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Endocrinology Vol. 146, No. 4 1871-1882
Copyright © 2005 by The Endocrine Society

A Dominant Negative Human Peroxisome Proliferator-Activated Receptor (PPAR){alpha} Is a Constitutive Transcriptional Corepressor and Inhibits Signaling through All PPAR Isoforms

R. K. Semple1, A. Meirhaeghe1, A. J. Vidal-Puig, J. W. R. Schwabe, D. Wiggins, G. F. Gibbons, M. Gurnell, V. K. K. Chatterjee and S. O’Rahilly

Departments of Clinical Biochemistry (R.K.S., A.J.V.-P., S.O.) and Medicine (M.G., V.K.K.C., S.O.), University of Cambridge, Addenbrooke’s Hospital, Cambridge CB2 2QQ, United Kingdom; Institut National de la Santé et de la Recherche Médicale U.508 (A.M.), Institut Pasteur de Lille, 59019 Lille Cedex, France; Metabolic Research Laboratory (D.W., G.F.G.), Oxford Centre for Diabetes, Endocrinology and Metabolism, Nuffield Department of Clinical Medicine, University of Oxford, Churchill Hospital, Oxford OX3 7LJ, United Kingdom; MRC-Laboratory of Molecular Biology (J.W.R.S.), Cambridge CB2 2QH, United Kingdom

Address all correspondence and requests for reprints to: Robert Semple, Department of Clinical Biochemistry, Addenbrooke’s Hospital, Cambridge CB2 2QR, United Kingdom. E-mail: rks16{at}cam.ac.uk.


   Abstract
Top
 Abstract
Introduction
 Materials and Methods
 Results
 Discussion
 References
 
Several missense mutations in the ligand-binding domain of human peroxisome proliferator-activated receptor (PPAR){gamma} have been described in subjects with dominantly inherited severe insulin resistance associated with partial lipodystrophy, hypertension, and dyslipidemia. These mutant receptors behave as dominant-negative inhibitors of PPAR{gamma} signaling when studied in transfected cells. The extent to which such dominant-negative effects extend to signaling through other coexpressed PPAR isoforms has not been evaluated. To examine these issues further, we have created a PPAR{alpha} mutant harboring twin substitutions, Leu459Ala and Glu462Ala, within the ligand binding domain (PPAR{alpha}mut), examined its signaling properties, and compared the effects of dominant-negative PPAR{alpha} and PPAR{gamma} mutants on basal and ligand-induced gene transcription in adipocytes and hepatocytes. PPAR{alpha}mut was transcriptionally inactive, repressed basal activity from a PPAR response element-containing promoter, inhibited the coactivator function of cotransfected PPAR-{gamma} coactivator 1{alpha}, and strongly inhibited the transcriptional response to cotransfected wild-type receptor. In contrast to PPAR{gamma}, wild-type PPAR{alpha} failed to recruit the transcriptional corepressors NCoR and SMRT. However, PPAR{alpha}mut avidly recruited these corepressors in a ligand-dissociable manner. In hepatocytes and adipocytes, both PPAR{alpha}mut and the corresponding PPAR{gamma} mutant were capable of inhibiting the expression of genes primarily regulated by PPAR{alpha}, -{gamma}, or -{delta} ligands, albeit with some differences in potency. Thus, dominant-negative forms of PPAR{alpha} and PPAR{gamma} are capable of interfering with PPAR signaling in a manner that is not wholly restricted to their cognate target genes. These findings may have implications for the pathogenesis of human syndromes resulting from mutations in this family of transcription factors.


   Introduction
Top
 Abstract
 Introduction
Materials and Methods
 Results
 Discussion
 References
 
NATURALLY OCCURRING MUTATIONS in the nuclear hormone receptor peroxisome proliferator- activated receptor (PPAR){gamma} are now well established as the cause of a stereotyped human syndrome of severe insulin resistance, partial lipodystrophy, hypertension, and dyslipidemia, often manifesting in women as polycystic ovary syndrome and preeclampsia (1, 2). The majority of mutations (mut) reported to date lie within the ligand-binding domain (LBD) of the receptor and, when studied in vitro, exhibit dominant-negative activity when coexpressed with their wild-type (wt) counterpart (3, 4). The molecular basis of the dominant-negative activity of mutations in the PPAR{gamma} LBD has been most closely examined in relation to an artificial double-mutant receptor (Leu468Ala/Glu471Ala) (5). This receptor was found to bind DNA and heterodimerize with retinoid X receptor (RXR) normally. Its marked dominant-negative activity reflected aberrant interaction with nuclear receptor coregulators: release of corepressor molecules such as nuclear receptor corepressor (NCoR) and silencing mediator of retinoid and thyroid receptors (SMRT) was impaired, whereas the ligand-induced recruitment of coactivators such as cAMP response element-binding protein was also greatly diminished. Similar findings have more recently been reported for two of the naturally occurring PPAR{gamma} mutants (3). It is notable that no naturally occurring mutations within other PPAR isoforms ({alpha} and {delta}) have yet been reported.

We have now elected to investigate whether equivalent mutations in another PPAR isoform would also result in a dominant-negative receptor and, if so, determine whether they would do so through entirely analogous molecular mechanisms. Thus, we first created the corresponding mutations in PPAR{alpha} to those described previously for PPAR{gamma} and examined the signaling properties of the mutant receptor in detail. In transient transfection assays using an artificial PPAR response element reporter gene construct, we demonstrated that the dominant-negative mutant PPAR{alpha} failed to mediate ligand-induced transcriptional activation and moreover interfered with the action of not only PPAR{alpha}-specific ligands acting through cotransfected wild-type PPAR{alpha} but also a PPAR{gamma}-specific ligand and a PPAR{delta}-specific ligand acting through their cognate receptors.

The availability of dominant-negative mutants of both PPAR{alpha} and PPAR{gamma}, which could be adenovirally transduced into differentiated cells, allowed us to extend our investigation of the specificity of dominant-negative activity within this receptor family. By adenovirally transducing adipocyte and hepatocyte cell lines with either the PPAR{gamma} or PPAR{alpha} dominant-negative receptors and examining their effects on basal and ligand-induced transcription of canonical target genes for each PPAR isoform, we demonstrated that cross-inhibition of PPAR signaling is also seen for transcriptional responses mediated by endogenous PPARs.

The physiological relevance of these observations is unclear, but if such cross-inhibition occurs in vivo, this suggests that the metabolic syndrome seen in humans with PPAR{gamma} dominant-negative mutations might represent the composite effects of the receptor mutants on signaling through more than one coexpressed isoform of PPAR{gamma}.


   Materials and Methods
Top
 Abstract
 Introduction
 Materials and Methods
Results
 Discussion
 References
 
Plasmid constructs
The full-length human PPAR{alpha} cDNA was cloned by RT-PCR from total HepG2 cell RNA using the following oligonucleotides: sense, 5'-CAG GGT ACC ACC ATG GAC TAC AAA GAC GAT GAC GAC AAG ATG GTG GAC ACG GAA AGC CCA CTC T-3', and antisense, 5'-TGG CGG CCG CTC AGT ACA TGT CCC TGT AGA TCT CC-3'. The sense oligonucleotide contained a Kozak translation signal (ACCATG) and a FLAG epitope (MDYKDDDDK residues). An amplicon of 1450 bp was obtained after 30 cycles (94 C for 1 min, 63 C for 1 min, and 72 C for 1 min 30 sec) with a 1:1 ratio of pfu turbo (Stratagene, La Jolla, CA)/AmpliTaq Gold (PerkinElmer, Norwalk, CT). The PCR product was purified and cloned into pcDNA3.1 (+) (Invitrogen, Paisley, UK) using the KpnI and NotI restriction sites, making pcDNA3-PPAR{alpha}wt. The insert was sequenced to confirm its integrity.

The leucine and glutamate at positions 459 and 462, respectively, were mutated into alanine by PCR site-directed mutagenesis using the Quickchange kit (Stratagene) according to the supplier’s instructions with the following oligonucleotides: sense, 5'-GCT GCG CTG CAC CCG GCA CTG CAG GCG ATC TAC AGG GAC ATG-3', and antisense, 5'-CAT GTC CCT GTA GAT CGC CTG CAG TGC CGG GTG CAG CGC AGC-3' (mutations underlined). After confirmation by direct sequencing, the insert was double digested with KpnI and NotI and ligated into empty pcDNA3.1 (+) vector between KpnI and NotI sites.

The hinge region and LBD (amino acids 167–468) of PPAR{alpha}wt and PPAR{alpha}mut were amplified using the following oligonucleotides: sense, 5'-CAT GAA TTC TCA CAC AAC GCG ATT CGT TT3–3' and antisense 5'-CAC GAA TTC TCA GTA CAT GTC CCT GTA GAT-3' from pcDNA3-PPAR{alpha}wt and pcDNA3-PPAR{alpha}mut, and the PCR product (909 bp) was cloned into the EcoRI site of AASV-VP16 vector to give VP16-PPAR{alpha}wt LBD and VP16-PPAR{alpha}mut LBD. The L468A/E471A PPAR{gamma} double mutant, human PPAR{gamma}2, Gal4-NCoR, and Gal4-SMRT (5); peroxisome proliferator response element (PPRE)3-TKLUC (6); UASTKLUC (7); CRBPIITKLUC (8); MALTKLUC, RSV-TRß1, and RSV-RXR{alpha} (9); retinoic acid receptor (RAR)ß2TKLUC and RSV-RAR{alpha}1 (10) constructs have been described previously. The PcDNA3-PPAR{delta} has been described previously (11) and was a gift from Dr. R. Vogel (Merck, Whitehouse Station, NJ). The hemagglutinin-tagged human PPAR-{gamma} coactivator 1 (PGC1){alpha} plasmid was a gift from Dr. A. Kralli (University of Basel, Basel, Switzerland).

Transfection assays
HepG2 cells were maintained in DMEM containing 4.5 g glucose/liter (Sigma, Poole, UK) supplemented with 10% fetal bovine serum (FBS) and penicillin/streptomycin. Cells were split into 24- or 96-well plates and transfected 8 h later in the same medium using Fugene (Roche, Stockholm, Sweden). A ratio of 3 µl Fugene to 1 µg DNA was used for all transfections. The transfection efficiency was estimated by cotransfecting the vector pRL-cytomegalovirus (CMV) (Promega, Southampton, UK) encoding the Renilla luciferase gene. Fifteen hours after transfection, the medium was removed, the cells were washed once with PBS, and fresh medium containing the relevant ligand added for 30 h. The cells were then harvested and both Firefly and Renilla luciferase activities were measured in 20 µl of lysate according to the manufacturer’s instructions (dual luciferase assay, Promega). The following specific ligands were used: PPAR{alpha}-GW7647 (12) (Sigma), RXR{alpha}-LG100268 (13) (a gift from Mark Leibowitz, Ligand Pharmaceuticals, San Diego, CA), PPAR{gamma}-BRL49653 (14) (Alexis, San Diego, CA), and PPAR{delta}-L165041 (15) (a gift from Dr. D. Moller, Merck).

Recombinant adenovirus construction
The PPAR{alpha}mut recombinant adenovirus was created using the AdEAsy kit according to the supplier’s instructions (QBiogene, France). Briefly, the human PPAR{alpha}mut cDNA was cloned into pShuttle-CMV between KpnI and NotI restriction sites. The vector was linearized with PmeI and cotransformed with the pAdEasy-1 vector into BJ5183 competent cells by electroporation to effect recombination between the two vectors. Recombinants were then digested with BstXI. DH5{alpha} cells were transformed with one positive recombinant clone, and DNA was extracted using the large-construct maxiprep kit (Qiagen, West Sussex, UK). Direct sequencing was used to verify the integrity of the cDNA and the presence of the mutations. The DNA was linearized with PacI and QBI-293A cells plated in 6-well plates with agarose-DMEM overlay were infected with the viral DNA to produce viral particles. Plaques appeared after 14 d and were picked and transferred onto fresh QBI-293A cells. Cytopathic effect (CPE) started to appear after 8 d. A second round of amplification was performed and CPE was complete after 4 d. The viral particles were released by three cycles of freezing/thawing and large-scale amplification performed by QBiogene (Canada).

Use of recombinant adenovirus in cultured cells
Male Wistar rats, fed and housed as described previously (16), were used for the preparation of hepatocytes when they weighed between 200 and 300 g. Hepatocytes were prepared under sterile conditions (17) and were suspended [(0.75–1.0) x 106 cells/ml)] in Waymouth’s medium MB752/1 supplemented with amino acids, antibiotics, and 10% (vol/vol) heat-inactivated FBS. Then 3.0 ml of this suspension was added to culture dishes coated with rat-tail collagen, and after 3 h, the cells became attached as a monolayer. The medium was removed and the cells were washed twice with 3.0ml PBS before addition of 3.0 ml serum-free Waymouth’s medium supplemented with amino acids, antibiotics, 1 µM dexamethasone, 1 mM pyruvate, and 10 mM lactate (supplemented medium). To each plate was added adenoviral storage buffer, green fluorescent protein (GFP)-expressing adenovirus, or PPAR{alpha}mut-expressing adenovirus. Plaque-forming units (PFUs) of each virus (1.26 x 108) were used per plate, giving a multiplicity of infection (MOI) of approximately 60 PFU/cell, in line with previous publications. After 3 h of incubation in virus-containing medium, the cells were washed twice with PBS before addition of supplemented medium containing the relevant concentration of PPAR{alpha} agonist GW7647 or dimethylsulfoxide. After 16 h RNA was extracted from the cells using the RNEasy kit (Qiagen).

HepG2 experiments were carried out in DMEM containing 4.5 g/liter glucose (Sigma) supplemented with 10% FBS and antibiotics in 12-well plates. Adenoviral vector or vehicle (5 x 106 PFU) was added per well (MOI around 20 PFU/cell), and cells were incubated for 12 h before washing with PBS and replacement with medium containing GW7647 or dimethylsulfoxide. At this stage, infection rates of greater than 95% for the GFP and GFP/PPAR{gamma}mut viruses were verified by fluorescence microscopy of the living cells. After 48 h RNA was extracted using the RNEasy kit.

3T3-L1 preadipocytes (American Type Culture Collection, Manassas, Va) were maintained at less than 70% confluence in DMEM containing 4.5 g/liter glucose supplemented with 10% newborn calf serum, penicillin/streptomycin, and 2 mM glutamine (all Sigma). For each experiment, cells were seeded into 12-well plates and grown until 2 d post confluence. Differentiation medium consisted of the FBS-containing medium supplemented with insulin (5 µg/ml), dexamethasone (0.1 µg/ml), and 3-isobutyl-1-methylxanthine (110 µg/ml). Where cells were to be fully differentiated, this was replaced after 3 d by the FBS-containing medium supplemented with insulin (5 µg/ml) alone and after a further 3 d by the FBS-containing medium alone. A pilot study to assess the validity of adipocyte fatty acid binding protein 4 (aP2) as a specific transcriptional target of PPAR{gamma} in 3T3-L1 preadipocytes was carried out. The cells were induced to differentiate in the presence of BRL49653or vehicle and RT-PCR used to quantify mRNA levels aP2. In comparison with differentiation medium (DM) alone, BRL49653plus DM resulted in a more than 20-fold increase in aP2 mRNA levels at 48 h. Thus, BRL49653stimulation concomitant with the first 2 d of differentiation was chosen to test the effect of the mutant PPARs. For adenovirus experiments, cells at 2 d post confluence were exposed to maintenance medium containing either adenoviral storage buffer or 2 x 109 PFU of adenovirus per well (MOI around 5000 PFU/cell unless otherwise indicated) for 12 h with agitation. Adenovirus-expressing GFP alone (QBiogene) was used to assess infection rates in conjunction with fluorescence microscopy. The monolayers were then washed with PBS, and cells were incubated in DM containing different concentrations of BRL49653for 48 h before RNA extraction using the RNEasy kit (Qiagen). Oil Red O staining employing a standard protocol was used to assess differentiation in those experiments in which cells were differentiated for 12 d.

Real-time quantitative PCR
On the basis of published work, we identified peroxisomal fatty acyl-coenzyme A oxidase (pFAO), pyruvate dehydrogenase kinase (PDK) 4 and cytochrome IVA1 as robustly responsive targets of PPAR{alpha} in rat liver and PDK4 and liver type carnitine palmitoyl transferase 1 (CPT1) as targets in human liver and derived cell lines. Primer Express software (version 1.0, PerkinElmer Applied Biosystems, Foster City, CA) was used to design the probes and primers for real-time quantitative PCR shown in Table 1Go. Five hundred nanograms of total RNA was reverse transcribed for 1 h at 37 C in a 20-µl reaction including 1 x reverse transcription buffer and 100 U Moloney murine leukemia virus reverse transcriptase, 250 ng random hexamers, 1.25 mmol/liter deoxynucleotide triphosphates (all Promega), and the solution was made up to 100 µl. Two microliters of the resulting cDNA were used in each 25 µl PCR, in which 300 nmol/liter of forward and reverse primers and 150 nmol/liter of fluorogenic probe were used. Reactions were carried out at least in duplicate for each sample on an ABI 7700 sequence detection system (PerkinElmer Biosystems) according to the manufacturer’s instructions, and target values were normalized to either glyceraldehyde-3-phosphate dehydrogenase (GAPDH) or 18S rRNA as indicated (rodent and human reagents from PerkinElmer).


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  		TABLE 1. Sequences of primers and probes used for quantitative real-time PCR

 

   Results
Top
 Abstract
 Introduction
 Materials and Methods
 Results
Discussion
 References
 
Figure 1Go shows the amino acid sequence comparison of the distal LBD of human, rat, and Xenopus PPARs. The leucine and glutamate residues that confer on human PPAR{gamma} dominant-negative activity when mutated into alanine (5) are conserved in all homologs shown. Therefore, we decided to apply this mutational strategy to create a dominant-negative mutant of PPAR{alpha}. Thus, wild-type PPAR{alpha} cDNA was amplified and cloned from HepG2 cell cDNA, and Leu459 and Glu462 were replaced by alanine using site-directed mutagenesis to create PPAR{alpha}mut.



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  		FIG. 1. C-terminal 141 amino acids of PPAR{alpha}, -{gamma}, and -{delta} from human (h), rat (r), and Xenopus (x). Human PPAR{alpha} residues L459 and E462 (mutated to alanine) and their equivalents in the other PPARs are shaded, and residues conserved in all species are underlined.

 
The transcriptional activity of PPAR{alpha}mut was then investigated by cotransfecting HepG2 cells with expression vectors encoding RXR{alpha}, PPAR{alpha}wt, or PPAR{alpha}mut and a reporter construct consisting of three copies of the PPRE of the acyl-coenzyme A oxidase gene coupled to the Firefly luciferase gene (PPRE3-TKLUC), with the Renilla luciferase vector as a transfection control. In the presence of 100 nM GW7647 and LG100268, PPAR{alpha}wt induced luciferase activity by 4-fold (Fig. 2AGo). The PPAR{alpha}mut, in contrast, exhibited intense suppression of both basal (Fig. 2AGo, inset) and ligand-stimulated transcription (Fig. 2AGo). Ligand dose response testing (Fig. 2BGo) confirmed the complete inability of PPAR{alpha}mut to mediate a transcriptional response to ligand. Thus, the introduction of the two mutations in the ligand-binding domain of PPAR{alpha} was sufficient to abolish its transactivation capacity.



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  		FIG. 2. Transcriptional activity of PPAR{alpha}wt and PPAR{alpha}mut. HepG2cells were transfected with 300 ng pcDNA3.1, pcDNA3-PPAR{alpha}wt, or pcDNA3-PPAR{alpha}mut, together with 300 ng RSV-hRXR{alpha}, 60 ng PPRE3-TKLUC reporter, and 20 ng pRL-CMV. The activity is expressed relative to the wild-type maximum (100%): with 100 nM of both GW7647 and L165041 (A) or vehicle (open bars). Inset, Detail of baseline levels.*, P < 0.05; **, P < 0.01 (two-tailed Student’s t test). B, Dose response of reporter activity to equimolar GW7647 and L165041. Results are the mean ± SD of five experiments in duplicate.

 
Recruitment of transcriptional coregulators
To elucidate the mechanism of this loss of function, we went on to examine the interactions of PPAR{alpha}mut with a panel of transcriptional coregulator molecules. First, corepressor recruitment by PPAR{alpha}wt and PPAR{alpha}mut was assessed in a mammalian two-hybrid assay using the receptor-interacting domains of SMRT and NCoR fused to the Gal4 DNA binding domain (DBD) and the LBD of PPAR{alpha}wt or PPAR{alpha}mut fused to the activation domain of VP16 (Fig. 3Go). HepG2 cells were cotransfected with the Gal4-corepressor chimera, together with either the wild-type or mutant fusion construct and the UAS-TKLUC reporter. In the case of the wild-type receptor, recruitment of neither NCoR (Fig. 3AGo) nor SMRT (Fig. 3BGo) could be detected. However, in marked contrast, the PPAR{alpha}mut LBD was able to recruit either NCoR or SMRT in the unliganded state and release them in a dose-dependent manner after addition of GW7647.



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  		FIG. 3. Mammalian two-hybrid assay with nuclear receptor interaction domains of NCoR (A) and SMRT (B). HepG2 cells were transfected with 100 ng of vectors encoding VP16 only, VP16 fused to the wild-type PPAR{alpha} LBD (VP16-LBDwt), or VP16 fused to the double-mutant PPAR{alpha} LBD (VP16-LBDmut) together with 100 ng of expression vector encoding the Gal4 DBD fused to the nuclear receptor interaction domains of NCoR (Gal4-NCoR) (A) or SMRT (Gal4-SMRT) (B) and 500 ng of the reporter construct UASTKLUC, with results normalized to Renilla luciferase activity as previously described. The dose response of reporter activity to GW7647 is shown. The activity is expressed relative to the maximum obtained for PPAR{alpha}mut in the absence of ligand (100%). Results are the mean ± SD of four experiments in duplicate.

 
Second, we explored the capacity of a known nuclear receptor coactivator to potentiate transcriptional activation by PPAR{alpha}wt and PPAR{alpha}mut. HepG2 cells were cotransfected with PPAR{alpha}wt or PPAR{alpha}mut plasmids, the PPRE3-TKLUC reporter plasmid, and incremental amounts of hemagglutinin-tagged hPGC1{alpha} expression vector and stimulated with ligand, with results normalized to Renilla luciferase activity. A clear dose response of reporter activity to increasing amounts of hPGC1{alpha} was observed both in the presence of the reporter plasmid alone (in which case endogenous PPAR expression presumably accounts for the transcriptional activity) and with overexpressed PPAR{alpha}wt, although it should be noted that basal activity was much higher in the presence of exogenous receptor (Fig. 4Go). Similar but enhanced transactivation profiles were recorded after the addition of GW7647. Strikingly, the presence of PPAR{alpha}mut virtually abolished transcriptional activity at all concentrations of PGC1{alpha} and ligand (Fig. 4Go).



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  		FIG. 4. Suppression of PGC1{alpha}-mediated transcriptional activation by PPAR{alpha}mut. HepG2 cells in 96-well plates were cotransfected with 8 ng PPRE3-TKLUC, 3 ng of either pcDNA3-PPAR{alpha}wt or pcDNA3-PPAR{alpha}mut, increasing amounts of plasmid encoding hemagglutinin-tagged human PGC1{alpha} as shown, and empty pcDNA3.1 (vector) to balance the total amounts of transfected DNA. Results were normalized to Renilla luciferase activity, and results are the mean ± SD of three experiments, expressed as percentages of the maximal recorded transcriptional activity. DMSO, Dimethylsulfoxide.

 
Dominant-negative activity of PPAR{alpha}mut
To evaluate the possible dominant-negative activity of the mutant, HepG2 cells were cotransfected with either PPAR{alpha}wt or PPAR{alpha}wt and PPAR{alpha}mut (Fig. 5Go). The addition of PPAR{alpha}mut reduced the ability of PPAR{alpha}wt to transactivate the luciferase gene by 50%, demonstrating that the mutant possesses dominant-negative activity (Fig. 5AGo). This effect shows dose responsiveness, with a 75% reduction of activity seen with a 10-fold excess of mutant.



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  		FIG. 5. Dominant-negative activity of PPAR{alpha}mut over PPAR{alpha}wt (A), PPAR{gamma} (B), and PPAR{delta} (C). A, HepG2 cells were transfected with 600 ng pcDNA3-PPAR{alpha}wt or 300 ng pcDNA3-PPAR{alpha}wt plus 300 ng or 3000 ng pcDNA3-PPAR{alpha}mut as indicated. In all cases 60 ng PPRE3-TKLUC and 20 ng pRL-CMV were cotransfected with pcDNA3.1 to equalize the total amounts of transfected DNA. Three hundred nanograms pcDNA3-PPAR{alpha}wt had previously been established to give the same transcriptional activity as 600 ng. Dose responses of reporter activity to GW7647 are shown, the activity being expressed relative to the wild-type maximum obtained with 100 nM GW7647 (100%). B is the same as for A but with pcDNA3-PPAR{gamma}wt, and BRL49653as ligand. C is the same as for A but with pcDNA3-PPAR{delta}, and L165041 as ligand. Results were normalized to Renilla luciferase activity, and results are the mean ± SD of five experiments (A and B) or three experiments (C), expressed as percentages of the transcriptional activity in response to 100 nM ligand.

 
We also tested the effect of the PPAR{alpha}mut on PPAR{gamma}-mediated transcription. The presence of the thiazolidinedione ligand BRL49653at 100 nM resulted in an 8-fold activation of luciferase activity (Fig. 5BGo). However, addition of equimolar PPAR{alpha}mut was associated with a 75% decrease in PPAR{gamma}-mediated transcriptional activity at 100 nM BRL49653 Further suppression was again seen with a 10-fold excess of mutant. Using the same reporter construct, we also demonstrated potent dominant-negative activity of the mutant PPAR{alpha} over PPAR{delta} (Fig. 5CGo). Thus, in this cotransfection system, there appears to be no selectivity of the inhibitory effect of the PPAR{alpha}mut construct for PPAR{alpha}-mediated over PPAR{gamma}- and PPAR{delta}-mediated transcriptional activation, albeit in the context of an artificial, minimal PPRE-containing promoter.

To assess whether the dominant-negative activity of the mutant construct is selective or specific for PPAR-mediated responses, we also investigated the effect of coexpressing PPAR{alpha}mut with other nuclear hormone receptors in the presence and absence of their specific ligand. Expression of PPAR{alpha}mut either at the same level or in 5-fold excess had no significant effect on robust transcriptional responses mediated by RAR{alpha}, thyroid hormone receptor ß1, or RXR{alpha} in the presence of their cognate ligands, suggesting that its powerful dominant-negative activity is selective for PPAR-mediated responses (Fig. 6Go).



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  		FIG. 6. Selectivity of dominant-negative activity of PPAR{alpha}mut in vitro. HepG2 cells in 96-well plates were transfected with reporter plasmid and nuclear receptor-encoding plasmid as shown with or without an equal amount or 5-fold excess of cotransfected pcDNA3-PPAR{alpha}mut. In all cases 3 ng pRL-CMV were cotransfected, and empty pcDNA3.1 was added to equalize amounts of transfected DNA. Reporter responses to specific ligand (as shown) were assayed, and results are the mean ± SD of three experiments, normalized to the baseline activity seen in the absence of overexpressed nuclear receptor in eachcase. A, RXR{alpha}; B, thyroid hormone receptor (TR)ß1; C, RAR{alpha}1. ATRA, All-trans-retinoic acid.

 
Effect of PPAR{alpha}mut adenoviral expression on native PPAR-responsive genes
Because the PPAR-dependent promoter used hitherto was artificial and possibly unrepresentative of isoform-specific PPAR-driven responses in living cells, we went on to look at the effect of PPAR{alpha}mut expression on well-characterized canonical PPAR-mediated responses in primary rat hepatocytes, HepG2 cells, and murine 3T3-L1 preadipocytes. To this end, we created an adenovirus-based expression vector encoding the PPAR{alpha}mut cDNA and compared its ability to inhibit PPAR-mediated responses with the inhibitory activity of a previously described PPAR{gamma}mut/GFP-coexpressing adenovirus (5). Cells in culture were infected with vehicle, a GFP-expressing adenovirus, PPAR{alpha}mut-expressing adenovirus, or GFP/PPAR{gamma}mut-expressing adenovirus under conditions that have been optimized to permit high levels of infection. The infected cells were subsequently exposed to a range of ligand concentrations (PPAR{alpha}-GW7647, PPAR{gamma}-BRL49653, PPAR{delta}-L165041), and PPAR target gene mRNA expression was assessed by real-time quantitative PCR.

In rat hepatocytes, PDK4 showed a steep dose-dependent response to PPAR{alpha} agonist (GW7647) in both uninfected cells and cells infected with GFP-expressing virus, with a 15- to 20-fold induction of mRNA levels (Fig. 7AGo). In the presence of the PPAR{alpha}mut, not only was induction of expression ablated, but there was also baseline suppression of PDK4 mRNA levels, and indeed they did not approach the uninfected baseline until very high concentrations of ligand were added (Fig. 7AGo). The PPAR{gamma}mut adenovirus also significantly attenuated the response to the PPAR{alpha} agonist but to a lesser degree: no suppression of baseline activity was seen, and the peak stimulation of mRNA expression was around 3-fold. Similar patterns were seen for pFAO (fig 7BGo) and CYPIVA1 (data not shown), although the degree of induction of mRNA was less (8- to 10-fold).



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  		FIG. 7. Effect of PPAR{alpha}mut or PPAR{gamma}mut on endogenous PPAR{alpha} target genes in primary rat hepatocytes. Primary rat hepatocytes were infected with adenovirus expressing GFP (Ad-GFP), PPAR{alpha}mut (Ad-{alpha}mut), or PPAR{gamma}mut and GFP (Ad-{gamma}mut) before stimulation by 16 h of exposure to different concentrations of GW7647, after which mRNA levels of PDK4 (A) or pFAO (B) were measured by RT-PCR and normalized to GAPDH mRNA levels. Representative experiments from three are shown, with error bars representing the SD of duplicates of RT-PCR.

 
In HepG2 cells, addition of PPAR{alpha} agonist GW7647 resulted in modest induction of CPT1 (Fig. 8AGo) and strong induction of PDK4 (Fig. 8BGo). In both cases, PPAR{alpha}mut and PPAR{gamma}mut attenuated this, most markedly in the case of PDK4 with, once again, a more robust effect seen with the PPAR{alpha}mut-expressing virus.



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  		FIG. 8. Effect of PPAR{alpha}mut or PPAR{gamma}mut on endogenous PPAR{alpha} target genes in HepG2 cells. HepG2 cells were infected with Ad-{alpha}mut, Ad-GFP, or Ad-{gamma}mut and then exposed to GW7647 for 48 h before measurement of PDK4 (A) and CPT1 (B) mRNA levels by quantitative RT-PCR, normalized to GAPDH. The means of three experiments are shown, with error bars representing the SD.

 
Next, to determine whether the adenoviral constructs were equally capable of attenuating the responsiveness of selective PPAR{gamma} target genes, we turned to the murine 3T3-L1 preadipocyte cell line. Preliminary experiments established that addition of 100 nM BRL49653to standard proadipogenic DM for 48 h resulted in a 20-fold greater increase in mRNA levels of aP2 than with DM alone, which we thus regarded as a robust PPAR{gamma}-specific response against which to test the effects of the mutant constructs. This response was dramatically attenuated in the presence of either the PPAR{alpha}mut or PPAR{gamma}mut, with the PPAR{alpha}mut once again exhibiting a greater effect (Fig. 9AGo). A correlate of this was seen in the failure of 3T3-L1 cells infected with either construct to accumulate lipid in response to standard differentiation conditions (Fig. 9CGo) (5).



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  		FIG. 9. Effect of PPAR{alpha}mut or PPAR{gamma}mut on endogenous PPAR{gamma} and PPAR{delta} target genes. A, Two-day postconfluent 3T3-L1 preadipocytes were infected with Ad-{alpha}mut, Ad-GFP, or Ad-{gamma}mut for 12 h before 48 h of exposure to adipogenic DM and different concentrations of BRL49653 aP2 mRNA levels were then determined by quantitative real-time PCR and normalized to 18S rRNA levels. B, HepG2 cells were infected with Ad-{alpha}mut, Ad-GFP, or Ad-{gamma}mut and then exposed to GW7647 for 48 h before measurement of PDK4 mRNA levels by quantitative RT-PCR, normalized to GAPDH. The means of three experiments are shown, with error bars representing the SD. C, Two-day postconfluent 3T3-L1 preadipocytes were infected with no adenovirus, Ad-GFP, or Ad-{alpha}mut at the range of MOIs shown before adipogenic differentiation as described using a standard protocol. Lipid accumulation was assessed by staining with oil Red O at d 10. Representative images are shown. Maximal infection rates of 90% were achieved at an MOI of 109 Ad-GFP PFU per well (not shown).

 
Because PDK4 has been shown previously to be a robustly responsive gene to PPAR{delta} stimulation as well as PPAR{alpha} stimulation (18), we finally tested the effect of adenoviral overexpression of either PPAR{alpha}mut or PPAR{gamma}mut in HepG2 cells on this response. Both mutant receptors were found to inhibit the response of PDK4 to stimulation with the specific PPAR{delta} agonist L165041 (Fig. 9BGo), suggesting that the dominant-negative activity of these agents extends also to the action of PPAR{delta}.


   Discussion
Top
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
References
 
The PPAR family consists of three structurally related nuclear receptors, {alpha}, {delta}, and {gamma}, which are intimately involved in the sensing of, and metabolic response to, nutritional status. Whereas PPAR{gamma} is best established as a pivotal mediator of adipocyte differentiation and the cellular trapping and accumulation of lipid, PPAR{alpha} is principally involved in the control of fatty acid oxidation, lipoprotein assembly, and amino acid catabolism and plays a central role in the metabolic response to fasting. The physiological roles of PPAR{delta}, which is widely expressed, are, as yet, less well defined. Although all three isoforms are capable of binding and responding to a wide array of lipid mediators, the question of whether each isoform has a specific high-affinity endogenous ligand is still unresolved.

Murine genetic knockout models have contributed substantially to our understanding of the biology of the PPARs (19, 20). Human genetics has also made important contributions: most notably, four different germline mutations of PPAR{gamma} resulting in amino acid substitutions in the LBD of the receptor have been described in association with a stereotyped clinical syndrome of severe insulin resistance, dyslipidemia, hypertension, hepatic steatosis, and partial lipodystrophy. Two of these (Pro467Leu and Val290Met) have been shown to exert potent dominant-negative activity over their wild-type counterpart (3, 4). In contrast, Phe388Leu reportedly failed to exhibit dominant-negative activity (21). However, subsequent studies in our own laboratory with both the Phe388Leu and previously uncharacterized Arg425Cys mutants have revealed comparable ability to interfere with wild-type signaling (Gurnell, M., and V. K. K. Chatterjee, unpublished data). The importance of dominant negativity, as opposed to haploinsufficiency, is supported by the absence of a marked metabolic phenotype in human subjects carrying a PPAR{gamma} frameshift/premature stop mutation, which produces a transcriptionally inactive truncated receptor that is unable to act as a dominant negative (22). It is further attested to by the discovery that a proportion of thyroid follicular carcinomas express a fusion protein consisting of the DBD of the transcription factor paired box transcription factor 8 and the LBD of PPAR{gamma}. This chimeric species not only fails to transactivate on PPAR{gamma}-responsive promoters but also suppresses the transactivation function of wild-type PPAR{gamma} on such promoters, an activity that has been implicated in the pathogenesis of these neoplasia (23).

In contrast, no pathogenic mutations in PPAR{alpha} or PPAR{delta} have been described to date in human subjects. A human PPAR{alpha} splice variant (PPAR{alpha}tr) lacking exon 6 (resulting in deletion of part of the hinge region and the entire LBD) has been reported, comprising 20–50% of native PPAR{alpha} in some human cells. Although this splice variant was unable to bind DNA, it was able to exert dominant-negative activity after forced nuclear localization (24).

To explore PPAR-mediated dominant-negative activity further, we exploited a strategy previously successfully employed for PPAR{gamma} (5) to create a powerful artificial dominant-negative PPAR{alpha} (PPAR{alpha}mut) by mutagenesis to alanine of two residues in the activation function 2 domain that critically regulate coactivator recruitment. Analysis of the structure of liganded PPAR{alpha} bound to coactivator peptide (PDB 1K7L) (25) (Fig. 10Go) provides support for this strategy as applied to PPAR{alpha}. Thus, glutamate 462 makes two hydrogen bonds to backbone amides in the coactivator helix and complements the N-terminal-positive charge of the helix dipole. This charge clamp in the wild-type molecule anchors the amphipathic, helical LXXLL motifs of many coactivators, thereby orienting the helices and apposing hydrophobic interaction surfaces on coregulatory molecules and nuclear receptor (26). Second, leucine 459 forms part of closely packed nonpolar interaction with helices 3 and 12 and the helical LXXLL coactivator motif. Interrupting both the charge clamp and hydrophobic coactivator-binding pocket would be predicted to have a marked destabilizing influence on the PPAR{alpha}-coactivator interaction.



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  		FIG. 10. Location of L459 and E462 in the three-dimensional crystal structure of PPAR{alpha} complexed to a chemical agonist and coactivator peptide (PDB 1K7L).

 
Both the previously described double-mutant PPAR{gamma} (PPAR{gamma}mut) and PPAR{alpha}mut act as constitutive repressors in the basal state, exhibit strong dominant-negative inhibition of transcriptional activation by their wild-type counterpart in response to a specific ligand, and recruit NCoR and SMRT avidly. However, the corepressor association was significantly more attenuated by ligand in the case of PPAR{alpha}mut than PPAR{gamma}mut. In the same system, wild-type PPAR{gamma} interacted with both SMRT and NCoR (5), whereas no association was seen in this study for wild-type PPAR{alpha}. This suggests that, whereas the double mutation in each case enhances corepressor interaction, the baseline levels of corepressor recruitment of the two receptors differ. Whether this is due to intrinsic differences in corepressor binding of the unliganded receptors or rather due to different degrees of receptor occupancy by endogenous ligand remains undetermined (5). The failure of PGC1{alpha} to augment transcriptional activation by cotransfected PPAR{alpha}mut is consistent with structural predictions (Fig. 10Go) and provides evidence that, as for PPAR{gamma}mut, the dominant-negative activity of PPAR{alpha}mut is due to impaired coactivator recruitment in the liganded state as well as enhanced corepressor association.

NCoR and SMRT possess a bipartite nuclear receptor interaction domain, which permits binding to specific residues in the hydrophobic pocket of nuclear receptors. Ligand binding, by establishing the charge clamp, introduces steric constraints on the length of helix that can be accommodated in the hydrophobic pocket, resulting in dissociation of corepressors with their longer helical interaction domain and binding of the smaller LXXLL-containing domain of coactivators (27, 28, 29). Not only has the crystal structure of a PPAR{alpha}-agonist-coactivator complex been described but, uniquely to date among nuclear hormone receptors, the PPAR{alpha} structure in complex with a chemical antagonist and a corepressor peptide from SMRT (30). However, how these well-delineated interactions relate to transcriptional regulation by PPARs in a cellular context is less clear. Although unliganded nuclear receptors such as thyroid hormone receptor and RAR are known to recruit corepressors in the absence of exogenous ligand, whether PPARs do so in vivo is contentious. Ligand-dissociable interaction between PPAR{alpha} and NCoR has been shown in a yeast two-hybrid assay, and cotransfection studies in human embryonic kidney 293 cells have shown NCoR to suppress the constitutive reporter activity seen in the presence of PPAR{alpha} and RXR, this repression being alleviated by specific ligand dose dependently (31). However, consistent with our results, PPAR{alpha}-Gal4 fusion proteins have been shown to attenuate transcriptional activation by Gal4 in yeast but not mammalian cells (32), and it has not proved possible to detect either DNA-bound PPAR{alpha}-RXR-NCoR or PPAR{alpha}-RXR-SMRT complexes (32). Our failure to detect an interaction between NCoR or SMRT and the wild-type PPAR{alpha} LBD in a mammalian two-hybrid system adds to these conflicting data.

It is possible that these discrepant results are explained by variable levels of endogenous PPAR{alpha} ligand in different cell types. It may be that in some cells the generation of low levels of intracellular ligand means that native PPAR{alpha} is never truly in the unliganded state, so that helix 12 is always in an active conformation, precluding corepressor interaction. Leu459Ala and Glu462Ala double mutation may mimic the binding of a chemical antagonist, destabilizing helix 12, and strongly promoting corepressor interaction, even in the presence of endogenous ligand. However, as shown in Fig. 3Go, potent exogenous ligand retains the ability to promote dissociation of PPAR{alpha}mut from corepressors in the two-hybrid system.

The dominant-negative activity of PPAR{alpha}mut was shown on an artificial PPRE and native robustly PPAR{alpha}-responsive promoters in both HepG2 cells and rat primary hepatocytes, establishing that PPAR{alpha}mut is a potent dominant-negative inhibitor of PPAR{alpha}wt on endogenous promoters, even in primary culture in which PPAR{alpha} expression levels are high. Similarly, concerns that cross-inhibition of PPAR{gamma} and PPAR{delta} by PPAR{alpha}mut was due only to the use of a minimum artificial PPRE and that, in a more natural promoter context, selectivity would be exhibited were addressed by examining the effect of PPAR{alpha}mut expression on lipid accumulation and the induction of aP2 expression during differentiation of 3T3-L1 preadipocytes in the presence of a potent PPAR{gamma} ligand (Fig. 9Go). Despite reports that the aP2 enhancer PPRE, which mediates activation by PPAR{gamma}, is the most PPAR{gamma}-selective of a raft of PPREs examined in vitro (33), expression of PPAR{alpha}mut was sufficient to block both aP2 transcriptional up-regulation and lipid accumulation. Together with our demonstration that PPAR{alpha}mut also severely attenuates the transcriptional response to a PPAR{delta} ligand in HepG2 cells, this suggests that the lack of selectivity of the mutant receptor’s inhibitory activity may be generalizable to specific responses mediated by all three PPARs. Moreover reexamination of the properties of PPAR{gamma}mut showed that it, too, is not PPAR selective with regard to suppression of PPAR-mediated transcriptional responses from endogenous promoters, albeit to a lesser extent than PPAR{alpha}mut. Although the lack of specificity using adenoviral delivery of the mutant PPARs could be attributed to high levels of expression from the constitutive CMV promoter in the viral vectors, a similar lack of specificity was seen in cotransfection experiments with stoichiometric levels of expression of wild-type and mutant receptors.

The lack of selectivity of the artificial PPAR mutants described here may also have pathophysiological relevance for human subjects harboring dominant-negative PPAR{gamma} mutations, which are believed to exhibit mechanistically similar, albeit less potent, dominant-negative effects (3, 4). Indeed, before loss of PPAR{gamma} signaling alone can be deemed to be the cause of the severe metabolic syndrome seen in subjects harboring dominant-negative PPAR{gamma} mutations, it must be established whether dominant-negative inhibition by these naturally occurring mutants can spill over onto other PPARs. Evidence for such inhibitory cross-talk is also provided by a recent study of wild-type PPAR{delta}, which, in the unliganded state, was shown to inhibit PPAR{alpha} and PPAR{gamma} action, probably due to occupancy of the relevant PPAR response elements allied to its greater affinity for SMRT and perhaps other corepressors (32). Thus, it is conceivable that in some or all of the tissues in which the receptor isoforms are coexpressed, cross-inhibition of PPAR{alpha} and/or PPAR{delta} signaling by a mutant PPAR{gamma} with an aberrant affinity for corepressor may occur.

In summary, we have generated and characterized a double-mutant PPAR{alpha} with potent dominant-negative activity toward its wild-type counterpart due to enhanced corepressor recruitment and impaired interaction with coactivators. The mutant receptor exhibits dominant-negative activity both in cotransfection reporter assays and when tested against endogenous PPAR responses in cell culture, and this inhibition is manifest against all three PPAR isoforms. This is also true of the previously reported analogous dominant-negative PPAR{gamma} mutant, which may have implications for the pathogenesis of the metabolic syndrome seen in human subjects harboring dominant-negative PPAR{gamma} mutations.


   Footnotes
 
R.K.S. was supported by a Wellcome Trust Clinical Research Training Fellowship and the Raymond and Beverly Sackler Foundation. A.M. was supported by a Marie Curie fellowship.

First Published Online January 20, 2005

1 R.K.S. and A.M. contributed equally to this work. Back

Abbreviations: aP2, Adipocyte fatty acid binding protein 4; CMV, cytomegalovirus; CPT1, carnitine palmitoyl transferase 1; DBD, DNA binding domain; DM, differentiation medium; FBS, fetal bovine serum; GAPDH, glyceraldehyde-3-phosphate dehydrogenase; GFP, green fluorescent protein; LBD, ligand-binding domain; MOI, multiplicity of infection; mut, mutation; NCoR, nuclear receptor corepressor; PDK, pyruvate dehydrogenase kinase; pFAO, peroxisomal fatty acyl-coenzyme A oxidase; PFU, plaque-forming unit; PGC1, PPAR-{gamma} coactivator 1; PPAR, peroxisome proliferator-activated receptor; PPRE, peroxisome proliferator response element; RAR, retinoic acid receptor; RXR, retinoid X receptor; SMRT, silencing mediator of retinoid and thyroid receptor; wt, wild type.

Received October 25, 2004.

Accepted for publication January 12, 2005.


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 Introduction
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 Discussion
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