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Center for Ecology and Evolutionary Biology, University of Oregon, Eugene, Oregon 97403
Address all correspondence and requests for reprints to: Joseph W. Thornton, Center for Ecology and Evolutionary Biology, University of Oregon, Eugene, Oregon 97403. E-mail: joet{at}uoregon.edu.
| Abstract |
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| Introduction |
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Steroid hormones are also found in invertebrates, including mollusks, in which there is evidence that they play an endocrine role (5, 6, 7, 8, 9, 10). In the cephalopod Octopus vulgaris, for example, 17ß-estradiol (E2) and progesterone are found in oviduct and ovarian tissues, and the concentration of these hormones in females correlates with phases of the reproductive cycle (7, 8). In addition, specific high-affinity estradiol binding and immunoreactivity to antihuman estrogen receptor (ER) antibodies have been detected in O. vulgaris female reproductive tract (7). In the bivalve mollusk, Mytilus edulis, E2 has been detected in gonads, pedal ganglia, and hemolymph (11, 12). In explants of hemocytes and pedal ganglia of this species, very low doses of estradiol produce strong and rapid cell-signaling effects (12, 13). There is evidence that synthetic pollutants that act as estrogens in vertebrates cause endocrine disruption in gastropods (14). Numerous other steroids have also been found in a variety of mollusks and may have functional roles (15, 16).
The molecular mechanisms of steroid action in mollusks remain unknown, however. Steroid receptors were long thought to be vertebrate-specific novelties, based on their complete absence from the fully sequenced genomes of insects and nematodes, but a recent study identified an ER ortholog in the mollusk Aplysia californica (17). Functional studies showed that the Aplysia ER does not bind E2 and is a powerful constitutive transcriptional activator, even in the absence of E2 or any other added hormones (17). To understand the evolution of this feature, the ancestor of all SRs was reconstructed, synthesized, and functionally characterized. This receptor was found to specifically bind E2 and activate transcription only when estrogens were added, a result consistent with the ancestors high sequence similarity to vertebrate ERs, particularly at critical sites in the ligand-binding pocket (17, 18). The constitutive activity of the Aplysia ER was therefore inferred to be a derived state. Several other nuclear receptors are also constitutively active, including the liver receptor-homolog (LRH)-1 of rodents and the ER-related receptors (ERRs), the receptors most closely related to the steroid receptors (19). Both of these receptor groups have evolved structural modifications that stabilize them in the active conformation, even in the absence of a ligand (20, 21, 22, 23).
The loss of ligand regulation in the Aplysia ER left two important questions unanswered. First, is constitutive activity specific to the Aplysia lineage or is it a general feature of protostome ERs? Second, what is the functional significance of the Aplysia ERs constitutive activity? Virtually nothing is known about sea hare endocrinology, and there is no evidence that estrogen or other steroids are present or play biological roles in Aplysia. To illuminate the role of ERs in estrogen-sensitive mollusks and its importance to receptor evolution, we studied the molecular characteristics of the ER of O. vulgaris, a cephalopod distantly related to Aplysia, in which there is evidence that estrogens are likely to be of endocrine importance. We sought to determine whether an estrogen receptor is present in this species and, if so, whether it is a ligand-dependent or constitutive transcriptional activator.
| Materials and Methods |
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Characterization of ER expression
Total RNA was extracted from brain, liver, kidney, gill, muscle, branchial heart, testis, ovary, oviduct, and oviducal gland of O. vulgaris and reverse transcribed as described above. Primers to amplify a 606-bp fragment of O. vulgaris actin were designed from existing cDNA sequence (GenBank accession AB053937.1). Primers were also designed to amplify a 636-bp fragment of the ER; both sets of primers have annealing temperatures of approximately 65 C. Separate PCRs using Phusion polymerase (New England Biolabs, Beverly, MA) with actin and ER primers were carried out for each tissue; the same amount of cDNA template was used in both amplifications, all of which were cycled as follows: initial denaturing at 98 C for 30 sec, followed by 30 cycles of 98 C denaturing for 10 sec, 68 C annealing for 20 sec, and 72 C extension for 20 sec, with a final extension of 5 min at 72 C. The quantity of cDNA from each tissue was adjusted to yield approximately equal actin amplification across tissues.
Phylogenetic and sequence analysis
The predicted protein sequence of the O. vulgaris ER open reading frame was inferred and aligned to a large database of steroid receptor and related nuclear receptor protein sequences (supplemental Table S1, published on The Endocrine Societys Journals Online web site at http://endo.endojournals.org). Alignments were prepared using ClustalX (version 1.81; see Ref. 46), assuming the Gonnet protein matrix and a geometric series of gap-change costs (1, 2, 4, 8, 16). Alignments that failed to correctly align the highly conserved DNA-binding domain and the AF-2 core of helix 12 in the LBD were deemed trivial and discarded. The remaining alignments (costs 4, 8, and 16) were concatenated into a single master data matrix for phylogenetic analysis. The effect of this elision strategy (25) is to upweight positions that align consistently across alignment costs, whereas downweighting positions that are alignment ambiguous without discarding their information altogether. The nonconserved N-terminal domain, which is too divergent to align, was excluded from the analysis.
Phylogenies were inferred using both nonparametric and parametric methods. Parsimony analysis was conducted in PAUP*4.0b10 using a heuristic search strategy of 100 iterations of random stepwise addition followed by tree bisection and reconnection branch swapping. A step matrix derived from the empirical Gonnet protein matrix (26) was used to weight amino acid changes by the inverse of their probability. Support was inferred using nonparametric bootstrapping (100 bootstrap data sets, Gonnet-weighted, 10 replicates of random addition with TBR per data set).
Bayesian Markov Chain Monte Carlo phylogenetic analysis was conducted using MrBayes software (version 3.0b4). We assumed a gamma distribution of among-site rate variation [prior for alpha parameter uniform on (0.05,10)], uniform priors for trees, and uniform on (0, 5) priors for branch lengths. The model of protein evolution was treated as a variable and integrated out using the MCMC chain. Trees and parameter values were sampled from the posterior probability distribution by metropolis-coupled MCMC in three independent runs beginning from random trees, each of which included four chains, one of them heated. The first 50,000 generations, a point well past stationarity, were discarded as burn-in. The protein sequence of the Octopus ER was also compared with the reconstructed sequence of the ancestral steroid receptor (GenBank AAQ98789) (17).
Cell culture and reporter activation
The DBD of the O. vulgaris ER and the human ER
(a gift of B. Katzenellenbogen, University of Illinois) was directionally cloned by restriction digestion/ligation into the expressible fusion vector pCMV-AD (Stratagene). LBDs (including the hinge) were cloned into pSG5-Gal4-DBD (a gift of D. Furlow, University of California, Davis, CA). The full-length transcript of the O. vulgaris ER was cloned into the pCDNA3 vector, with a Kozak sequence added to increase expression efficiency (27). A full-length transcript of human ER
in pCDNA3 was a gift of B. Darimont (University of Oregon).
CHO-K1 cells were maintained in 100-mm plates in phenol-red-free
MEM (Invitrogen) with 10% dextran-charcoal stripped fetal bovine serum (Hyclone, Logan, UT) and passaged with trypsin (Invitrogen) at 8595% confluence. Reporter assays were conducted by passage into 96-well plates. For DBD reporter assays, 4 ng of receptor plasmid per well was transfected with 2 ng of the 4-EREc38-luc reporter plasmid (a gift of C. Klinge, University of Louisville) (3), using Lipofectamine and Plus as the transfection reagents (Invitrogen). After 4 h, the transfection mixture was replaced with medium supplemented with stripped serum. For LBD reporter assays, 0.15 ng of receptor plasmid was transfected as above with 100 ng of the pFR-luc reporter plasmid (Promega, Madison, WI). On the following day, transfected cells were treated with varying concentrations of hormones (ranging from 1 pM to 1 µM) diluted in medium with stripped serum and incubated for 24 h. For full-length receptor assays, 4 ng of receptor plasmid was transfected with 2 ng of the 4-EREc38-luc reporter plasmid. In all assays, 0.1 ng of the Renilla luciferase plasmid phRltK (Promega) was cotransfected as a normalization plasmid. After incubation, cultures were lysed and assayed for reporter activation using the Dual-Glo luciferase assay kit (Promega). Firefly luciferase activity was normalized for transfection efficiency against Renilla luciferase activity. All assays were conducted in triplicate and repeated multiple times. Dose-response relationships were estimated by nonlinear regression using Prism4 software (GraphPad, San Diego, CA).
EMSA
CHO-K1 cells were transfected with 4 µg of pcDNA3 (negative control) or Octopus ER in pcDNA3 using Lipofectamine and Plus reagents as described above. Cells were harvested by trypsinization, pelleted, and resuspended in 200 µl ice-cold TEGDK buffer [10 mM Tris-HCl, 1 mm EDTA, 0.4 M KCl, 10% (vol/vol) glycerol, 1 mm dithiothreitol] with 1% protease inhibitor cocktail (Sigma-Aldrich, St. Louis, MO). Cells were lysed by four freeze-thaw cycles and spun down at 10,000 x g for 20 min at 4 C. Total protein in extract was quantified using the protein assay (Bio-Rad Laboratories, Hercules, CA).
For EMSA, 10 µg of total protein were preincubated with EMSA binding buffer (Panomics, Redwood City, CA) and 1 µg poly-d(I-C) for 5 min at room temperature. Ten nanograms of biotinylated estrogen response element (ERE) probe (Panomics, 5'-GTCCAAAGTCAGGTCACAGTGACCTGATCAAAGTT-3'), with or without an excess of unlabeled competitor DNA, were added and incubated at 18 C for 30 min. Specific binding of the ER to the labeled ERE was assessed by introducing unlabeled ERE in a 132-fold molar excess. We also assessed the ability of unlabeled glucocorticoid response elements (GREs; 5'-GTCCAAGTCAGAACACAGTGTTCTGATCAAAGTT-3') and estrogen-related response elements (ERREs; 5'-AGTGGCGATTTGTCAAGGTCACACAGTTAG-3') to compete for ER binding to the labeled ERE, again with competitor in 132-fold molar excess. GREs and ERREs were synthesized as single-stranded oligonucleotides and annealed by boiling for 5 min in buffer (10 mM Tris, 1 mm EDTA, 50 mM NaCl) followed by gradual cooling. After incubation, reaction products were separated on a 5% native polyacrylamide gel in 1x Tris-borate EDTA buffer. The gel was run in an ice-water bath for 40 min at 120 V and transferred to a Biodyne B nylon membrane (Pall, Ann Arbor, MI) for 29 min at 300 mA. Chemiluminescent detection of biotinylated DNA was performed using the Panomics EMSA kit according to the manufacturers directions.
Ligand binding assays
CHO-K1 cells were grown to approximately 90% confluence on two 100-mm plates and transfected with 4 µg of human ER
or Octopus ER in pcDNA3 using 30 µl Lipofectamine and 20 µl Plus reagent per plate and incubated for 4 h. Cells were harvested by trypsinization, spun down, resuspended in 7 ml ice-cold TEGDK buffer [10 mM Tris-HCl (pH 7.4), 1 mm EDTA, 0.4 M KCl, 10% (vol/vol) glycerol, 1 mm dithiothreitol], and homogenized on ice in a ground-glass tissue grinder. Homogenate was spun down at 100,000 x g for 1 h at 4 C. Supernatant was divided into 200-µl aliquots and incubated overnight at 4 C in triplicate with varied concentrations of 2,4,6,7-3H-estradiol (NEN Life Science Products/PerkinElmer, Boston, MA) for total binding or with labeled estradiol plus a 200-fold molar excess of unlabeled estradiol for nonspecific binding. Samples were incubated for 15 min at 4 C with 200 µl of a 50% slurry of hydroxyapatite (HAP; Bio-Rad) in TEGDK buffer with vortexing every 5 min, after which the HAP was subjected to three repetitions of spinning down (12,000 x g for 30 sec), resuspension, and washing in 1 ml of cold TEGDK. Bound ligand was extracted overnight from the washed HAP in 1 ml ethanol. The following day, 500 µl of the suspension was added to 5 ml scintillation fluid and counted on a liquid scintillation counter. Specific binding was calculated as total minus nonspecific bindings; binding constants were estimated using Prism software (GraphPad). All experiments were conducted in triplicate and repeated multiple times.
| Results |
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and ERß (86%) and much lower similarity to other steroid receptors (such as the androgen, progestin, and corticoid receptors) and the ERRs (Table 1
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B activation domain in CHO-K1 cells along with a luciferase reporter driven by four canonical EREs. Luciferase expression mediated by the Octopus ER DBD was significantly elevated over background and was equivalent to that driven by the human ER
DBD (Fig. 4A
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, which also binds to and activates from both ERE and ERRE (29). Because the Aplysia ER DBD also mediates transcription from canonical EREs, we conclude the classic DNA recognition function of vertebrate ERs are conserved in mollusks.
Based on the presence and apparent functional role of estradiol in Octopus (7, 8), we hypothesized that the transcriptional activity of the Octopus ER would be estrogen dependent. We prepared a fusion construct of the Gal4-DBD with the Octopus ER LBD (including the hinge and C-terminal extension) and expressed it in CHO-K1 cells with a upstream activating sequence (UAS)-driven reporter, using charcoal-stripped serum to eliminate the potential for spurious ligand activation. As expected, there was no activation by the human ER
above background in the absence of hormone, and estradiol treatment at 1 µM produced a 25-fold increase in reporter activation. In contrast, the Octopus ER LBD was constitutively active, activating transcription 20-fold above background when no ligand was added; estradiol had no further effect on reporter expression (Fig. 5A
). We also treated cells with varied concentrations of estradiol from 1012 to 106 M: the human ER
displayed the expected dose-dependent increase in reporter expression, but the Octopus ER was again constitutively active and unresponsive to estrogen at all doses. (Fig. 5B
). The Octopus ER LBD was insensitive to other steroid hormones as well: we tested a broad panel of other estrogens, progesterone, androgens, corticosteroids, and estrogenic xenobiotics, but none had a significant effect on the Octopus ERs constitutive transcriptional activation (Fig. 5A
).
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To determine whether the Octopus ERs insensitivity to estradiol is an artifact of using a heterologous mammalian expression system, we conducted competitive radioligand-binding studies in a cell-free system. The human ER
bound tritiated estradiol tightly and specifically, but the Octopus ER showed no evidence for any specific estradiol binding, even at concentrations that saturate the human ER
(Fig. 6
). The lack of estradiol binding is unlikely to be due to a lack of ER protein because receptor proteins for this experiment were expressed using the same system as in the reporter assays; the Octopus ERs very strong effect on transcription in that assay indicates robust expression. The receptors unresponsiveness to estradiol in trans-activation assays therefore appears to be due to an intrinsic inability to bind the ligand.
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(30, 31) with those in the Octopus and Aplysia ERs. Very low conservation was apparent, with 17 of the 26 residues differing between Octopus and human (Fig. 8
numbering). The replacement of the histidine at position 524 of the human ER
with the much bulkier and less polar tyrosine in the mollusks is of particular interest: H524 plays a crucial role in ligand recognition by the human ER
, forming a hydrogen bond with the 17-hydroxyl moiety of estradiol, and mutations at this position are known to severely compromise estradiol binding (32). We also compared the ligand pocket residues in the Octopus and human ERs with those in the inferred sequence of the ancestral steroid receptor, the ancient gene from which all present-day steroid receptors evolved by duplication. This receptor has been shown experimentally to bind and activate transcription in the presence of estradiol (17). In the human ER
, 22 of the 26 ligand-pocket residues are identical with the ancestor, and none of the replacements are radical. In contrast, the Octopus ER is highly derived, with only 12 of 26 amino acids identical with the ancestor, and six of the replacements are radical. There are three positions in the crystal structure that form hydrogen bonds with estradiol and discriminate among ligands (31); all of these are conserved between the ancestral and human receptors, but two (including H524Y) have derived states in the Octopus ER.
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| Discussion |
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We found that the Octopus ER is widely expressed in both sexes, with the highest transcript levels in ovary. These results are consistent with a role in female reproduction but do not rule out other functions as well. Our experiments were limited to a single time point. Further studies are necessary to determine whether ER expression is temporally up-regulated in some tissues during specific stages of the Octopus reproductive cycle.
Our findings indicate that the constitutive activity previously observed with the sea hare ER is not Aplysia or even gastropod-specific; rather, constitutive ER activity is common to the mollusks. Together with previous knowledge about the estrogen responsiveness of the ancestral steroid receptor, this result supports the hypothesis that the ER evolved constitutive activity deep in the mollusk or protostome lineage. Specifically, the ancestral steroid receptor has been shown experimentally to bind estradiol and activate transcription in a dose-dependent fashion in the presence of estrogens (17). Furthermore, analysis of the ancestral ligand-binding pocket showed that the residues that mediate contact with estradiol are strongly conserved between the ancestral receptor and present-day estrogen-activated receptors (18). In contrast, the sequences of the mollusk ERs are much less similar to those of the ancestral receptor (as shown by the much longer branch lengths leading to this group in Fig. 2
) and in the ligand-pocket in particular. An alternate scenario is that ligand independence is ancestral, with ligand-activation gained independently in the vertebrate ERs and in the lineage leading to the other vertebrate steroid receptors; however, the experimental and bioinformatic evidence to date support a loss of ancestral ligand dependence in the lineage leading to the mollusk or protostome ERs. Characterizing ERs from other lophotrochozoan phyla will allow further tests of this hypothesis and help determine more precisely when the evolutionary shift in receptor function occurred.
It has been argued that the ancestral nuclear receptor was probably a constitutively active orphan receptor and that liganded receptors emerged repeatedly from this ancestor, in parallel, during the course of receptor evolution (35). The evolution of ligand-independent constitutive activity in the mollusk ERs from an ancestral liganded receptor provides a counterexample to this model. Furthermore, this is not the first example of an evolutionary shift from a liganded to constitutive receptor. Structural and experimental studies indicate that the LRH-1 proteins of rodents are constitutive activators that have an empty ligand-binding pocket but are stable in the active conformation, in contrast to the human LRH-1 and the SF-1 proteins of humans and rodents, which require ligand binding for full transcriptional activity (22). The loss of ligand dependence in the rodent LRH-1 is due primarily to a single derived amino acid replacement, which creates a novel salt bridge within the receptor that excludes the ligand and stabilizes the receptor in the transcriptionally active conformation (22).
In addition, there are many examples of steroid receptor mutations that confer ligand-independent constitutive activity (36, 37, 38, 39, 40). At least one of these, at position 537 of the human ER
, occurs during the evolution of mammary tumor cells in humans (41). Intriguingly, the Octopus ER is not conserved with the human ER
or the ancestral steroid receptor at two of these positions, L536F and Y537C (based on human numbering). These replacements may contribute to the mechanism by which constitutive activity was likely to have been gained in the mollusk ERs. In addition, the loss of H524 from the ancestor may be important for the loss of estradiol binding in the mollusk ERs. The frequency and structural simplicity by which liganded receptors have evolved constitutive activation provides some evidence against the ancestral orphan receptor theory and favors the view that constitutive activation has evolved several times in parallel from a ligand-dependent nuclear receptor ancestor.
The apparent decoupling of the Octopus ER from estrogen signaling raises questions about the physiological and/or developmental functions of this receptor, which will require further investigation. Other constitutively active nuclear receptors play important roles in diverse organismal processes and are regulated by factors other than ligands, just as classic transcription factors are. For example, unliganded nuclear receptors may be regulated at the transcriptional level, by posttranscriptional modifications such as phosphorylation and sumoylation or the presence/absence of other receptor-interacting proteins, such as transcriptional coactivators (28, 42, 43, 44, 45). We propose that similar mechanisms are likely to regulate the spatial and temporal role of the ERs in the biological processes of mollusks, which remain to be defined.
It is surprising that the Octopus ER does not respond to estradiol, given the circumstantial evidence for estrogen signaling in that species. In addition to studies that have identified estradiol and progesterone in Octopus tissue and demonstrated a correlation of hormone titers with reproductive status, there is also evidence for specific E2 binding in Octopus reproductive tissues (7, 8, 10). These studies provide only indirect evidence that E2 is a functional hormone; its presence does not exclude the possibility that it might be produced as an intermediate or metabolite of some other active hormone, and the binding observed in tissue extracts could be due to some other protein, e.g. an enzyme, not involved in endocrine signaling. Our experiments show that the Octopus ER does not bind or respond to estradiol, so if E2 does play an authentic signaling role in Octopus or other mollusks, the ER is not likely to be the mediator of these effects. There are numerous alternative pathways of steroid action, which trigger rapid, nongenomic signaling cascades that do not require transcriptional activation through the classic receptor (47). For example, some rapid effects of progesterone on vertebrate oocytes appear to be mediated by a seven-helix transmembrane protein (48, 49). In human cells, a G protein-coupled transmembrane receptor has been discovered that specifically binds estradiol and triggers ligand-dependent activation of adenylyl cyclase and phosphatidylinositol 3-kinase (50, 51). In the mollusk M. edulis, treatment with estradiol causes a very fast, concentration-dependent increase in nitric oxide production (12). Because the ER does not appear to mediate estrogen signaling in mollusks, these kinds of nongenomic mechanisms via alternative receptors are likely candidates for this role. If the relevant membrane receptors in mollusks are related to those in vertebrates, their conservation would indicate that nongenomic estrogen signaling is an extremely ancient mechanism for mediating steroid hormone effects in animals, one at least as old as the protostome-deuterostome divergence more than 600 million years ago.
An ancient nongenomic mechanism for estrogen signaling would suggest a plausible scenario for the evolution of the interaction between estrogens and the ancestral steroid receptor. Nuclear receptor phylogenies indicate that the steroid receptor clade was generated by duplication of a more ancient receptor related to the extant ERR and/or SF-1 family (19); the ancestral steroid receptor then diverged and increased its affinity for estrogens (17, 18). For natural selection to have played a role in this process, estrogens must have been present before the receptor evolved affinity for them, which is likely only if estrogens already had other functions in the cell. If non-ER-mediated pathways of estrogen signaling are ancient, however, then selection to maintain these functions would have stabilized the production of the hormone before the ancestral ER evolved. Such a scenario is similar to the process by which the androgen and progestin receptors, which descended from the estrogen-responsive ancestral steroid receptor by gene duplication, recruited intermediates in the synthesis of estrogens for new functional roles as signaling ligands. This process is called ligand exploitation because it involves duplicated receptors coopting steroids that had other, older functions as novel binding partners (17, 18). We hypothesize that the ancestral SRs relationship with estrogen may also have evolved by exploitation of a more ancient ligand, estrogen, whose original function was signaling through nongenomic pathways. Reports that estradiol is produced by cnidarians, basal metazoa in which there is no evidence for any steroid receptor genes, are consistent with this view (52, 53). Testing this proposal will require additional information on the pathways that mediate the role of estrogens in protostomes and basal metazoa.
| Acknowledgments |
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| Footnotes |
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Disclosure statement: The authors have nothing to disclose.
First Published Online May 11, 2006
Abbreviations: AF, Activation function; DBD, DNA-binding domain; E2, 17ß-estradiol; ER, estrogen receptor; ERE, estrogen response element; ERR, ER-related receptor; ERRE, estrogen-related response element; GRE, glucocorticoid response element; HAP, hydroxyapatite; LBD, ligand-binding domain; LRH, liver receptor-homolog; RACE, rapid amplification of cDNA ends; SF, steroidogenic factor; SR, steroid hormone receptor; TEGDK, buffer of Tris-HCl, EDTA, glycerol, dithiothreitol, and KCl; UAS, upstream activating sequence.
Received March 21, 2006.
Accepted for publication April 28, 2006.
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