalim exposure increased the inward rectifying currents by 536.0 ± 81.8% (n = 12) in RINm5F cells treated with the pAd/CMV/V5-DEST vector alone (Fig. 3A
). At the maximal current activation, 10 µM glibenclamide, a KATP channel blocker, suppressed the inward rectifying currents to the baseline level (99.4 ± 13.8%; n = 21; Fig. 3A
). Kir6.2-ribozyme treatment greatly reduced the currents affected by levcromakalim and glibenclamide (Fig. 3B
). The difference in the maximum vs. minimum currents produced by the KATP channel activator and blocker was normalized by the whole-cell capacitance and used as an index of KATP channel density. Kir6.2-ribozyme treatment markedly reduced channel density, although no significant changes in the baseline currents were found before levcromakalim and glibenclamide exposures. Compared with that of untreated cells, the channel density of Kir6.2-ribozyme treated cells was lowered by approximately 66% [258 ± 27 (n = 12) vs. 88 ± 9 pA/pF (n = 9); Fig. 3C
].
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| Discussion |
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Understanding of the function of KATP channels in the regulation of cellular excitability and insulin secretion was greatly advanced after molecular cloning of the Kir6.2 and SUR1 subunits (4, 5), especially after Kir6.2- and SUR1-gene targetings were carried out in mice (2, 7, 8, 10, 11). Kir6.2-transgenic and Kir6.2-null mice show abnormalities in glucose sensing, insulin secretion, and ß-cell morphology (2, 7, 8, 10, 11), supporting the idea that KATP channels play an important role in ß-cells (25, 26, 27). Interestingly, Kir6.2 genetically engineered mice do not spontaneously develop diabetes even though the glucose-sensing mechanism in ß-cells is seriously impaired (2, 8, 10), suggesting that systemic compensation mechanisms have taken place in these Kir6.2 genetically engineered mice.
The catalytic ribozyme provides an alternative approach to the gene targeting of ß-cell KATP channels. Unlike the genomic approaches, the ribozyme-based gene targeting affects the cells in a short period, which may not allow systemic compensatory mechanisms to take over the lost gene (17). Also, it is much easier to construct the ribozyme vector than to produce transgenic mice, making this approach broadly available for functional genomics. The ribozyme is capable of binding the targeted gene specifically in a sequence-dependent manner and cleaving the target mRNAs only, leading to the inhibition of specific gene expression (17, 28). With the establishment of its efficiency and safety, therapeutic applications for the ribozymes have been attempted in the treatment of cancer and infectious diseases (29, 30).
The hammerhead ribozyme is the smallest ribozyme allowing a wide range of manipulations with available molecular genetic techniques (31, 32). The Kir6.2-ribozyme was designed to specifically and repetitively cleave the Kir6.2 mRNAs at Ser78 and thus breaks the Kir6.2 transcript into two pieces. Using the Mfold program (see Materials and Methods), we have identified several potential cutting sites for the hammerhead ribozyme. Among them, the targeting site at serine 78 showed the least possible secondary structures and thus was chosen in the present study. The disrupted Kir6.2 mRNAs should not produce functional channels, as each of the segments has only one transmembrane domain, assuming that they still could be translated (33, 34, 35). Indeed, our systematic analysis of Kir6.2-ribozyme effects on Kir6.2 mRNAs, functional KATP channels, and insulin secretion from the RINm5F cells indicates that the ribozyme-mediated mRNA disruption is effective and directly proportional to the dose given to the cells. In addition to these technical contributions, our functional assays also show evidence for the role of the KATP channels in insulin-secreting cells and provide additional support to the current theory that the KATP channels act as glucose sensors in pancreatic ß-cells (2, 3).
Because our Kir6.2 gene targeting was designed by taking advantage of the adenoviral expression system that has been widely applied in gene delivery in vivo (36, 37, 38), it is possible to apply the Kir6.2-ribozyme to cultured pancreatic ß-cells and whole-body animals. It is known that the RINm5F cells that were developed from insulinoma are not real ß-cells and may have different glucose-sensing and insulin secretion properties. Before the Kir6.2-ribozyme can be practiced in native ß-cells, therefore, two technical issues need to be addressed. First, the maximal inhibition of the targeted genes is far from complete. We observed about 6070% inhibition of functional KATP channels in single cells treated with the ribozyme. The inhibition of insulin secretion was even lower, ranging from 3040%. Second, the stable expression of the Kir6.2-ribozyme only lasted 34 d in RINm5F cells. Such a narrow window may not allow extensive functional assessments of a gene in whole-body animals. However, these problems should not be overemphasized. Incomplete suppression of the targeted genes is a common characteristic of ribozyme gene targeting as previously documented (39). Although functional assays may require higher levels of suppression of gene expressions, a complete knockout of certain genes may seriously affect cellular activity, which can hinder the assessment of functions of the targeted genes. In this regard, ribozyme-based gene targeting remains an effective approach to knock down, rather than knock out, these genes. Also, there may be another way to overcome the narrow window for stable Kir6.2-ribozyme expression, such as repetitively administering the ribozyme to cells, finding other expression vectors, etc. Clearly, further studies are needed to achieve stable and long-term expression of higher levels of ribozymes in both in vitro and in vivo systems.
In conclusion, we have developed a hammerhead ribozyme targeted at the Kir6.2 mRNAs. Our systematic analysis of its effects on disruption of the Kir6.2 mRNAs, inhibition of KATP channel expression in plasma membranes, and suppression of glucose-induced insulin release in RINm5F cells indicates that this is a promising tool in Kir6.2 gene targeting. These studies also support the idea that KATP channels function as glucose sensors in pancreatic ß-cells, and the proper number of pancreatic ß-cells should be retained to regulate blood glucose levels. We believe that additional studies along this line of research can lead to the design of better approaches to gene targeting for functional genomic assays and more effective therapeutic modalities for the treatment of diabetes and other diseases that remain challenging to modern medicine.
| Acknowledgments |
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| Footnotes |
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Abbreviations: GAPDH, Glyceraldehyde-3-phosphate dehydrogenase; GFP, green fluorescence protein; KATP, ATP-sensitive K+; KRB, Krebs-Ringer bicarbonate; moi, multiplicity of infection; pfu, plaque-forming unit; SDS, sodium dodecyl sulfate; SUR1, sulfonylurea receptor; UTR, untranslated region.
Received March 5, 2004.
Accepted for publication May 20, 2004.
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